RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 PRAMEF22A3QJZ6 481 aa17.32■□□□□ 0.36
RTN3-207ENST00000536011 C1QBPQ07021 282 aaKnown RBP17.32■□□□□ 0.36
RTN3-207ENST00000536011 NBPF5PQ86XG9 351 aaPredicted RBP17.32■□□□□ 0.36
RTN3-207ENST00000536011 ZNF622Q969S3 477 aaKnown RBP eCLIP17.32■□□□□ 0.363e-7■■■■□ 19.7
RTN3-207ENST00000536011 ANKRD31Q8N7Z5 1873 aa17.31■□□□□ 0.36
RTN3-207ENST00000536011 KDM3BQ7LBC6 1761 aa17.31■□□□□ 0.36
RTN3-207ENST00000536011 NMRK2Q9NPI5 230 aa17.31■□□□□ 0.36
RTN3-207ENST00000536011 TNRC6CQ9HCJ0 1690 aaKnown RBP17.31■□□□□ 0.36
RTN3-207ENST00000536011 SBF1O95248 1867 aa17.31■□□□□ 0.36
RTN3-207ENST00000536011 PIP4K2AP48426 406 aaPredicted RBP17.3■□□□□ 0.36
RTN3-207ENST00000536011 RASSF7Q02833 373 aa17.3■□□□□ 0.36
RTN3-207ENST00000536011 SOGA3Q5TF21 947 aa17.3■□□□□ 0.36
RTN3-207ENST00000536011 CNKSR1Q969H4 720 aa17.3■□□□□ 0.36
RTN3-207ENST00000536011 COL11A2P13942 1736 aaPredicted RBP17.3■□□□□ 0.36
RTN3-207ENST00000536011 LMOD3Q0VAK6 560 aa17.29■□□□□ 0.36
RTN3-207ENST00000536011 STYK1Q6J9G0 422 aa17.29■□□□□ 0.36
RTN3-207ENST00000536011 RBM46Q8TBY0 533 aaKnown RBP17.29■□□□□ 0.36
RTN3-207ENST00000536011 MIS18AQ9NYP9 233 aa17.29■□□□□ 0.36
RTN3-207ENST00000536011 NBPF26B4DH59 902 aa17.28■□□□□ 0.36
RTN3-207ENST00000536011 APLP1P51693 650 aa17.28■□□□□ 0.36
RTN3-207ENST00000536011 NBPF10Q6P3W6 841 aaKnown RBP17.28■□□□□ 0.36
RTN3-207ENST00000536011 TPTE2Q6XPS3 522 aa17.28■□□□□ 0.36
RTN3-207ENST00000536011 NBPF15Q8N660 670 aa17.28■□□□□ 0.36
RTN3-207ENST00000536011 MASTLQ96GX5 879 aa17.28■□□□□ 0.36
RTN3-207ENST00000536011 NIP7Q9Y221 180 aaKnown RBP eCLIP17.28■□□□□ 0.36
RTN3-207ENST00000536011 MYBBP1AQ9BQG0 1328 aaKnown RBP17.27■□□□□ 0.36
RTN3-207ENST00000536011 SRGNP10124 158 aa17.27■□□□□ 0.36
RTN3-207ENST00000536011 EIF4A1P60842 406 aaKnown RBP17.27■□□□□ 0.36
RTN3-207ENST00000536011 CCDC24Q8N4L8 307 aa17.27■□□□□ 0.36
RTN3-207ENST00000536011 TIAM2Q8IVF5 1701 aa17.27■□□□□ 0.35
RTN3-207ENST00000536011 NFKBIEO00221 500 aa17.26■□□□□ 0.35
RTN3-207ENST00000536011 C21orf2O43822 256 aa17.26■□□□□ 0.35
RTN3-207ENST00000536011 FSTL1Q12841 308 aa17.26■□□□□ 0.35
RTN3-207ENST00000536011 KIF6Q6ZMV9 814 aa17.26■□□□□ 0.35
RTN3-207ENST00000536011 ERBB4Q15303 1308 aa17.25■□□□□ 0.35
RTN3-207ENST00000536011 LTBP3Q9NS15 1303 aa17.25■□□□□ 0.35
RTN3-207ENST00000536011 ERVV-1B6SEH8 477 aa17.25■□□□□ 0.35
RTN3-207ENST00000536011 DDX10Q13206 875 aaKnown RBP17.25■□□□□ 0.35
RTN3-207ENST00000536011 PRPF40BQ6NWY9 871 aaKnown RBP17.25■□□□□ 0.35
RTN3-207ENST00000536011 THUMPD2Q9BTF0 503 aaKnown RBP17.25■□□□□ 0.35
RTN3-207ENST00000536011 NYXQ9GZU5 481 aa17.25■□□□□ 0.35
RTN3-207ENST00000536011 BABAM1Q9NWV8 329 aa17.25■□□□□ 0.35
RTN3-207ENST00000536011 TSPYL4Q9UJ04 414 aa17.25■□□□□ 0.35
RTN3-207ENST00000536011 ARFGEF2Q9Y6D5 1785 aa17.25■□□□□ 0.35
RTN3-207ENST00000536011 GLTPD2A6NH11 291 aa17.24■□□□□ 0.35
RTN3-207ENST00000536011 NPR1P16066 1061 aa17.24■□□□□ 0.35
RTN3-207ENST00000536011 GTF2E1P29083 439 aaPredicted RBP17.24■□□□□ 0.35
RTN3-207ENST00000536011 RIPK4P57078 832 aa17.24■□□□□ 0.35
RTN3-207ENST00000536011 TAOK3Q9H2K8 898 aa17.24■□□□□ 0.35
RTN3-207ENST00000536011 ZNF219Q9P2Y4 722 aaPredicted RBP17.24■□□□□ 0.35
RTN3-207ENST00000536011 WDR43Q15061 677 aaKnown RBP eCLIP17.23■□□□□ 0.35
RTN3-207ENST00000536011 DPY19L2Q6NUT2 758 aa17.23■□□□□ 0.35
RTN3-207ENST00000536011 RRAGCQ9HB90 399 aa17.23■□□□□ 0.35
RTN3-207ENST00000536011 MAP3K15Q6ZN16 1313 aa17.22■□□□□ 0.35
RTN3-207ENST00000536011 FER1L6Q2WGJ9 1857 aa17.22■□□□□ 0.35
RTN3-207ENST00000536011 VEGFAP15692 232 aaPredicted RBP17.22■□□□□ 0.35
RTN3-207ENST00000536011 ERFEQ4G0M1 354 aa17.22■□□□□ 0.35
RTN3-207ENST00000536011 NGEFQ8N5V2 710 aa17.22■□□□□ 0.35
RTN3-207ENST00000536011 RRP7AQ9Y3A4 280 aaKnown RBP17.22■□□□□ 0.35
RTN3-207ENST00000536011 CACNA1SQ13698 1873 aa17.21■□□□□ 0.35
RTN3-207ENST00000536011 IBTKQ9P2D0 1353 aaPredicted RBP17.21■□□□□ 0.35
RTN3-207ENST00000536011 KLRG2A4D1S0 409 aaPredicted RBP17.21■□□□□ 0.35
RTN3-207ENST00000536011 MYL6BP14649 208 aa17.21■□□□□ 0.35
RTN3-207ENST00000536011 TMPOP42166 694 aaKnown RBP17.21■□□□□ 0.35
RTN3-207ENST00000536011 HLFQ16534 295 aa17.21■□□□□ 0.35
RTN3-207ENST00000536011 CCDC93Q567U6 631 aa17.21■□□□□ 0.35
RTN3-207ENST00000536011 SMC1BQ8NDV3 1235 aa17.21■□□□□ 0.35
RTN3-207ENST00000536011 CCDC88AQ3V6T2 1871 aa17.2■□□□□ 0.34
RTN3-207ENST00000536011 SLX4Q8IY92 1834 aa17.2■□□□□ 0.34
RTN3-207ENST00000536011 FAM177BA6PVY3 158 aa17.2■□□□□ 0.34
RTN3-207ENST00000536011 PRELPP51888 382 aa17.2■□□□□ 0.34
RTN3-207ENST00000536011 DICER1Q9UPY3 1922 aaKnown RBP17.19■□□□□ 0.34
RTN3-207ENST00000536011 ALDH1B1P30837 517 aa17.19■□□□□ 0.34
RTN3-207ENST00000536011 RUNDC1Q96C34 613 aa17.18■□□□□ 0.34
RTN3-207ENST00000536011 ZBTB3Q9H5J0 574 aa17.18■□□□□ 0.34
RTN3-207ENST00000536011 NUP98P52948 1817 aa17.18■□□□□ 0.34
RTN3-207ENST00000536011 RIC1Q4ADV7 1423 aa17.18■□□□□ 0.34
RTN3-207ENST00000536011 TTLL7Q6ZT98 887 aa17.17■□□□□ 0.34
RTN3-207ENST00000536011 RTKN2Q8IZC4 609 aa17.17■□□□□ 0.34
RTN3-207ENST00000536011 WDR90Q96KV7 1748 aa17.17■□□□□ 0.34
RTN3-207ENST00000536011 PARP10Q53GL7 1025 aa17.16■□□□□ 0.34
RTN3-207ENST00000536011 GIGYF2Q6Y7W6 1299 aaKnown RBP17.16■□□□□ 0.34
RTN3-207ENST00000536011 PPP1R42Q7Z4L9 355 aa17.16■□□□□ 0.34
RTN3-207ENST00000536011 C7orf43Q8WVR3 580 aa17.16■□□□□ 0.34
RTN3-207ENST00000536011 RPGRQ92834 1020 aaKnown RBP17.16■□□□□ 0.34
RTN3-207ENST00000536011 EIF2S2P20042 333 aaKnown RBP17.15■□□□□ 0.34
RTN3-207ENST00000536011 GPTP24298 496 aa17.15■□□□□ 0.34
RTN3-207ENST00000536011 FKBP4Q02790 459 aaKnown RBP eCLIP17.15■□□□□ 0.34
RTN3-207ENST00000536011 NEUROD2Q15784 382 aa17.15■□□□□ 0.34
RTN3-207ENST00000536011 CRY2Q49AN0 593 aa17.15■□□□□ 0.34
RTN3-207ENST00000536011 CCDC146Q8IYE0 955 aa17.15■□□□□ 0.34
RTN3-207ENST00000536011 ABCC12Q96J65 1359 aa17.15■□□□□ 0.34
RTN3-207ENST00000536011 CC2D2BQ6DHV5 1058 aa17.14■□□□□ 0.33
RTN3-207ENST00000536011 NUTM1Q86Y26 1132 aa17.14■□□□□ 0.33
RTN3-207ENST00000536011 IQCA1LA6NCM1 817 aa17.13■□□□□ 0.33
RTN3-207ENST00000536011 GRIPAP1Q4V328 841 aa17.13■□□□□ 0.33
RTN3-207ENST00000536011 HSP90AB3PQ58FF7 597 aa17.13■□□□□ 0.33
RTN3-207ENST00000536011 ZNF34Q8IZ26 560 aa17.13■□□□□ 0.33
RTN3-207ENST00000536011 RNF123Q5XPI4 1314 aa17.13■□□□□ 0.33
RTN3-207ENST00000536011 UBN2Q6ZU65 1347 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms