RNA–Protein interactions for RNA: ENST00000536212.1

VPS33A-203, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 567 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-203ENST00000536212 CLTCQ00610 1675 aaKnown RBP7.27□□□□□ -1.25
VPS33A-203ENST00000536212 SLC10A3P09131 477 aa7.26□□□□□ -1.25
VPS33A-203ENST00000536212 GJA5P36382 358 aa7.26□□□□□ -1.25
VPS33A-203ENST00000536212 RFC5P40937 340 aa7.26□□□□□ -1.25
VPS33A-203ENST00000536212 DZIP1LQ8IYY4 767 aaKnown RBP7.26□□□□□ -1.25
VPS33A-203ENST00000536212 CCDC82Q8N4S0 544 aa7.26□□□□□ -1.25
VPS33A-203ENST00000536212 BANK1Q8NDB2 785 aa7.26□□□□□ -1.25
VPS33A-203ENST00000536212 SPSB2Q99619 263 aa7.26□□□□□ -1.25
VPS33A-203ENST00000536212 ANTXR1Q9H6X2 564 aa7.26□□□□□ -1.25
VPS33A-203ENST00000536212 CDC42BPGQ6DT37 1551 aa7.25□□□□□ -1.25
VPS33A-203ENST00000536212 FAM181BA6NEQ2 426 aa7.25□□□□□ -1.25
VPS33A-203ENST00000536212 MOXD2PA6NHM9 499 aa7.25□□□□□ -1.25
VPS33A-203ENST00000536212 SPDYE5A6NIY4 337 aa7.25□□□□□ -1.25
VPS33A-203ENST00000536212 FYB1O15117 783 aa7.25□□□□□ -1.25
VPS33A-203ENST00000536212 KDM4AO75164 1064 aa7.25□□□□□ -1.25
VPS33A-203ENST00000536212 FRAT2O75474 233 aaPredicted RBP7.25□□□□□ -1.25
VPS33A-203ENST00000536212 TMEM259Q4ZIN3 620 aa7.25□□□□□ -1.25
VPS33A-203ENST00000536212 PPP2R2DQ66LE6 453 aa7.25□□□□□ -1.25
VPS33A-203ENST00000536212 SMC5Q8IY18 1101 aa7.25□□□□□ -1.25
VPS33A-203ENST00000536212 PNNQ9H307 717 aaKnown RBP7.25□□□□□ -1.25
VPS33A-203ENST00000536212 TERF2IPQ9NYB0 399 aa7.25□□□□□ -1.25
VPS33A-203ENST00000536212 ARHGEF40Q8TER5 1519 aa7.25□□□□□ -1.25
VPS33A-203ENST00000536212 ANKRD26Q9UPS8 1709 aa7.24□□□□□ -1.25
VPS33A-203ENST00000536212 TMEM131LA2VDJ0 1609 aa7.24□□□□□ -1.25
VPS33A-203ENST00000536212 DLC1Q96QB1 1528 aa7.24□□□□□ -1.25
VPS33A-203ENST00000536212 TRIM27P14373 513 aa7.24□□□□□ -1.25
VPS33A-203ENST00000536212 SNRPBP14678 240 aaKnown RBP7.24□□□□□ -1.25
VPS33A-203ENST00000536212 USP46P62068 366 aa7.24□□□□□ -1.25
VPS33A-203ENST00000536212 CSPP1Q1MSJ5 1256 aa7.24□□□□□ -1.25
VPS33A-203ENST00000536212 ZNF428Q96B54 188 aa7.24□□□□□ -1.25
VPS33A-203ENST00000536212 TRIM47Q96LD4 638 aa7.24□□□□□ -1.25
VPS33A-203ENST00000536212 BCL2L13Q9BXK5 485 aa7.24□□□□□ -1.25
VPS33A-203ENST00000536212 UPF2Q9HAU5 1272 aaKnown RBP7.24□□□□□ -1.25
VPS33A-203ENST00000536212 ATP13A2Q9NQ11 1180 aa7.24□□□□□ -1.25
VPS33A-203ENST00000536212 DDX19BQ9UMR2 479 aa7.24□□□□□ -1.25
VPS33A-203ENST00000536212 PPIP5K1Q6PFW1 1433 aa7.24□□□□□ -1.25
VPS33A-203ENST00000536212 YTHDC2Q9H6S0 1430 aaKnown RBP7.24□□□□□ -1.25
VPS33A-203ENST00000536212 RAD21O60216 631 aa7.23□□□□□ -1.25
VPS33A-203ENST00000536212 NDUFV2P19404 249 aa7.23□□□□□ -1.25
VPS33A-203ENST00000536212 GCGRP47871 477 aa7.23□□□□□ -1.25
VPS33A-203ENST00000536212 EXOSC9Q06265 439 aaKnown RBP7.23□□□□□ -1.25
VPS33A-203ENST00000536212 ALDH1L2Q3SY69 923 aa7.23□□□□□ -1.25
VPS33A-203ENST00000536212 ATF7IPQ6VMQ6 1270 aa7.23□□□□□ -1.25
VPS33A-203ENST00000536212 KCTD17Q8N5Z5 321 aa7.23□□□□□ -1.25
VPS33A-203ENST00000536212 SSH1Q8WYL5 1049 aa7.23□□□□□ -1.25
VPS33A-203ENST00000536212 GGNBP2Q9H3C7 697 aa7.23□□□□□ -1.25
VPS33A-203ENST00000536212 SENP2Q9HC62 589 aa7.23□□□□□ -1.25
VPS33A-203ENST00000536212 RICTORQ6R327 1708 aa7.23□□□□□ -1.25
VPS33A-203ENST00000536212 KIF16BQ96L93 1317 aa7.23□□□□□ -1.25
VPS33A-203ENST00000536212 FAM135BQ49AJ0 1406 aa7.22□□□□□ -1.25
VPS33A-203ENST00000536212 YEATS2Q9ULM3 1422 aa7.22□□□□□ -1.25
VPS33A-203ENST00000536212 IPO8O15397 1037 aaKnown RBP7.22□□□□□ -1.25
VPS33A-203ENST00000536212 TRAK2O60296 914 aa7.22□□□□□ -1.25
VPS33A-203ENST00000536212 DIAPH1O60610 1272 aaKnown RBP7.22□□□□□ -1.25
VPS33A-203ENST00000536212 RAPGEF3O95398 923 aa7.22□□□□□ -1.25
VPS33A-203ENST00000536212 SRPK2P78362 688 aaKnown RBP7.22□□□□□ -1.25
VPS33A-203ENST00000536212 FBXO31Q5XUX0 539 aaPredicted RBP7.22□□□□□ -1.25
VPS33A-203ENST00000536212 HDGFL2Q7Z4V5 671 aaPredicted RBP7.22□□□□□ -1.25
VPS33A-203ENST00000536212 TSR2Q969E8 191 aaKnown RBP7.22□□□□□ -1.25
VPS33A-203ENST00000536212 SMC4Q9NTJ3 1288 aa7.22□□□□□ -1.25
VPS33A-203ENST00000536212 ZBTB40Q9NUA8 1239 aa7.22□□□□□ -1.25
VPS33A-203ENST00000536212 FCF1Q9Y324 198 aaKnown RBP7.22□□□□□ -1.25
VPS33A-203ENST00000536212 ALKQ9UM73 1620 aa7.22□□□□□ -1.25
VPS33A-203ENST00000536212 PREX1Q8TCU6 1659 aa7.22□□□□□ -1.25
VPS33A-203ENST00000536212 PIK3R4Q99570 1358 aa7.21□□□□□ -1.25
VPS33A-203ENST00000536212 TTC24A2A3L6 582 aaPredicted RBP7.21□□□□□ -1.26
VPS33A-203ENST00000536212 U2SURPO15042 1029 aaKnown RBP7.21□□□□□ -1.26
VPS33A-203ENST00000536212 HOXA2O43364 376 aa7.21□□□□□ -1.26
VPS33A-203ENST00000536212 LILRB3O75022 631 aa7.21□□□□□ -1.26
VPS33A-203ENST00000536212 QPCTQ16769 361 aa7.21□□□□□ -1.26
VPS33A-203ENST00000536212 NUTM2DQ5VT03 806 aaPredicted RBP7.21□□□□□ -1.26
VPS33A-203ENST00000536212 PROSER2Q86WR7 435 aaPredicted RBP7.21□□□□□ -1.26
VPS33A-203ENST00000536212 FTSJ3Q8IY81 847 aaKnown RBP7.21□□□□□ -1.26
VPS33A-203ENST00000536212 PRAM1Q96QH2 718 aa7.21□□□□□ -1.26
VPS33A-203ENST00000536212 SNRKQ9NRH2 765 aa7.21□□□□□ -1.26
VPS33A-203ENST00000536212 NOB1Q9ULX3 412 aaKnown RBP7.21□□□□□ -1.26
VPS33A-203ENST00000536212 ATP7BP35670 1465 aa7.21□□□□□ -1.26
VPS33A-203ENST00000536212 REREQ9P2R6 1566 aa7.2□□□□□ -1.26
VPS33A-203ENST00000536212 NUTM2BA6NNL0 878 aaPredicted RBP7.2□□□□□ -1.26
VPS33A-203ENST00000536212 NUTM2EB1AL46 878 aaPredicted RBP7.2□□□□□ -1.26
VPS33A-203ENST00000536212 SMPD1P17405 629 aa7.2□□□□□ -1.26
VPS33A-203ENST00000536212 RIPK4P57078 832 aa7.2□□□□□ -1.26
VPS33A-203ENST00000536212 PUS10Q3MIT2 529 aaKnown RBP7.2□□□□□ -1.26
VPS33A-203ENST00000536212 NUTM2AQ8IVF1 878 aaPredicted RBP7.2□□□□□ -1.26
VPS33A-203ENST00000536212 TMEM57Q8N5G2 664 aa7.2□□□□□ -1.26
VPS33A-203ENST00000536212 ARHGAP45Q92619 1136 aa7.2□□□□□ -1.26
VPS33A-203ENST00000536212 POM121Q96HA1 1249 aa7.2□□□□□ -1.26
VPS33A-203ENST00000536212 CDK19Q9BWU1 502 aa7.2□□□□□ -1.26
VPS33A-203ENST00000536212 STK26Q9P289 416 aa7.2□□□□□ -1.26
VPS33A-203ENST00000536212 BRPF3Q9ULD4 1205 aa7.2□□□□□ -1.26
VPS33A-203ENST00000536212 AGLP35573 1532 aa7.2□□□□□ -1.26
VPS33A-203ENST00000536212 AATKQ6ZMQ8 1374 aa7.2□□□□□ -1.26
VPS33A-203ENST00000536212 CPSF1Q10570 1443 aaKnown RBP7.19□□□□□ -1.26
VPS33A-203ENST00000536212 PTCH1Q13635 1447 aa7.19□□□□□ -1.26
VPS33A-203ENST00000536212 ZNF853P0CG23 659 aa7.19□□□□□ -1.26
VPS33A-203ENST00000536212 FDX1P10109 184 aa7.19□□□□□ -1.26
VPS33A-203ENST00000536212 RBM25P49756 843 aaKnown RBP7.19□□□□□ -1.26
VPS33A-203ENST00000536212 NUCB1Q02818 461 aa7.19□□□□□ -1.26
VPS33A-203ENST00000536212 PRPF38BQ5VTL8 546 aaKnown RBP7.19□□□□□ -1.26
VPS33A-203ENST00000536212 ITPRIPQ8IWB1 547 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms