RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 LRP5O75197 1615 aa16.74■□□□□ 0.27
CCDC42-202ENST00000539522 SLC4A2P04920 1241 aa16.73■□□□□ 0.27
CCDC42-202ENST00000539522 RFC4P35249 363 aa16.73■□□□□ 0.27
CCDC42-202ENST00000539522 ATF5Q9Y2D1 282 aaPredicted RBP16.73■□□□□ 0.27
CCDC42-202ENST00000539522 ADCY9O60503 1353 aa16.73■□□□□ 0.27
CCDC42-202ENST00000539522 MAP3K15Q6ZN16 1313 aa16.72■□□□□ 0.27
CCDC42-202ENST00000539522 MSH5O43196 834 aa16.72■□□□□ 0.27
CCDC42-202ENST00000539522 TM4SF1P30408 202 aa16.72■□□□□ 0.27
CCDC42-202ENST00000539522 RARSP54136 660 aaKnown RBP16.72■□□□□ 0.27
CCDC42-202ENST00000539522 DDR1Q08345 913 aa16.72■□□□□ 0.27
CCDC42-202ENST00000539522 AIMP1Q12904 312 aaKnown RBP16.72■□□□□ 0.27
CCDC42-202ENST00000539522 SLC16A10Q8TF71 515 aa16.72■□□□□ 0.27
CCDC42-202ENST00000539522 BCL2L13Q9BXK5 485 aa16.72■□□□□ 0.27
CCDC42-202ENST00000539522 MTFR1LQ9H019 292 aa16.72■□□□□ 0.27
CCDC42-202ENST00000539522 HYPKQ9NX55 129 aa16.72■□□□□ 0.27
CCDC42-202ENST00000539522 KIAA1551Q9HCM1 1747 aa16.71■□□□□ 0.27
CCDC42-202ENST00000539522 A0A087WZG4 1122 aa16.71■□□□□ 0.27
CCDC42-202ENST00000539522 TBC1D9BQ66K14 1250 aa16.71■□□□□ 0.27
CCDC42-202ENST00000539522 ZBTB3Q9H5J0 574 aa16.71■□□□□ 0.27
CCDC42-202ENST00000539522 NFIXQ14938 502 aa16.7■□□□□ 0.26
CCDC42-202ENST00000539522 KIF13BQ9NQT8 1826 aa16.7■□□□□ 0.26
CCDC42-202ENST00000539522 UBN2Q6ZU65 1347 aa16.7■□□□□ 0.26
CCDC42-202ENST00000539522 ERVV-1B6SEH8 477 aa16.69■□□□□ 0.26
CCDC42-202ENST00000539522 CT47B1P0C2W7 299 aaPredicted RBP16.69■□□□□ 0.26
CCDC42-202ENST00000539522 FLIIQ13045 1269 aa16.69■□□□□ 0.26
CCDC42-202ENST00000539522 ANKRD31Q8N7Z5 1873 aa16.69■□□□□ 0.26
CCDC42-202ENST00000539522 ATP10DQ9P241 1426 aa16.69■□□□□ 0.26
CCDC42-202ENST00000539522 N4BP2Q86UW6 1770 aaPredicted RBP16.69■□□□□ 0.26
CCDC42-202ENST00000539522 POLRMTO00411 1230 aaKnown RBP16.68■□□□□ 0.26
CCDC42-202ENST00000539522 ZPR1O75312 459 aa16.68■□□□□ 0.26
CCDC42-202ENST00000539522 BCAR3O75815 825 aa16.68■□□□□ 0.26
CCDC42-202ENST00000539522 ALDH1L2Q3SY69 923 aa16.68■□□□□ 0.26
CCDC42-202ENST00000539522 GIGYF2Q6Y7W6 1299 aaKnown RBP16.68■□□□□ 0.26
CCDC42-202ENST00000539522 RGL2O15211 777 aa16.67■□□□□ 0.26
CCDC42-202ENST00000539522 BRPF1P55201 1214 aaPredicted RBP16.67■□□□□ 0.26
CCDC42-202ENST00000539522 ANKRD13DQ6ZTN6 518 aa16.67■□□□□ 0.26
CCDC42-202ENST00000539522 ZNF34Q8IZ26 560 aa16.67■□□□□ 0.26
CCDC42-202ENST00000539522 PLBD2Q8NHP8 589 aa16.67■□□□□ 0.26
CCDC42-202ENST00000539522 ZNF428Q96B54 188 aa16.67■□□□□ 0.26
CCDC42-202ENST00000539522 STK31Q9BXU1 1019 aa16.67■□□□□ 0.26
CCDC42-202ENST00000539522 TNRC6CQ9HCJ0 1690 aaKnown RBP16.66■□□□□ 0.26
CCDC42-202ENST00000539522 MMP10P09238 476 aa16.66■□□□□ 0.26
CCDC42-202ENST00000539522 CLEC4GQ6UXB4 293 aa16.66■□□□□ 0.26
CCDC42-202ENST00000539522 NLGN1Q8N2Q7 840 aa16.66■□□□□ 0.26
CCDC42-202ENST00000539522 ARXQ96QS3 562 aa16.66■□□□□ 0.26
CCDC42-202ENST00000539522 TNNQ9UQP3 1299 aa16.66■□□□□ 0.26
CCDC42-202ENST00000539522 CARMIL3Q8ND23 1372 aa16.65■□□□□ 0.26
CCDC42-202ENST00000539522 PI4KAP2A4QPH2 592 aa16.65■□□□□ 0.26
CCDC42-202ENST00000539522 F6X3S4 739 aa16.65■□□□□ 0.26
CCDC42-202ENST00000539522 KIF6Q6ZMV9 814 aa16.65■□□□□ 0.26
CCDC42-202ENST00000539522 PI4KAP1Q8N8J0 262 aa16.65■□□□□ 0.26
CCDC42-202ENST00000539522 ISCA1Q9BUE6 129 aa16.65■□□□□ 0.26
CCDC42-202ENST00000539522 DDX60Q8IY21 1712 aaKnown RBP16.65■□□□□ 0.26
CCDC42-202ENST00000539522 IGKV5-2P06315 115 aa16.64■□□□□ 0.25
CCDC42-202ENST00000539522 TCIRG1Q13488 830 aa16.64■□□□□ 0.25
CCDC42-202ENST00000539522 KSR2Q6VAB6 950 aa16.64■□□□□ 0.25
CCDC42-202ENST00000539522 BICDL1Q6ZP65 573 aa16.64■□□□□ 0.25
CCDC42-202ENST00000539522 SPON1Q9HCB6 807 aa16.64■□□□□ 0.25
CCDC42-202ENST00000539522 SMC4Q9NTJ3 1288 aa16.64■□□□□ 0.25
CCDC42-202ENST00000539522 MAP3K2Q9Y2U5 619 aa16.64■□□□□ 0.25
CCDC42-202ENST00000539522 COL11A2P13942 1736 aaPredicted RBP16.63■□□□□ 0.25
CCDC42-202ENST00000539522 GPTP24298 496 aa16.63■□□□□ 0.25
CCDC42-202ENST00000539522 NOB1Q9ULX3 412 aaKnown RBP16.63■□□□□ 0.25
CCDC42-202ENST00000539522 LAMB2P55268 1798 aa16.63■□□□□ 0.25
CCDC42-202ENST00000539522 C10orf71Q711Q0 1435 aa16.62■□□□□ 0.25
CCDC42-202ENST00000539522 ATP5J2-PTCD1G3V325 749 aa16.62■□□□□ 0.25
CCDC42-202ENST00000539522 SUSD4Q5VX71 490 aa16.62■□□□□ 0.25
CCDC42-202ENST00000539522 METTL22Q9BUU2 404 aaPredicted RBP16.62■□□□□ 0.25
CCDC42-202ENST00000539522 CHMP4AQ9BY43 222 aa16.62■□□□□ 0.25
CCDC42-202ENST00000539522 NIP7Q9Y221 180 aaKnown RBP eCLIP16.62■□□□□ 0.25
CCDC42-202ENST00000539522 NTSR2O95665 410 aa16.61■□□□□ 0.25
CCDC42-202ENST00000539522 FKBP5Q13451 457 aaPredicted RBP16.61■□□□□ 0.25
CCDC42-202ENST00000539522 RIC3Q7Z5B4 369 aa16.61■□□□□ 0.25
CCDC42-202ENST00000539522 NLRP10Q86W26 655 aa16.61■□□□□ 0.25
CCDC42-202ENST00000539522 SYNE4Q8N205 404 aa16.61■□□□□ 0.25
CCDC42-202ENST00000539522 CCDC24Q8N4L8 307 aa16.61■□□□□ 0.25
CCDC42-202ENST00000539522 MYD88Q99836 296 aa16.61■□□□□ 0.25
CCDC42-202ENST00000539522 ABCC12Q96J65 1359 aa16.61■□□□□ 0.25
CCDC42-202ENST00000539522 GOLGB1Q14789 3259 aaKnown RBP16.6■□□□□ 0.25
CCDC42-202ENST00000539522 SERPINB2P05120 415 aa16.6■□□□□ 0.25
CCDC42-202ENST00000539522 CWF19L2Q2TBE0 894 aaKnown RBP16.6■□□□□ 0.25
CCDC42-202ENST00000539522 BEND3Q5T5X7 828 aa16.6■□□□□ 0.25
CCDC42-202ENST00000539522 PRR5LQ6MZQ0 368 aa16.6■□□□□ 0.25
CCDC42-202ENST00000539522 NPM2Q86SE8 214 aaKnown RBP16.6■□□□□ 0.25
CCDC42-202ENST00000539522 BRCA1P38398 1863 aaKnown RBP16.6■□□□□ 0.25
CCDC42-202ENST00000539522 COL4A1P02462 1669 aa16.59■□□□□ 0.25
CCDC42-202ENST00000539522 DLEC1Q9Y238 1755 aa16.59■□□□□ 0.25
CCDC42-202ENST00000539522 TRIM28Q13263 835 aaKnown RBP16.59■□□□□ 0.25
CCDC42-202ENST00000539522 DNAAF4Q8WXU2 420 aa16.59■□□□□ 0.25
CCDC42-202ENST00000539522 SETDB2Q96T68 719 aa16.59■□□□□ 0.25
CCDC42-202ENST00000539522 ZNF652Q9Y2D9 606 aa16.59■□□□□ 0.25
CCDC42-202ENST00000539522 PTPRCP08575 1304 aa16.59■□□□□ 0.25
CCDC42-202ENST00000539522 PXDNLA1KZ92 1463 aa16.59■□□□□ 0.25
CCDC42-202ENST00000539522 RCAN3Q9UKA8 241 aa16.58■□□□□ 0.24
CCDC42-202ENST00000539522 IBTKQ9P2D0 1353 aaPredicted RBP16.58■□□□□ 0.24
CCDC42-202ENST00000539522 FAM177BA6PVY3 158 aa16.57■□□□□ 0.24
CCDC42-202ENST00000539522 NEURL1BA8MQ27 555 aa16.57■□□□□ 0.24
CCDC42-202ENST00000539522 DDX58O95786 925 aaKnown RBP16.57■□□□□ 0.24
CCDC42-202ENST00000539522 TRIM27P14373 513 aa16.57■□□□□ 0.24
CCDC42-202ENST00000539522 C3orf67Q6ZVT6 689 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms