RNA–Protein interactions for RNA: ENST00000537750.5

SYNE1-236, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 2,850 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-236ENST00000537750 TMEM131LA2VDJ0 1609 aa17.76■□□□□ 0.43
SYNE1-236ENST00000537750 LARP1BQ659C4 914 aaKnown RBP17.76■□□□□ 0.43
SYNE1-236ENST00000537750 SOS1Q07889 1333 aaPredicted RBP17.76■□□□□ 0.43
SYNE1-236ENST00000537750 AOX1Q06278 1338 aa17.75■□□□□ 0.43
SYNE1-236ENST00000537750 PPP1R42Q7Z4L9 355 aa17.75■□□□□ 0.43
SYNE1-236ENST00000537750 RHPN1Q8TCX5 695 aa17.75■□□□□ 0.43
SYNE1-236ENST00000537750 UBTFL1P0CB47 393 aaPredicted RBP17.75■□□□□ 0.43
SYNE1-236ENST00000537750 SYCP1Q15431 976 aa17.75■□□□□ 0.43
SYNE1-236ENST00000537750 KIF18AQ8NI77 898 aa17.75■□□□□ 0.43
SYNE1-236ENST00000537750 TMEM51Q9NW97 253 aa17.75■□□□□ 0.43
SYNE1-236ENST00000537750 KRT85P78386 507 aa17.74■□□□□ 0.43
SYNE1-236ENST00000537750 GABPB1Q06547 395 aaPredicted RBP17.74■□□□□ 0.43
SYNE1-236ENST00000537750 ARID5BQ14865 1188 aa17.74■□□□□ 0.43
SYNE1-236ENST00000537750 PLA2G4DQ86XP0 818 aa17.74■□□□□ 0.43
SYNE1-236ENST00000537750 TXNDC2Q86VQ3 553 aa17.74■□□□□ 0.43
SYNE1-236ENST00000537750 CNTROBQ8N137 903 aa17.74■□□□□ 0.43
SYNE1-236ENST00000537750 MORC2Q9Y6X9 1032 aaPredicted RBP17.74■□□□□ 0.43
SYNE1-236ENST00000537750 USP27XA6NNY8 438 aa17.73■□□□□ 0.43
SYNE1-236ENST00000537750 SSH3Q8TE77 659 aa17.73■□□□□ 0.43
SYNE1-236ENST00000537750 DNAJC25Q9H1X3 360 aa17.73■□□□□ 0.43
SYNE1-236ENST00000537750 CLIP2Q9UDT6 1046 aa17.73■□□□□ 0.43
SYNE1-236ENST00000537750 PAXBP1Q9Y5B6 917 aa17.73■□□□□ 0.43
SYNE1-236ENST00000537750 CCDC61Q9Y6R9 512 aa17.73■□□□□ 0.43
SYNE1-236ENST00000537750 GOLGA6L4A6NEF3 574 aa17.72■□□□□ 0.43
SYNE1-236ENST00000537750 KMT5BQ4FZB7 885 aa17.72■□□□□ 0.43
SYNE1-236ENST00000537750 VPS53Q5VIR6 699 aa17.72■□□□□ 0.43
SYNE1-236ENST00000537750 CEP135Q66GS9 1140 aa17.72■□□□□ 0.43
SYNE1-236ENST00000537750 TPCN1Q9ULQ1 816 aa17.72■□□□□ 0.43
SYNE1-236ENST00000537750 CYP46A1Q9Y6A2 500 aa17.72■□□□□ 0.43
SYNE1-236ENST00000537750 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP17.72■□□□□ 0.43
SYNE1-236ENST00000537750 ZNF165P49910 485 aa17.72■□□□□ 0.43
SYNE1-236ENST00000537750 TCEANC2Q96MN5 208 aa17.72■□□□□ 0.43
SYNE1-236ENST00000537750 ZNF215Q9UL58 517 aaPredicted RBP17.72■□□□□ 0.43
SYNE1-236ENST00000537750 MAP3K19Q56UN5 1328 aa17.71■□□□□ 0.43
SYNE1-236ENST00000537750 NPM1P06748 294 aaKnown RBP eCLIP17.71■□□□□ 0.43
SYNE1-236ENST00000537750 TERF2Q15554 542 aa17.71■□□□□ 0.43
SYNE1-236ENST00000537750 CCDC30Q5VVM6 783 aa17.71■□□□□ 0.43
SYNE1-236ENST00000537750 TAF3Q5VWG9 929 aa17.71■□□□□ 0.43
SYNE1-236ENST00000537750 ZSWIM6Q9HCJ5 1215 aa17.71■□□□□ 0.43
SYNE1-236ENST00000537750 PREX1Q8TCU6 1659 aa17.71■□□□□ 0.42
SYNE1-236ENST00000537750 SRGAP3O43295 1099 aa17.7■□□□□ 0.42
SYNE1-236ENST00000537750 NR1I2O75469 434 aa17.7■□□□□ 0.42
SYNE1-236ENST00000537750 KLHL34Q8N239 644 aa17.7■□□□□ 0.42
SYNE1-236ENST00000537750 ZSCAN31Q96LW9 406 aaPredicted RBP17.7■□□□□ 0.42
SYNE1-236ENST00000537750 TDRD7Q8NHU6 1098 aaKnown RBP17.7■□□□□ 0.42
SYNE1-236ENST00000537750 ST7Q9NRC1 585 aa17.7■□□□□ 0.42
SYNE1-236ENST00000537750 SH2B1Q9NRF2 756 aaPredicted RBP17.7■□□□□ 0.42
SYNE1-236ENST00000537750 NUTM2FA1L443 756 aa17.69■□□□□ 0.42
SYNE1-236ENST00000537750 NPHP1O15259 732 aa17.69■□□□□ 0.42
SYNE1-236ENST00000537750 SPATA32Q96LK8 384 aa17.69■□□□□ 0.42
SYNE1-236ENST00000537750 PHAXQ9H814 394 aaKnown RBP17.69■□□□□ 0.42
SYNE1-236ENST00000537750 RAB11FIP3O75154 756 aa17.69■□□□□ 0.42
SYNE1-236ENST00000537750 KRT222Q8N1A0 295 aa17.69■□□□□ 0.42
SYNE1-236ENST00000537750 TRMT1Q9NXH9 659 aaKnown RBP17.69■□□□□ 0.42
SYNE1-236ENST00000537750 ERICH4A6NGS2 130 aa17.68■□□□□ 0.42
SYNE1-236ENST00000537750 VGLL3A8MV65 326 aa17.68■□□□□ 0.42
SYNE1-236ENST00000537750 KCNJ4P48050 445 aa17.68■□□□□ 0.42
SYNE1-236ENST00000537750 KIF1BPQ96EK5 621 aa17.68■□□□□ 0.42
SYNE1-236ENST00000537750 CLSTN2Q9H4D0 955 aa17.68■□□□□ 0.42
SYNE1-236ENST00000537750 TTC21AQ8NDW8 1320 aa17.68■□□□□ 0.42
SYNE1-236ENST00000537750 NBPF7P0C2Y1 421 aaPredicted RBP17.67■□□□□ 0.42
SYNE1-236ENST00000537750 FBXO38Q6PIJ6 1188 aa17.67■□□□□ 0.42
SYNE1-236ENST00000537750 LARP1Q6PKG0 1096 aaKnown RBP17.67■□□□□ 0.42
SYNE1-236ENST00000537750 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.67■□□□□ 0.42
SYNE1-236ENST00000537750 LRRC8AQ8IWT6 810 aa17.67■□□□□ 0.42
SYNE1-236ENST00000537750 ZNF397Q8NF99 534 aaPredicted RBP17.67■□□□□ 0.42
SYNE1-236ENST00000537750 LEO1Q8WVC0 666 aaPredicted RBP17.67■□□□□ 0.42
SYNE1-236ENST00000537750 ELP1O95163 1332 aa17.67■□□□□ 0.42
SYNE1-236ENST00000537750 ELF2Q15723 593 aa17.67■□□□□ 0.42
SYNE1-236ENST00000537750 BICD2Q8TD16 824 aa17.67■□□□□ 0.42
SYNE1-236ENST00000537750 PGBD1Q96JS3 809 aa17.67■□□□□ 0.42
SYNE1-236ENST00000537750 A0A087WWV3 80 aa17.66■□□□□ 0.42
SYNE1-236ENST00000537750 STK3Q13188 491 aa17.66■□□□□ 0.42
SYNE1-236ENST00000537750 POLA2Q14181 598 aa17.66■□□□□ 0.42
SYNE1-236ENST00000537750 DDX19AQ9NUU7 478 aaKnown RBP17.66■□□□□ 0.42
SYNE1-236ENST00000537750 PRR36Q9H6K5 1346 aa17.66■□□□□ 0.42
SYNE1-236ENST00000537750 ARHGEF10O15013 1369 aa17.66■□□□□ 0.42
SYNE1-236ENST00000537750 DLC1Q96QB1 1528 aa17.66■□□□□ 0.42
SYNE1-236ENST00000537750 RBM6P78332 1123 aaKnown RBP17.66■□□□□ 0.42
SYNE1-236ENST00000537750 PTPN14Q15678 1187 aa17.66■□□□□ 0.42
SYNE1-236ENST00000537750 DIP2CQ9Y2E4 1556 aa17.66■□□□□ 0.42
SYNE1-236ENST00000537750 NECTIN1Q15223 517 aa17.65■□□□□ 0.42
SYNE1-236ENST00000537750 USP16Q9Y5T5 823 aa17.65■□□□□ 0.42
SYNE1-236ENST00000537750 RBM43Q6ZSC3 357 aaKnown RBP17.65■□□□□ 0.42
SYNE1-236ENST00000537750 FILIP1Q7Z7B0 1213 aa17.65■□□□□ 0.42
SYNE1-236ENST00000537750 TM6SF1Q9BZW5 370 aa17.65■□□□□ 0.42
SYNE1-236ENST00000537750 SCAND2PQ9GZW5 306 aaPredicted RBP17.65■□□□□ 0.42
SYNE1-236ENST00000537750 RBM8AQ9Y5S9 174 aaKnown RBP17.65■□□□□ 0.42
SYNE1-236ENST00000537750 NPHP3Q7Z494 1330 aa17.65■□□□□ 0.42
SYNE1-236ENST00000537750 TTC21BQ7Z4L5 1316 aa17.65■□□□□ 0.42
SYNE1-236ENST00000537750 SKILP12757 684 aa17.65■□□□□ 0.42
SYNE1-236ENST00000537750 OS9Q13438 667 aaPredicted RBP17.65■□□□□ 0.42
SYNE1-236ENST00000537750 TAF6LQ9Y6J9 622 aa17.65■□□□□ 0.42
SYNE1-236ENST00000537750 CREB3L3Q68CJ9 461 aa17.64■□□□□ 0.41
SYNE1-236ENST00000537750 C11orf57Q6ZUT1 292 aaPredicted RBP17.64■□□□□ 0.41
SYNE1-236ENST00000537750 RIMS1Q86UR5 1692 aaKnown RBP17.64■□□□□ 0.41
SYNE1-236ENST00000537750 ZKSCAN1P17029 563 aaPredicted RBP17.64■□□□□ 0.41
SYNE1-236ENST00000537750 IRX5P78411 483 aaPredicted RBP17.64■□□□□ 0.41
SYNE1-236ENST00000537750 RUFY2Q8WXA3 655 aa17.64■□□□□ 0.41
SYNE1-236ENST00000537750 GLRX3O76003 335 aaKnown RBP17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms