RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 SH2B1Q9NRF2 756 aaPredicted RBP12.34□□□□□ -0.43
CLIP1-209ENST00000537178 CTAGE5O15320 804 aa12.34□□□□□ -0.43
CLIP1-209ENST00000537178 CCDC175P0C221 793 aa12.34□□□□□ -0.43
CLIP1-209ENST00000537178 TAOK3Q9H2K8 898 aa12.34□□□□□ -0.43
CLIP1-209ENST00000537178 SLC12A5Q9H2X9 1139 aa12.34□□□□□ -0.43
CLIP1-209ENST00000537178 AKAP2Q9Y2D5 859 aa12.34□□□□□ -0.43
CLIP1-209ENST00000537178 CCDC183Q5T5S1 534 aa12.34□□□□□ -0.43
CLIP1-209ENST00000537178 C20orf194Q5TEA3 1177 aa12.34□□□□□ -0.43
CLIP1-209ENST00000537178 LARP1Q6PKG0 1096 aaKnown RBP12.34□□□□□ -0.43
CLIP1-209ENST00000537178 PIBF1Q8WXW3 757 aa12.34□□□□□ -0.43
CLIP1-209ENST00000537178 ABCF2Q9UG63 623 aa12.34□□□□□ -0.43
CLIP1-209ENST00000537178 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.34□□□□□ -0.43
CLIP1-209ENST00000537178 NEMFO60524 1076 aa12.34□□□□□ -0.43
CLIP1-209ENST00000537178 CASQ1P31415 396 aa12.34□□□□□ -0.43
CLIP1-209ENST00000537178 KLHL10Q6JEL2 608 aa12.34□□□□□ -0.43
CLIP1-209ENST00000537178 NAA15Q9BXJ9 866 aaKnown RBP12.34□□□□□ -0.43
CLIP1-209ENST00000537178 CTCFLQ8NI51 663 aaPredicted RBP12.33□□□□□ -0.44
CLIP1-209ENST00000537178 POTEB2H3BUK9 544 aa12.33□□□□□ -0.44
CLIP1-209ENST00000537178 YEATS4O95619 227 aa12.33□□□□□ -0.44
CLIP1-209ENST00000537178 CALCOCO1Q9P1Z2 691 aa12.33□□□□□ -0.44
CLIP1-209ENST00000537178 CAMK4Q16566 473 aa12.32□□□□□ -0.44
CLIP1-209ENST00000537178 CCDC178Q5BJE1 867 aa12.32□□□□□ -0.44
CLIP1-209ENST00000537178 RAB11FIP3O75154 756 aa12.32□□□□□ -0.44
CLIP1-209ENST00000537178 FCHSD2O94868 740 aa12.32□□□□□ -0.44
CLIP1-209ENST00000537178 HMGB1P09429 215 aaKnown RBP12.32□□□□□ -0.44
CLIP1-209ENST00000537178 CETN1Q12798 172 aa12.32□□□□□ -0.44
CLIP1-209ENST00000537178 TMEM266Q2M3C6 531 aa12.32□□□□□ -0.44
CLIP1-209ENST00000537178 C8orf76Q96K31 380 aa12.32□□□□□ -0.44
CLIP1-209ENST00000537178 CEP63Q96MT8 703 aa12.32□□□□□ -0.44
CLIP1-209ENST00000537178 PRDM11Q9NQV5 511 aa12.32□□□□□ -0.44
CLIP1-209ENST00000537178 CABP1Q9NZU7 370 aa12.32□□□□□ -0.44
CLIP1-209ENST00000537178 SCLT1Q96NL6 688 aa12.32□□□□□ -0.44
CLIP1-209ENST00000537178 BTBD11A6QL63 1104 aa12.32□□□□□ -0.44
CLIP1-209ENST00000537178 IFIT1P09914 478 aaKnown RBP12.32□□□□□ -0.44
CLIP1-209ENST00000537178 TDRD12Q587J7 1177 aaKnown RBP12.32□□□□□ -0.44
CLIP1-209ENST00000537178 METTL24Q5JXM2 366 aa12.32□□□□□ -0.44
CLIP1-209ENST00000537178 MKNK2Q9HBH9 465 aa12.32□□□□□ -0.44
CLIP1-209ENST00000537178 DUSP27Q5VZP5 1158 aa12.31□□□□□ -0.44
CLIP1-209ENST00000537178 SMARCC1Q92922 1105 aaPredicted RBP12.31□□□□□ -0.44
CLIP1-209ENST00000537178 THEMISQ8N1K5 641 aaPredicted RBP12.31□□□□□ -0.44
CLIP1-209ENST00000537178 CTNNBL1Q8WYA6 563 aaPredicted RBP12.31□□□□□ -0.44
CLIP1-209ENST00000537178 CDK19Q9BWU1 502 aa12.31□□□□□ -0.44
CLIP1-209ENST00000537178 CGNQ9P2M7 1197 aaKnown RBP12.31□□□□□ -0.44
CLIP1-209ENST00000537178 MACROD2A1Z1Q3 448 aa12.31□□□□□ -0.44
CLIP1-209ENST00000537178 CCDC150Q8NCX0 1101 aa12.31□□□□□ -0.44
CLIP1-209ENST00000537178 NAPBQ9H115 298 aa12.31□□□□□ -0.44
CLIP1-209ENST00000537178 SYCP2Q9BX26 1530 aa12.31□□□□□ -0.44
CLIP1-209ENST00000537178 WDHD1O75717 1129 aaPredicted RBP12.31□□□□□ -0.44
CLIP1-209ENST00000537178 STARD3NLO95772 234 aa12.31□□□□□ -0.44
CLIP1-209ENST00000537178 NBPF1Q3BBV0 1214 aa12.31□□□□□ -0.44
CLIP1-209ENST00000537178 UBA5Q9GZZ9 404 aa12.31□□□□□ -0.44
CLIP1-209ENST00000537178 POLR3DP05423 398 aaPredicted RBP12.3□□□□□ -0.44
CLIP1-209ENST00000537178 MX1P20591 662 aa12.3□□□□□ -0.44
CLIP1-209ENST00000537178 GSDMDP57764 484 aa12.3□□□□□ -0.44
CLIP1-209ENST00000537178 UBE4AQ14139 1066 aa12.3□□□□□ -0.44
CLIP1-209ENST00000537178 IQCA1Q86XH1 822 aa12.3□□□□□ -0.44
CLIP1-209ENST00000537178 FEZ1Q99689 392 aa12.3□□□□□ -0.44
CLIP1-209ENST00000537178 GOPCQ9HD26 462 aa12.3□□□□□ -0.44
CLIP1-209ENST00000537178 MROH1Q8NDA8 1641 aa12.3□□□□□ -0.44
CLIP1-209ENST00000537178 CTNNA2P26232 953 aa12.3□□□□□ -0.44
CLIP1-209ENST00000537178 CRACR2BQ8N4Y2 399 aaPredicted RBP12.3□□□□□ -0.44
CLIP1-209ENST00000537178 CLIP2Q9UDT6 1046 aa12.3□□□□□ -0.44
CLIP1-209ENST00000537178 CLTCL1P53675 1640 aa12.3□□□□□ -0.44
CLIP1-209ENST00000537178 ERBINQ96RT1 1412 aa12.3□□□□□ -0.44
CLIP1-209ENST00000537178 RNF187Q5TA31 235 aaPredicted RBP12.3□□□□□ -0.44
CLIP1-209ENST00000537178 ALS2CR12Q96Q35 445 aa12.3□□□□□ -0.44
CLIP1-209ENST00000537178 EXOC6BQ9Y2D4 811 aa12.3□□□□□ -0.44
CLIP1-209ENST00000537178 GOLGA6L9A6NEM1 432 aa12.3□□□□□ -0.44
CLIP1-209ENST00000537178 CAVIN4Q5BKX8 364 aa12.3□□□□□ -0.44
CLIP1-209ENST00000537178 SPECC1LQ69YQ0 1117 aa12.3□□□□□ -0.44
CLIP1-209ENST00000537178 PRPF40BQ6NWY9 871 aaKnown RBP12.3□□□□□ -0.44
CLIP1-209ENST00000537178 NUP88Q99567 741 aaPredicted RBP12.3□□□□□ -0.44
CLIP1-209ENST00000537178 HLTFQ14527 1009 aaKnown RBP eCLIP12.29□□□□□ -0.44
CLIP1-209ENST00000537178 DDX19AQ9NUU7 478 aaKnown RBP12.29□□□□□ -0.44
CLIP1-209ENST00000537178 NPC1L1Q9UHC9 1359 aa12.29□□□□□ -0.44
CLIP1-209ENST00000537178 INO80Q9ULG1 1556 aaPredicted RBP12.29□□□□□ -0.44
CLIP1-209ENST00000537178 PIK3C2GO75747 1445 aa12.29□□□□□ -0.44
CLIP1-209ENST00000537178 CCDC194A0A1B0GVG4 234 aa12.29□□□□□ -0.44
CLIP1-209ENST00000537178 FSD2A1L4K1 749 aa12.29□□□□□ -0.44
CLIP1-209ENST00000537178 GIGYF2Q6Y7W6 1299 aaKnown RBP12.29□□□□□ -0.44
CLIP1-209ENST00000537178 NUTM1Q86Y26 1132 aa12.29□□□□□ -0.44
CLIP1-209ENST00000537178 TRPM2O94759 1503 aa12.29□□□□□ -0.44
CLIP1-209ENST00000537178 ANKRD18BA2A2Z9 1011 aa12.29□□□□□ -0.44
CLIP1-209ENST00000537178 MINDY4BA8MYZ0 360 aa12.29□□□□□ -0.44
CLIP1-209ENST00000537178 GRIPAP1Q4V328 841 aa12.29□□□□□ -0.44
CLIP1-209ENST00000537178 RNF41Q9H4P4 317 aaPredicted RBP12.29□□□□□ -0.44
CLIP1-209ENST00000537178 NFE2L2Q16236 605 aa12.29□□□□□ -0.44
CLIP1-209ENST00000537178 ZNF652Q9Y2D9 606 aa12.29□□□□□ -0.44
CLIP1-209ENST00000537178 TNNT1P13805 278 aa12.28□□□□□ -0.44
CLIP1-209ENST00000537178 CUL5Q93034 780 aa12.28□□□□□ -0.44
CLIP1-209ENST00000537178 MAP3K12Q12852 859 aa12.28□□□□□ -0.44
CLIP1-209ENST00000537178 PTPRTO14522 1441 aa12.28□□□□□ -0.44
CLIP1-209ENST00000537178 IBSPP21815 317 aaPredicted RBP12.28□□□□□ -0.44
CLIP1-209ENST00000537178 CNNM3Q8NE01 707 aa12.28□□□□□ -0.44
CLIP1-209ENST00000537178 BCCIPQ9P287 314 aaKnown RBP eCLIP12.28□□□□□ -0.44
CLIP1-209ENST00000537178 C6orf163Q5TEZ5 329 aa12.28□□□□□ -0.44
CLIP1-209ENST00000537178 HOMER2Q9NSB8 354 aa12.28□□□□□ -0.44
CLIP1-209ENST00000537178 SLC52A1Q9NWF4 448 aa12.28□□□□□ -0.44
CLIP1-209ENST00000537178 SPATA24Q86W54 205 aa12.27□□□□□ -0.44
CLIP1-209ENST00000537178 ATAD2Q6PL18 1390 aa12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms