RNA–Protein interactions for RNA: ENST00000537033.1

SYNE1-235, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 647 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-235ENST00000537033 RGL2O15211 777 aa18.4■□□□□ 0.54
SYNE1-235ENST00000537033 APLP1P51693 650 aa18.4■□□□□ 0.54
SYNE1-235ENST00000537033 RBM46Q8TBY0 533 aaKnown RBP18.4■□□□□ 0.54
SYNE1-235ENST00000537033 MIS18AQ9NYP9 233 aa18.4■□□□□ 0.54
SYNE1-235ENST00000537033 FER1L6Q2WGJ9 1857 aa18.39■□□□□ 0.54
SYNE1-235ENST00000537033 RALBP1Q15311 655 aa18.39■□□□□ 0.53
SYNE1-235ENST00000537033 CNKSR1Q969H4 720 aa18.39■□□□□ 0.53
SYNE1-235ENST00000537033 PLEKHF1Q96S99 279 aa18.39■□□□□ 0.53
SYNE1-235ENST00000537033 CEP350Q5VT06 3117 aa18.39■□□□□ 0.53
SYNE1-235ENST00000537033 NBPF26B4DH59 902 aa18.38■□□□□ 0.53
SYNE1-235ENST00000537033 C21orf2O43822 256 aa18.38■□□□□ 0.53
SYNE1-235ENST00000537033 STYK1Q6J9G0 422 aa18.38■□□□□ 0.53
SYNE1-235ENST00000537033 NBPF10Q6P3W6 841 aaKnown RBP18.38■□□□□ 0.53
SYNE1-235ENST00000537033 NBPF15Q8N660 670 aa18.38■□□□□ 0.53
SYNE1-235ENST00000537033 RRAGCQ9HB90 399 aa18.38■□□□□ 0.53
SYNE1-235ENST00000537033 ZNF219Q9P2Y4 722 aaPredicted RBP18.38■□□□□ 0.53
SYNE1-235ENST00000537033 DICER1Q9UPY3 1922 aaKnown RBP18.37■□□□□ 0.53
SYNE1-235ENST00000537033 NFKBIEO00221 500 aa18.37■□□□□ 0.53
SYNE1-235ENST00000537033 SOGA3Q5TF21 947 aa18.37■□□□□ 0.53
SYNE1-235ENST00000537033 MASTLQ96GX5 879 aa18.37■□□□□ 0.53
SYNE1-235ENST00000537033 NIP7Q9Y221 180 aaKnown RBP eCLIP18.37■□□□□ 0.53
SYNE1-235ENST00000537033 WDR90Q96KV7 1748 aa18.37■□□□□ 0.53
SYNE1-235ENST00000537033 SRGNP10124 158 aa18.36■□□□□ 0.53
SYNE1-235ENST00000537033 FSTL1Q12841 308 aa18.36■□□□□ 0.53
SYNE1-235ENST00000537033 TPTE2Q6XPS3 522 aa18.36■□□□□ 0.53
SYNE1-235ENST00000537033 SLX4Q8IY92 1834 aa18.36■□□□□ 0.53
SYNE1-235ENST00000537033 GLTPD2A6NH11 291 aa18.35■□□□□ 0.53
SYNE1-235ENST00000537033 PRPF40BQ6NWY9 871 aaKnown RBP18.35■□□□□ 0.53
SYNE1-235ENST00000537033 KIF6Q6ZMV9 814 aa18.35■□□□□ 0.53
SYNE1-235ENST00000537033 THUMPD2Q9BTF0 503 aaKnown RBP18.35■□□□□ 0.53
SYNE1-235ENST00000537033 TAOK3Q9H2K8 898 aa18.35■□□□□ 0.53
SYNE1-235ENST00000537033 PRELPP51888 382 aa18.34■□□□□ 0.53
SYNE1-235ENST00000537033 EIF4A1P60842 406 aaKnown RBP18.34■□□□□ 0.53
SYNE1-235ENST00000537033 NUP98P52948 1817 aa18.34■□□□□ 0.53
SYNE1-235ENST00000537033 LTBP3Q9NS15 1303 aa18.33■□□□□ 0.53
SYNE1-235ENST00000537033 GTF2E1P29083 439 aaPredicted RBP18.33■□□□□ 0.52
SYNE1-235ENST00000537033 LMOD3Q0VAK6 560 aa18.33■□□□□ 0.52
SYNE1-235ENST00000537033 ERFEQ4G0M1 354 aa18.33■□□□□ 0.52
SYNE1-235ENST00000537033 DPY19L2Q6NUT2 758 aa18.33■□□□□ 0.52
SYNE1-235ENST00000537033 NGEFQ8N5V2 710 aa18.33■□□□□ 0.52
SYNE1-235ENST00000537033 SMC1BQ8NDV3 1235 aa18.33■□□□□ 0.52
SYNE1-235ENST00000537033 FAM177BA6PVY3 158 aa18.32■□□□□ 0.52
SYNE1-235ENST00000537033 VEGFAP15692 232 aaPredicted RBP18.32■□□□□ 0.52
SYNE1-235ENST00000537033 NPR1P16066 1061 aa18.32■□□□□ 0.52
SYNE1-235ENST00000537033 TSPYL4Q9UJ04 414 aa18.32■□□□□ 0.52
SYNE1-235ENST00000537033 RRP7AQ9Y3A4 280 aaKnown RBP18.32■□□□□ 0.52
SYNE1-235ENST00000537033 MYBBP1AQ9BQG0 1328 aaKnown RBP18.31■□□□□ 0.52
SYNE1-235ENST00000537033 ERVV-1B6SEH8 477 aa18.31■□□□□ 0.52
SYNE1-235ENST00000537033 RIPK4P57078 832 aa18.31■□□□□ 0.52
SYNE1-235ENST00000537033 HLFQ16534 295 aa18.31■□□□□ 0.52
SYNE1-235ENST00000537033 NYXQ9GZU5 481 aa18.31■□□□□ 0.52
SYNE1-235ENST00000537033 ERBB4Q15303 1308 aa18.3■□□□□ 0.52
SYNE1-235ENST00000537033 MAP3K15Q6ZN16 1313 aa18.3■□□□□ 0.52
SYNE1-235ENST00000537033 MYL6BP14649 208 aa18.3■□□□□ 0.52
SYNE1-235ENST00000537033 DDX10Q13206 875 aaKnown RBP18.3■□□□□ 0.52
SYNE1-235ENST00000537033 CCDC93Q567U6 631 aa18.3■□□□□ 0.52
SYNE1-235ENST00000537033 KLRG2A4D1S0 409 aaPredicted RBP18.28■□□□□ 0.52
SYNE1-235ENST00000537033 ALDH1B1P30837 517 aa18.28■□□□□ 0.52
SYNE1-235ENST00000537033 IBTKQ9P2D0 1353 aaPredicted RBP18.28■□□□□ 0.52
SYNE1-235ENST00000537033 TMPOP42166 694 aaKnown RBP18.27■□□□□ 0.52
SYNE1-235ENST00000537033 WDR43Q15061 677 aaKnown RBP eCLIP18.27■□□□□ 0.52
SYNE1-235ENST00000537033 TTLL7Q6ZT98 887 aa18.27■□□□□ 0.52
SYNE1-235ENST00000537033 BABAM1Q9NWV8 329 aa18.27■□□□□ 0.52
SYNE1-235ENST00000537033 ZBTB3Q9H5J0 574 aa18.26■□□□□ 0.51
SYNE1-235ENST00000537033 RTKN2Q8IZC4 609 aa18.25■□□□□ 0.51
SYNE1-235ENST00000537033 ABCC12Q96J65 1359 aa18.25■□□□□ 0.51
SYNE1-235ENST00000537033 RIC1Q4ADV7 1423 aa18.24■□□□□ 0.51
SYNE1-235ENST00000537033 EIF2S2P20042 333 aaKnown RBP18.24■□□□□ 0.51
SYNE1-235ENST00000537033 GPTP24298 496 aa18.24■□□□□ 0.51
SYNE1-235ENST00000537033 FKBP4Q02790 459 aaKnown RBP eCLIP18.24■□□□□ 0.51
SYNE1-235ENST00000537033 NUTM1Q86Y26 1132 aa18.24■□□□□ 0.51
SYNE1-235ENST00000537033 CCDC146Q8IYE0 955 aa18.24■□□□□ 0.51
SYNE1-235ENST00000537033 DNAJC5GQ8N7S2 189 aa18.24■□□□□ 0.51
SYNE1-235ENST00000537033 C7orf43Q8WVR3 580 aa18.24■□□□□ 0.51
SYNE1-235ENST00000537033 RPGRQ92834 1020 aaKnown RBP18.24■□□□□ 0.51
SYNE1-235ENST00000537033 ANKRD36CQ5JPF3 1778 aa18.24■□□□□ 0.51
SYNE1-235ENST00000537033 NEUROD2Q15784 382 aa18.23■□□□□ 0.51
SYNE1-235ENST00000537033 UBN2Q6ZU65 1347 aa18.23■□□□□ 0.51
SYNE1-235ENST00000537033 CRY2Q49AN0 593 aa18.22■□□□□ 0.51
SYNE1-235ENST00000537033 GIGYF2Q6Y7W6 1299 aaKnown RBP18.22■□□□□ 0.51
SYNE1-235ENST00000537033 PPP1R42Q7Z4L9 355 aa18.22■□□□□ 0.51
SYNE1-235ENST00000537033 RUNDC1Q96C34 613 aa18.22■□□□□ 0.51
SYNE1-235ENST00000537033 KLRG1Q96E93 195 aa18.22■□□□□ 0.51
SYNE1-235ENST00000537033 SCN4AP35499 1836 aa18.21■□□□□ 0.51
SYNE1-235ENST00000537033 IQCA1LA6NCM1 817 aa18.21■□□□□ 0.51
SYNE1-235ENST00000537033 HTRA3P83110 453 aa18.21■□□□□ 0.51
SYNE1-235ENST00000537033 PARP10Q53GL7 1025 aa18.21■□□□□ 0.51
SYNE1-235ENST00000537033 ZNF34Q8IZ26 560 aa18.21■□□□□ 0.51
SYNE1-235ENST00000537033 ZNF277Q9NRM2 450 aaPredicted RBP18.21■□□□□ 0.51
SYNE1-235ENST00000537033 POTECB2RU33 542 aa18.2■□□□□ 0.5
SYNE1-235ENST00000537033 DDNO94850 711 aaPredicted RBP18.2■□□□□ 0.5
SYNE1-235ENST00000537033 SUSD4Q5VX71 490 aa18.2■□□□□ 0.5
SYNE1-235ENST00000537033 CC2D2BQ6DHV5 1058 aa18.2■□□□□ 0.5
SYNE1-235ENST00000537033 NTSR2O95665 410 aa18.19■□□□□ 0.5
SYNE1-235ENST00000537033 OLFM4Q6UX06 510 aa18.19■□□□□ 0.5
SYNE1-235ENST00000537033 RBM17Q96I25 401 aaKnown RBP18.19■□□□□ 0.5
SYNE1-235ENST00000537033 LAS1LQ9Y4W2 734 aaKnown RBP18.19■□□□□ 0.5
SYNE1-235ENST00000537033 IARSP41252 1262 aaKnown RBP18.18■□□□□ 0.5
SYNE1-235ENST00000537033 GRIPAP1Q4V328 841 aa18.18■□□□□ 0.5
SYNE1-235ENST00000537033 HSP90AB3PQ58FF7 597 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms