RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 GOLGB1Q14789 3259 aaKnown RBP20.4■□□□□ 0.86
RPAIN-206ENST00000539417 ZBTB3Q9H5J0 574 aa20.4■□□□□ 0.86
RPAIN-206ENST00000539417 PARP3Q9Y6F1 533 aa20.4■□□□□ 0.86
RPAIN-206ENST00000539417 AFDNP55196 1824 aaKnown RBP20.4■□□□□ 0.86
RPAIN-206ENST00000539417 AIMP1Q12904 312 aaKnown RBP20.39■□□□□ 0.85
RPAIN-206ENST00000539417 TWISTNBQ3B726 338 aaPredicted RBP20.39■□□□□ 0.85
RPAIN-206ENST00000539417 COPS6Q7L5N1 327 aa20.39■□□□□ 0.85
RPAIN-206ENST00000539417 XAGE3Q8WTP9 111 aa20.39■□□□□ 0.85
RPAIN-206ENST00000539417 MAP3K15Q6ZN16 1313 aa20.39■□□□□ 0.85
RPAIN-206ENST00000539417 NUP98P52948 1817 aa20.38■□□□□ 0.85
RPAIN-206ENST00000539417 NRXN2Q9P2S2 1712 aa20.37■□□□□ 0.85
RPAIN-206ENST00000539417 GOLGA2Q08379 1002 aa20.37■□□□□ 0.85
RPAIN-206ENST00000539417 PHAXQ9H814 394 aaKnown RBP20.37■□□□□ 0.85
RPAIN-206ENST00000539417 KIAA1551Q9HCM1 1747 aa20.37■□□□□ 0.85
RPAIN-206ENST00000539417 VAMP4O75379 141 aa20.37■□□□□ 0.85
RPAIN-206ENST00000539417 SERPINB2P05120 415 aa20.37■□□□□ 0.85
RPAIN-206ENST00000539417 CCDC24Q8N4L8 307 aa20.37■□□□□ 0.85
RPAIN-206ENST00000539417 DBF4Q9UBU7 674 aaPredicted RBP20.37■□□□□ 0.85
RPAIN-206ENST00000539417 C10orf71Q711Q0 1435 aa20.36■□□□□ 0.85
RPAIN-206ENST00000539417 KIF13BQ9NQT8 1826 aa20.36■□□□□ 0.85
RPAIN-206ENST00000539417 CARMIL3Q8ND23 1372 aa20.36■□□□□ 0.85
RPAIN-206ENST00000539417 SLFN5Q08AF3 891 aa20.36■□□□□ 0.85
RPAIN-206ENST00000539417 CLEC4GQ6UXB4 293 aa20.35■□□□□ 0.85
RPAIN-206ENST00000539417 KIF6Q6ZMV9 814 aa20.35■□□□□ 0.85
RPAIN-206ENST00000539417 MYH16Q9H6N6 1097 aa20.35■□□□□ 0.85
RPAIN-206ENST00000539417 CD2APQ9Y5K6 639 aa20.35■□□□□ 0.85
RPAIN-206ENST00000539417 ERVV-1B6SEH8 477 aa20.34■□□□□ 0.85
RPAIN-206ENST00000539417 WWC3Q9ULE0 1092 aa20.34■□□□□ 0.85
RPAIN-206ENST00000539417 N4BP2Q86UW6 1770 aaPredicted RBP20.33■□□□□ 0.85
RPAIN-206ENST00000539417 HNRNPUQ00839 825 aaKnown RBP eCLIP20.33■□□□□ 0.85
RPAIN-206ENST00000539417 G2E3Q7L622 706 aa20.33■□□□□ 0.85
RPAIN-206ENST00000539417 SETDB2Q96T68 719 aa20.33■□□□□ 0.85
RPAIN-206ENST00000539417 NIP7Q9Y221 180 aaKnown RBP eCLIP20.33■□□□□ 0.85
RPAIN-206ENST00000539417 UTRNP46939 3433 aa20.33■□□□□ 0.84
RPAIN-206ENST00000539417 PXDNLA1KZ92 1463 aa20.32■□□□□ 0.84
RPAIN-206ENST00000539417 FAM177BA6PVY3 158 aa20.32■□□□□ 0.84
RPAIN-206ENST00000539417 GPTP24298 496 aa20.32■□□□□ 0.84
RPAIN-206ENST00000539417 CCDC30Q5VVM6 783 aa20.32■□□□□ 0.84
RPAIN-206ENST00000539417 GIGYF2Q6Y7W6 1299 aaKnown RBP20.32■□□□□ 0.84
RPAIN-206ENST00000539417 TRMT2AQ8IZ69 625 aaKnown RBP20.32■□□□□ 0.84
RPAIN-206ENST00000539417 UBN2Q6ZU65 1347 aa20.32■□□□□ 0.84
RPAIN-206ENST00000539417 E9PSI1 815 aa20.31■□□□□ 0.84
RPAIN-206ENST00000539417 PRR5LQ6MZQ0 368 aa20.31■□□□□ 0.84
RPAIN-206ENST00000539417 ZNF428Q96B54 188 aa20.31■□□□□ 0.84
RPAIN-206ENST00000539417 HYPKQ9NX55 129 aa20.31■□□□□ 0.84
RPAIN-206ENST00000539417 ZNF652Q9Y2D9 606 aa20.31■□□□□ 0.84
RPAIN-206ENST00000539417 ANKRD31Q8N7Z5 1873 aa20.31■□□□□ 0.84
RPAIN-206ENST00000539417 A0A0G2JLW4 131 aa20.3■□□□□ 0.84
RPAIN-206ENST00000539417 ATP10DQ9P241 1426 aa20.3■□□□□ 0.84
RPAIN-206ENST00000539417 RGL2O15211 777 aa20.3■□□□□ 0.84
RPAIN-206ENST00000539417 ZNF34Q8IZ26 560 aa20.3■□□□□ 0.84
RPAIN-206ENST00000539417 DPEP1P16444 411 aa20.29■□□□□ 0.84
RPAIN-206ENST00000539417 CHRNA5P30532 468 aa20.29■□□□□ 0.84
RPAIN-206ENST00000539417 ARFGEF2Q9Y6D5 1785 aa20.29■□□□□ 0.84
RPAIN-206ENST00000539417 SLC4A2P04920 1241 aa20.28■□□□□ 0.84
RPAIN-206ENST00000539417 KCNA3P22001 575 aa20.28■□□□□ 0.84
RPAIN-206ENST00000539417 SUSD4Q5VX71 490 aa20.28■□□□□ 0.84
RPAIN-206ENST00000539417 ANKRD13DQ6ZTN6 518 aa20.28■□□□□ 0.84
RPAIN-206ENST00000539417 PLBD2Q8NHP8 589 aa20.28■□□□□ 0.84
RPAIN-206ENST00000539417 ANKRD36CQ5JPF3 1778 aa20.27■□□□□ 0.84
RPAIN-206ENST00000539417 YBX3P16989 372 aaKnown RBP eCLIP20.26■□□□□ 0.831e-7■□□□□ 10.3
RPAIN-206ENST00000539417 NBPF5PQ86XG9 351 aaPredicted RBP20.26■□□□□ 0.83
RPAIN-206ENST00000539417 NUTM1Q86Y26 1132 aa20.26■□□□□ 0.83
RPAIN-206ENST00000539417 CNBD1Q8NA66 436 aa20.26■□□□□ 0.83
RPAIN-206ENST00000539417 STK31Q9BXU1 1019 aa20.26■□□□□ 0.83
RPAIN-206ENST00000539417 TGFB2P61812 414 aa20.25■□□□□ 0.83
RPAIN-206ENST00000539417 TCIRG1Q13488 830 aa20.25■□□□□ 0.83
RPAIN-206ENST00000539417 PELP1Q8IZL8 1130 aaKnown RBP20.25■□□□□ 0.83
RPAIN-206ENST00000539417 COL11A2P13942 1736 aaPredicted RBP20.25■□□□□ 0.83
RPAIN-206ENST00000539417 ADCY9O60503 1353 aa20.25■□□□□ 0.83
RPAIN-206ENST00000539417 ABCC12Q96J65 1359 aa20.25■□□□□ 0.83
RPAIN-206ENST00000539417 ATP5J2-PTCD1G3V325 749 aa20.24■□□□□ 0.83
RPAIN-206ENST00000539417 BRCA1P38398 1863 aaKnown RBP20.24■□□□□ 0.83
RPAIN-206ENST00000539417 NTSR2O95665 410 aa20.24■□□□□ 0.83
RPAIN-206ENST00000539417 ERFEQ4G0M1 354 aa20.24■□□□□ 0.83
RPAIN-206ENST00000539417 RIC3Q7Z5B4 369 aa20.24■□□□□ 0.83
RPAIN-206ENST00000539417 SYNE4Q8N205 404 aa20.24■□□□□ 0.83
RPAIN-206ENST00000539417 TNRC6CQ9HCJ0 1690 aaKnown RBP20.23■□□□□ 0.83
RPAIN-206ENST00000539417 NLRP10Q86W26 655 aa20.23■□□□□ 0.83
RPAIN-206ENST00000539417 ISCA1Q9BUE6 129 aa20.23■□□□□ 0.83
RPAIN-206ENST00000539417 PI4KAP2A4QPH2 592 aa20.22■□□□□ 0.83
RPAIN-206ENST00000539417 FLIIQ13045 1269 aa20.22■□□□□ 0.83
RPAIN-206ENST00000539417 TPTE2Q6XPS3 522 aa20.22■□□□□ 0.83
RPAIN-206ENST00000539417 PI4KAP1Q8N8J0 262 aa20.22■□□□□ 0.83
RPAIN-206ENST00000539417 BRIP1Q9BX63 1249 aa20.22■□□□□ 0.83
RPAIN-206ENST00000539417 NPHP1O15259 732 aa20.21■□□□□ 0.83
RPAIN-206ENST00000539417 GPR162Q16538 588 aa20.21■□□□□ 0.83
RPAIN-206ENST00000539417 C2CD5Q86YS7 1000 aa20.21■□□□□ 0.83
RPAIN-206ENST00000539417 MYD88Q99836 296 aa20.21■□□□□ 0.83
RPAIN-206ENST00000539417 CHMP4AQ9BY43 222 aa20.21■□□□□ 0.83
RPAIN-206ENST00000539417 MAP3K2Q9Y2U5 619 aa20.21■□□□□ 0.83
RPAIN-206ENST00000539417 DLEC1Q9Y238 1755 aa20.2■□□□□ 0.82
RPAIN-206ENST00000539417 ST5P78524 1137 aa20.2■□□□□ 0.82
RPAIN-206ENST00000539417 HSP90AB3PQ58FF7 597 aa20.2■□□□□ 0.82
RPAIN-206ENST00000539417 C3orf67Q6ZVT6 689 aa20.2■□□□□ 0.82
RPAIN-206ENST00000539417 BCL2L13Q9BXK5 485 aa20.2■□□□□ 0.82
RPAIN-206ENST00000539417 PARP10Q53GL7 1025 aa20.19■□□□□ 0.82
RPAIN-206ENST00000539417 KSR2Q6VAB6 950 aa20.19■□□□□ 0.82
RPAIN-206ENST00000539417 SSH1Q8WYL5 1049 aa20.19■□□□□ 0.82
RPAIN-206ENST00000539417 ZBED9Q6R2W3 1325 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms