RNA–Protein interactions for RNA: ENST00000535906.1

VPS33B-202, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2 BASIC

Gene VPS33B, Length 2,420 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-202ENST00000535906 FSD2A1L4K1 749 aa16.32■□□□□ 0.2
VPS33B-202ENST00000535906 NEURL1BA8MQ27 555 aa16.32■□□□□ 0.2
VPS33B-202ENST00000535906 ANO2Q9NQ90 1003 aa16.32■□□□□ 0.2
VPS33B-202ENST00000535906 GBP4Q96PP9 640 aa16.31■□□□□ 0.2
VPS33B-202ENST00000535906 COL5A2P05997 1499 aaPredicted RBP16.31■□□□□ 0.2
VPS33B-202ENST00000535906 ST18O60284 1047 aa16.31■□□□□ 0.2
VPS33B-202ENST00000535906 NEXNQ0ZGT2 675 aa16.31■□□□□ 0.2
VPS33B-202ENST00000535906 ANKRD13DQ6ZTN6 518 aa16.31■□□□□ 0.2
VPS33B-202ENST00000535906 ZCRB1Q8TBF4 217 aaKnown RBP16.31■□□□□ 0.2
VPS33B-202ENST00000535906 MYD88Q99836 296 aa16.31■□□□□ 0.2
VPS33B-202ENST00000535906 METTL22Q9BUU2 404 aaPredicted RBP16.31■□□□□ 0.2
VPS33B-202ENST00000535906 AK9Q5TCS8 1911 aa16.31■□□□□ 0.2
VPS33B-202ENST00000535906 GOLGA6L3A6NEY3 463 aa16.3■□□□□ 0.2
VPS33B-202ENST00000535906 GCKRQ14397 625 aa16.3■□□□□ 0.2
VPS33B-202ENST00000535906 CLASRPQ8N2M8 674 aaKnown RBP16.3■□□□□ 0.2
VPS33B-202ENST00000535906 PALD1Q9ULE6 856 aa16.3■□□□□ 0.2
VPS33B-202ENST00000535906 USP42Q9H9J4 1324 aaKnown RBP16.3■□□□□ 0.2
VPS33B-202ENST00000535906 PCDH11XQ9BZA7 1347 aa16.3■□□□□ 0.2
VPS33B-202ENST00000535906 PCDH11YQ9BZA8 1340 aa16.3■□□□□ 0.2
VPS33B-202ENST00000535906 PARP4Q9UKK3 1724 aaKnown RBP16.29■□□□□ 0.2
VPS33B-202ENST00000535906 GZF1Q9H116 711 aaPredicted RBP16.29■□□□□ 0.2
VPS33B-202ENST00000535906 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.29■□□□□ 0.2
VPS33B-202ENST00000535906 GLI3P10071 1580 aa16.29■□□□□ 0.2
VPS33B-202ENST00000535906 TTC41PQ6P2S7 1318 aa16.29■□□□□ 0.2
VPS33B-202ENST00000535906 ERC1Q8IUD2 1116 aa16.28■□□□□ 0.2
VPS33B-202ENST00000535906 SASH1O94885 1247 aa16.28■□□□□ 0.2
VPS33B-202ENST00000535906 PTMSP20962 102 aa16.28■□□□□ 0.2
VPS33B-202ENST00000535906 EPHA10Q5JZY3 1008 aa16.28■□□□□ 0.2
VPS33B-202ENST00000535906 CNTROBQ8N137 903 aa16.28■□□□□ 0.2
VPS33B-202ENST00000535906 ABCA3Q99758 1704 aa16.28■□□□□ 0.2
VPS33B-202ENST00000535906 NEK4P51957 841 aa16.27■□□□□ 0.2
VPS33B-202ENST00000535906 STRN4Q9NRL3 753 aa16.27■□□□□ 0.2
VPS33B-202ENST00000535906 GLRX3O76003 335 aaKnown RBP16.27■□□□□ 0.19
VPS33B-202ENST00000535906 MCCP23508 829 aa16.27■□□□□ 0.19
VPS33B-202ENST00000535906 SSFA2P28290 1259 aa16.27■□□□□ 0.19
VPS33B-202ENST00000535906 JARID2Q92833 1246 aaPredicted RBP16.27■□□□□ 0.19
VPS33B-202ENST00000535906 CARD10Q9BWT7 1032 aa16.27■□□□□ 0.19
VPS33B-202ENST00000535906 XRCC6P12956 609 aaKnown RBP eCLIP16.26■□□□□ 0.19
VPS33B-202ENST00000535906 IL2RBP14784 551 aa16.26■□□□□ 0.19
VPS33B-202ENST00000535906 KLHDC4Q8TBB5 520 aa16.26■□□□□ 0.19
VPS33B-202ENST00000535906 SGSM2O43147 1006 aa16.26■□□□□ 0.19
VPS33B-202ENST00000535906 IFIT2P09913 472 aaKnown RBP16.26■□□□□ 0.19
VPS33B-202ENST00000535906 ANAPC15P60006 121 aa16.26■□□□□ 0.19
VPS33B-202ENST00000535906 G3BP1Q13283 466 aaKnown RBP eCLIP16.26■□□□□ 0.19
VPS33B-202ENST00000535906 AACSQ86V21 672 aa16.26■□□□□ 0.19
VPS33B-202ENST00000535906 DDX54Q8TDD1 881 aaKnown RBP16.26■□□□□ 0.19
VPS33B-202ENST00000535906 SIL1Q9H173 461 aa16.26■□□□□ 0.19
VPS33B-202ENST00000535906 ECHDC1Q9NTX5 307 aa16.26■□□□□ 0.19
VPS33B-202ENST00000535906 ERVV-2B6SEH9 535 aa16.25■□□□□ 0.19
VPS33B-202ENST00000535906 NKX1-1Q15270 411 aaPredicted RBP16.25■□□□□ 0.19
VPS33B-202ENST00000535906 SKOR2Q2VWA4 1001 aaPredicted RBP16.25■□□□□ 0.19
VPS33B-202ENST00000535906 CLEC17AQ6ZS10 378 aa16.25■□□□□ 0.19
VPS33B-202ENST00000535906 FAM43AQ8N2R8 423 aa16.25■□□□□ 0.19
VPS33B-202ENST00000535906 ZGPATQ8N5A5 531 aaKnown RBP16.25■□□□□ 0.19
VPS33B-202ENST00000535906 EAF2Q96CJ1 260 aaPredicted RBP16.25■□□□□ 0.19
VPS33B-202ENST00000535906 LAMB4A4D0S4 1761 aa16.25■□□□□ 0.19
VPS33B-202ENST00000535906 NBPF26B4DH59 902 aa16.25■□□□□ 0.19
VPS33B-202ENST00000535906 ATP5J2-PTCD1G3V325 749 aa16.25■□□□□ 0.19
VPS33B-202ENST00000535906 PTCD1O75127 700 aaKnown RBP16.25■□□□□ 0.19
VPS33B-202ENST00000535906 NBPF14Q5TI25 921 aa16.25■□□□□ 0.19
VPS33B-202ENST00000535906 NBPF10Q6P3W6 841 aaKnown RBP16.25■□□□□ 0.19
VPS33B-202ENST00000535906 NBPF15Q8N660 670 aa16.25■□□□□ 0.19
VPS33B-202ENST00000535906 ISY1Q9ULR0 285 aaKnown RBP16.25■□□□□ 0.19
VPS33B-202ENST00000535906 ARFGEF2Q9Y6D5 1785 aa16.24■□□□□ 0.19
VPS33B-202ENST00000535906 IL17RAQ96F46 866 aa16.24■□□□□ 0.19
VPS33B-202ENST00000535906 EPB41L2O43491 1005 aaKnown RBP16.24■□□□□ 0.19
VPS33B-202ENST00000535906 HSPA4P34932 840 aa16.24■□□□□ 0.19
VPS33B-202ENST00000535906 EVA1CP58658 441 aa16.24■□□□□ 0.19
VPS33B-202ENST00000535906 CWC27Q6UX04 472 aaKnown RBP16.24■□□□□ 0.19
VPS33B-202ENST00000535906 AFDNP55196 1824 aaKnown RBP16.24■□□□□ 0.19
VPS33B-202ENST00000535906 SHANK3Q9BYB0 1731 aa16.23■□□□□ 0.19
VPS33B-202ENST00000535906 PKP1Q13835 747 aa16.23■□□□□ 0.19
VPS33B-202ENST00000535906 UBE3BQ7Z3V4 1068 aa16.23■□□□□ 0.19
VPS33B-202ENST00000535906 PLBD2Q8NHP8 589 aa16.23■□□□□ 0.19
VPS33B-202ENST00000535906 GPATCH3Q96I76 525 aa16.23■□□□□ 0.19
VPS33B-202ENST00000535906 MRE11P49959 708 aa16.23■□□□□ 0.19
VPS33B-202ENST00000535906 TMX3Q96JJ7 454 aa16.23■□□□□ 0.19
VPS33B-202ENST00000535906 CCDC8Q9H0W5 538 aaPredicted RBP16.23■□□□□ 0.19
VPS33B-202ENST00000535906 UBR2Q8IWV8 1755 aa16.22■□□□□ 0.19
VPS33B-202ENST00000535906 RAD50Q92878 1312 aa16.22■□□□□ 0.19
VPS33B-202ENST00000535906 LSG1Q9H089 658 aaKnown RBP16.22■□□□□ 0.19
VPS33B-202ENST00000535906 CWC22Q9HCG8 908 aaKnown RBP16.22■□□□□ 0.19
VPS33B-202ENST00000535906 TLR7Q9NYK1 1049 aaKnown RBP16.22■□□□□ 0.19
VPS33B-202ENST00000535906 NHSL1Q5SYE7 1610 aa16.22■□□□□ 0.19
VPS33B-202ENST00000535906 KCPQ6ZWJ8 1503 aa16.22■□□□□ 0.19
VPS33B-202ENST00000535906 A0A087WZG4 1122 aa16.21■□□□□ 0.19
VPS33B-202ENST00000535906 A1BGP04217 495 aa16.21■□□□□ 0.19
VPS33B-202ENST00000535906 CYP2E1P05181 493 aaPredicted RBP16.21■□□□□ 0.19
VPS33B-202ENST00000535906 ARXQ96QS3 562 aa16.21■□□□□ 0.19
VPS33B-202ENST00000535906 UPF3BQ9BZI7 483 aaKnown RBP16.21■□□□□ 0.19
VPS33B-202ENST00000535906 ERBB4Q15303 1308 aa16.21■□□□□ 0.18
VPS33B-202ENST00000535906 RFX5P48382 616 aaPredicted RBP16.2■□□□□ 0.18
VPS33B-202ENST00000535906 CASP7P55210 303 aa16.2■□□□□ 0.18
VPS33B-202ENST00000535906 NUCB2P80303 420 aa16.2■□□□□ 0.18
VPS33B-202ENST00000535906 TTLL7Q6ZT98 887 aa16.2■□□□□ 0.18
VPS33B-202ENST00000535906 GOLGA6L22H0YM25 854 aa16.2■□□□□ 0.18
VPS33B-202ENST00000535906 MCM2P49736 904 aa16.2■□□□□ 0.18
VPS33B-202ENST00000535906 PTPN12Q05209 780 aaKnown RBP16.2■□□□□ 0.18
VPS33B-202ENST00000535906 RABL6Q3YEC7 729 aaPredicted RBP16.2■□□□□ 0.18
VPS33B-202ENST00000535906 DIAPH3Q9NSV4 1193 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms