RNA–Protein interactions for RNA: ENST00000539599.5

UBE3B-210, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best)

Gene UBE3B, Length 2,763 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-210ENST00000539599 FAM227BQ96M60 508 aa17.02■□□□□ 0.31
UBE3B-210ENST00000539599 TAF6LQ9Y6J9 622 aa17.01■□□□□ 0.31
UBE3B-210ENST00000539599 MED1Q15648 1581 aaPredicted RBP17.01■□□□□ 0.31
UBE3B-210ENST00000539599 KDM3BQ7LBC6 1761 aa17.01■□□□□ 0.31
UBE3B-210ENST00000539599 ANAPC15P60006 121 aa17.01■□□□□ 0.31
UBE3B-210ENST00000539599 CCDC173Q0VFZ6 552 aa17.01■□□□□ 0.31
UBE3B-210ENST00000539599 KCNH5Q8NCM2 988 aa17.01■□□□□ 0.31
UBE3B-210ENST00000539599 CNPY2Q9Y2B0 182 aa17.01■□□□□ 0.31
UBE3B-210ENST00000539599 CCDC9Q9Y3X0 531 aaKnown RBP17.01■□□□□ 0.31
UBE3B-210ENST00000539599 RPAP1Q9BWH6 1393 aaPredicted RBP17.01■□□□□ 0.31
UBE3B-210ENST00000539599 USP48Q86UV5 1035 aa17■□□□□ 0.31
UBE3B-210ENST00000539599 DIAPH3Q9NSV4 1193 aa17■□□□□ 0.31
UBE3B-210ENST00000539599 CHD2O14647 1828 aaKnown RBP17■□□□□ 0.31
UBE3B-210ENST00000539599 SASH1O94885 1247 aa17■□□□□ 0.31
UBE3B-210ENST00000539599 KSR2Q6VAB6 950 aa17■□□□□ 0.31
UBE3B-210ENST00000539599 CCDC83Q8IWF9 413 aa17■□□□□ 0.31
UBE3B-210ENST00000539599 CLASRPQ8N2M8 674 aaKnown RBP17■□□□□ 0.31
UBE3B-210ENST00000539599 EAF2Q96CJ1 260 aaPredicted RBP17■□□□□ 0.31
UBE3B-210ENST00000539599 PPP1R9BQ96SB3 815 aa17■□□□□ 0.31
UBE3B-210ENST00000539599 EPHA10Q5JZY3 1008 aa16.99■□□□□ 0.31
UBE3B-210ENST00000539599 NECAB1Q8N987 351 aa16.99■□□□□ 0.31
UBE3B-210ENST00000539599 TTC14Q96N46 770 aa16.99■□□□□ 0.31
UBE3B-210ENST00000539599 N4BP2Q86UW6 1770 aaPredicted RBP16.99■□□□□ 0.31
UBE3B-210ENST00000539599 IFIT2P09913 472 aaKnown RBP16.99■□□□□ 0.31
UBE3B-210ENST00000539599 JAKMIP1Q96N16 626 aaKnown RBP16.99■□□□□ 0.31
UBE3B-210ENST00000539599 BOLA2Q9H3K6 86 aa16.99■□□□□ 0.31
UBE3B-210ENST00000539599 NLRP2Q9NX02 1062 aa16.99■□□□□ 0.31
UBE3B-210ENST00000539599 ADGRL3Q9HAR2 1447 aa16.98■□□□□ 0.31
UBE3B-210ENST00000539599 AOX1Q06278 1338 aa16.98■□□□□ 0.31
UBE3B-210ENST00000539599 IGKV5-2P06315 115 aa16.98■□□□□ 0.31
UBE3B-210ENST00000539599 MCM2P49736 904 aa16.98■□□□□ 0.31
UBE3B-210ENST00000539599 PDIA6Q15084 440 aa16.98■□□□□ 0.31
UBE3B-210ENST00000539599 CHRNA2Q15822 529 aa16.98■□□□□ 0.31
UBE3B-210ENST00000539599 KIAA1211Q6ZU35 1233 aa16.98■□□□□ 0.31
UBE3B-210ENST00000539599 KRT28Q7Z3Y7 464 aa16.98■□□□□ 0.31
UBE3B-210ENST00000539599 NFATC2IPQ8NCF5 419 aa16.98■□□□□ 0.31
UBE3B-210ENST00000539599 LRSAM1Q6UWE0 723 aa16.98■□□□□ 0.31
UBE3B-210ENST00000539599 ANP32BQ92688 251 aaKnown RBP16.97■□□□□ 0.31
UBE3B-210ENST00000539599 ECHDC1Q9NTX5 307 aa16.97■□□□□ 0.31
UBE3B-210ENST00000539599 RGPD5Q99666 1765 aa16.96■□□□□ 0.31
UBE3B-210ENST00000539599 GRM8O00222 908 aa16.96■□□□□ 0.31
UBE3B-210ENST00000539599 FIBPO43427 364 aa16.96■□□□□ 0.31
UBE3B-210ENST00000539599 GLRX3O76003 335 aaKnown RBP16.96■□□□□ 0.31
UBE3B-210ENST00000539599 RIC3Q7Z5B4 369 aa16.96■□□□□ 0.31
UBE3B-210ENST00000539599 INTS4Q96HW7 963 aaKnown RBP16.96■□□□□ 0.31
UBE3B-210ENST00000539599 USP54Q70EL1 1684 aa16.96■□□□□ 0.31
UBE3B-210ENST00000539599 HOXB7P09629 217 aa16.96■□□□□ 0.31
UBE3B-210ENST00000539599 SYT1P21579 422 aa16.96■□□□□ 0.31
UBE3B-210ENST00000539599 ST3GAL1Q11201 340 aa16.96■□□□□ 0.31
UBE3B-210ENST00000539599 NMIQ13287 307 aaPredicted RBP16.95■□□□□ 0.3
UBE3B-210ENST00000539599 AMOTQ4VCS5 1084 aa16.95■□□□□ 0.3
UBE3B-210ENST00000539599 XAGE3Q8WTP9 111 aa16.95■□□□□ 0.3
UBE3B-210ENST00000539599 MYD88Q99836 296 aa16.95■□□□□ 0.3
UBE3B-210ENST00000539599 A0A0D9SFI3 127 aa16.95■□□□□ 0.3
UBE3B-210ENST00000539599 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.95■□□□□ 0.3
UBE3B-210ENST00000539599 USP16Q9Y5T5 823 aa16.95■□□□□ 0.3
UBE3B-210ENST00000539599 FAM173BQ6P4H8 233 aa16.94■□□□□ 0.3
UBE3B-210ENST00000539599 COPS6Q7L5N1 327 aa16.94■□□□□ 0.3
UBE3B-210ENST00000539599 LMO7Q8WWI1 1683 aa16.94■□□□□ 0.3
UBE3B-210ENST00000539599 ATP5J2-PTCD1G3V325 749 aa16.94■□□□□ 0.3
UBE3B-210ENST00000539599 PTCD1O75127 700 aaKnown RBP16.94■□□□□ 0.3
UBE3B-210ENST00000539599 PROSER2Q86WR7 435 aaPredicted RBP16.94■□□□□ 0.3
UBE3B-210ENST00000539599 ZNF496Q96IT1 587 aaPredicted RBP16.94■□□□□ 0.3
UBE3B-210ENST00000539599 HYPKQ9NX55 129 aa16.94■□□□□ 0.3
UBE3B-210ENST00000539599 ZNF790Q6PG37 636 aa16.94■□□□□ 0.3
UBE3B-210ENST00000539599 KCNJ4P48050 445 aa16.93■□□□□ 0.3
UBE3B-210ENST00000539599 SLFNL1Q499Z3 407 aa16.93■□□□□ 0.3
UBE3B-210ENST00000539599 ZSCAN30Q86W11 494 aa16.93■□□□□ 0.3
UBE3B-210ENST00000539599 ERBB3P21860 1342 aa16.93■□□□□ 0.3
UBE3B-210ENST00000539599 GJB2P29033 226 aa16.93■□□□□ 0.3
UBE3B-210ENST00000539599 MTX1Q13505 466 aa16.93■□□□□ 0.3
UBE3B-210ENST00000539599 ZNF589Q86UQ0 364 aaPredicted RBP16.93■□□□□ 0.3
UBE3B-210ENST00000539599 LIMCH1Q9UPQ0 1083 aa16.93■□□□□ 0.3
UBE3B-210ENST00000539599 CHMP3Q9Y3E7 222 aa16.93■□□□□ 0.3
UBE3B-210ENST00000539599 RBM8AQ9Y5S9 174 aaKnown RBP16.93■□□□□ 0.3
UBE3B-210ENST00000539599 G3BP1Q13283 466 aaKnown RBP eCLIP16.92■□□□□ 0.3
UBE3B-210ENST00000539599 ME3Q16798 604 aa16.92■□□□□ 0.3
UBE3B-210ENST00000539599 FERMT3Q86UX7 667 aa16.92■□□□□ 0.3
UBE3B-210ENST00000539599 LINS1Q8NG48 757 aa16.92■□□□□ 0.3
UBE3B-210ENST00000539599 PDRG1Q9NUG6 133 aa16.92■□□□□ 0.3
UBE3B-210ENST00000539599 SMC3Q9UQE7 1217 aa16.92■□□□□ 0.3
UBE3B-210ENST00000539599 TTC41PQ6P2S7 1318 aa16.92■□□□□ 0.3
UBE3B-210ENST00000539599 WDR33Q9C0J8 1336 aaKnown RBP16.92■□□□□ 0.3
UBE3B-210ENST00000539599 STX6O43752 255 aa16.92■□□□□ 0.3
UBE3B-210ENST00000539599 HSP90AB4PQ58FF6 505 aa16.92■□□□□ 0.3
UBE3B-210ENST00000539599 DDX21Q9NR30 783 aaKnown RBP eCLIP16.92■□□□□ 0.3
UBE3B-210ENST00000539599 HEG1Q9ULI3 1381 aa16.91■□□□□ 0.3
UBE3B-210ENST00000539599 VPS37CA5D8V6 355 aaPredicted RBP16.91■□□□□ 0.3
UBE3B-210ENST00000539599 ALDH1L1O75891 902 aa16.91■□□□□ 0.3
UBE3B-210ENST00000539599 CSB-PGBD3P0DP91 1061 aa16.91■□□□□ 0.3
UBE3B-210ENST00000539599 DNM1Q05193 864 aaKnown RBP16.91■□□□□ 0.3
UBE3B-210ENST00000539599 ZSCAN22P10073 491 aaPredicted RBP16.91■□□□□ 0.3
UBE3B-210ENST00000539599 STK3Q13188 491 aa16.91■□□□□ 0.3
UBE3B-210ENST00000539599 FSD1Q9BTV5 496 aa16.91■□□□□ 0.3
UBE3B-210ENST00000539599 KDM6AO15550 1401 aaPredicted RBP16.9■□□□□ 0.3
UBE3B-210ENST00000539599 MBD3O95983 291 aa16.9■□□□□ 0.3
UBE3B-210ENST00000539599 MSNP26038 577 aaKnown RBP16.9■□□□□ 0.3
UBE3B-210ENST00000539599 CCDC129Q6ZRS4 1044 aa16.9■□□□□ 0.3
UBE3B-210ENST00000539599 RAPGEF4Q8WZA2 1011 aa16.9■□□□□ 0.3
UBE3B-210ENST00000539599 IL17RAQ96F46 866 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms