RNA–Protein interactions for RNA: ENST00000534106.2

CHMP4A-208, Transcript of charged multivesicular body protein 4A, human

TSL 5

Gene CHMP4A, Length 370 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHMP4A-208	ENST00000534106	TIMMDC1	Q9NPL8	285 aa		4.92	□□□□□ -1.62
CHMP4A-208	ENST00000534106	DYRK1B	Q9Y463	629 aa		4.92	□□□□□ -1.62
CHMP4A-208	ENST00000534106	PCDHB11	Q9Y5F2	797 aa		4.92	□□□□□ -1.62
CHMP4A-208	ENST00000534106	WASHC2C	Q9Y4E1	1318 aa		4.92	□□□□□ -1.62
CHMP4A-208	ENST00000534106	NEURL4	Q96JN8	1562 aa		4.91	□□□□□ -1.62
CHMP4A-208	ENST00000534106	MSTN	O14793	375 aa		4.91	□□□□□ -1.62
CHMP4A-208	ENST00000534106	FBXO45	P0C2W1	286 aa		4.91	□□□□□ -1.62
CHMP4A-208	ENST00000534106	RXRB	P28702	533 aa		4.91	□□□□□ -1.62
CHMP4A-208	ENST00000534106	GTF2E1	P29083	439 aa	Predicted RBP	4.91	□□□□□ -1.62
CHMP4A-208	ENST00000534106	MCCD1	P59942	119 aa	Predicted RBP	4.91	□□□□□ -1.62
CHMP4A-208	ENST00000534106	MEX3C	Q5U5Q3	659 aa	Known RBP	4.91	□□□□□ -1.62
CHMP4A-208	ENST00000534106	PROSER2	Q86WR7	435 aa	Predicted RBP	4.91	□□□□□ -1.62
CHMP4A-208	ENST00000534106	GALNT6	Q8NCL4	622 aa		4.91	□□□□□ -1.62
CHMP4A-208	ENST00000534106	TRIM34	Q9BYJ4	488 aa		4.91	□□□□□ -1.62
CHMP4A-208	ENST00000534106	NUCKS1	Q9H1E3	243 aa	Known RBP	4.91	□□□□□ -1.62
CHMP4A-208	ENST00000534106	CFDP1	Q9UEE9	299 aa	Predicted RBP	4.91	□□□□□ -1.62
CHMP4A-208	ENST00000534106	RERE	Q9P2R6	1566 aa		4.91	□□□□□ -1.62
CHMP4A-208	ENST00000534106	DNMT1	P26358	1616 aa	Known RBP	4.9	□□□□□ -1.62
CHMP4A-208	ENST00000534106	FAM135B	Q49AJ0	1406 aa		4.9	□□□□□ -1.62
CHMP4A-208	ENST00000534106	MIA2	Q96PC5	1412 aa		4.9	□□□□□ -1.62
CHMP4A-208	ENST00000534106	A2M	P01023	1474 aa		4.9	□□□□□ -1.62
CHMP4A-208	ENST00000534106	ERVK-9	P63128	1117 aa		4.9	□□□□□ -1.63
CHMP4A-208	ENST00000534106	NBPF10	Q6P3W6	841 aa	Known RBP	4.9	□□□□□ -1.63
CHMP4A-208	ENST00000534106	TAS1R3	Q7RTX0	852 aa		4.9	□□□□□ -1.63
CHMP4A-208	ENST00000534106	NBPF15	Q8N660	670 aa		4.9	□□□□□ -1.63
CHMP4A-208	ENST00000534106	SLC26A8	Q96RN1	970 aa		4.9	□□□□□ -1.63
CHMP4A-208	ENST00000534106	ARHGEF10L	Q9HCE6	1279 aa		4.9	□□□□□ -1.63
CHMP4A-208	ENST00000534106	SLAIN2	Q9P270	581 aa		4.9	□□□□□ -1.63
CHMP4A-208	ENST00000534106	TMEM94	Q12767	1356 aa		4.9	□□□□□ -1.63
CHMP4A-208	ENST00000534106	SETD1A	O15047	1707 aa	Known RBP	4.89	□□□□□ -1.63
CHMP4A-208	ENST00000534106	KIDINS220	Q9ULH0	1771 aa		4.89	□□□□□ -1.63
CHMP4A-208	ENST00000534106	ABCC1	P33527	1531 aa		4.89	□□□□□ -1.63
CHMP4A-208	ENST00000534106	WASL	O00401	505 aa	Predicted RBP	4.89	□□□□□ -1.63
CHMP4A-208	ENST00000534106	NR1H3	Q13133	447 aa		4.89	□□□□□ -1.63
CHMP4A-208	ENST00000534106	CLN3	Q13286	438 aa		4.89	□□□□□ -1.63
CHMP4A-208	ENST00000534106	PLA2G4E	Q3MJ16	856 aa		4.89	□□□□□ -1.63
CHMP4A-208	ENST00000534106	ACD	Q96AP0	544 aa		4.89	□□□□□ -1.63
CHMP4A-208	ENST00000534106	GRIP2	Q9C0E4	1043 aa		4.89	□□□□□ -1.63
CHMP4A-208	ENST00000534106	RRAGC	Q9HB90	399 aa		4.89	□□□□□ -1.63
CHMP4A-208	ENST00000534106	RAB6B	Q9NRW1	208 aa		4.89	□□□□□ -1.63
CHMP4A-208	ENST00000534106	MYO3A	Q8NEV4	1616 aa		4.89	□□□□□ -1.63
CHMP4A-208	ENST00000534106	CLTC	Q00610	1675 aa	Known RBP	4.89	□□□□□ -1.63
CHMP4A-208	ENST00000534106	CLIP1	P30622	1438 aa		4.89	□□□□□ -1.63
CHMP4A-208	ENST00000534106	SAMD9L	Q8IVG5	1584 aa		4.88	□□□□□ -1.63
CHMP4A-208	ENST00000534106	MYC	P01106	439 aa	Predicted RBP	4.88	□□□□□ -1.63
CHMP4A-208	ENST00000534106	F11	P03951	625 aa		4.88	□□□□□ -1.63
CHMP4A-208	ENST00000534106	PHKA2	P46019	1235 aa		4.88	□□□□□ -1.63
CHMP4A-208	ENST00000534106	MAP2K3	P46734	347 aa		4.88	□□□□□ -1.63
CHMP4A-208	ENST00000534106	SCTR	P47872	440 aa		4.88	□□□□□ -1.63
CHMP4A-208	ENST00000534106	NEUROD2	Q15784	382 aa		4.88	□□□□□ -1.63
CHMP4A-208	ENST00000534106	ZNF772	Q68DY9	489 aa	Predicted RBP	4.88	□□□□□ -1.63
CHMP4A-208	ENST00000534106	IL27	Q8NEV9	243 aa		4.88	□□□□□ -1.63
CHMP4A-208	ENST00000534106	BCAN	Q96GW7	911 aa		4.88	□□□□□ -1.63
CHMP4A-208	ENST00000534106	DCAF5	Q96JK2	942 aa		4.88	□□□□□ -1.63
CHMP4A-208	ENST00000534106	QTRT2	Q9H974	415 aa	Known RBP	4.88	□□□□□ -1.63
CHMP4A-208	ENST00000534106	GPAM	Q9HCL2	828 aa		4.88	□□□□□ -1.63
CHMP4A-208	ENST00000534106	PHF24	Q9UPV7	400 aa		4.88	□□□□□ -1.63
CHMP4A-208	ENST00000534106	SUPT6H	Q7KZ85	1726 aa	Known RBP	4.88	□□□□□ -1.63
CHMP4A-208	ENST00000534106	DHX29	Q7Z478	1369 aa	Known RBP	4.88	□□□□□ -1.63
CHMP4A-208	ENST00000534106	MED14	O60244	1454 aa		4.88	□□□□□ -1.63
CHMP4A-208	ENST00000534106	GPATCH8	Q9UKJ3	1502 aa	Known RBP	4.87	□□□□□ -1.63
CHMP4A-208	ENST00000534106	STRCP1	A6NGW2	1772 aa		4.87	□□□□□ -1.63
CHMP4A-208	ENST00000534106	SPATA31C2	B4DYI2	1134 aa		4.87	□□□□□ -1.63
CHMP4A-208	ENST00000534106	CSB-PGBD3	P0DP91	1061 aa		4.87	□□□□□ -1.63
CHMP4A-208	ENST00000534106	KCNA6	P17658	529 aa		4.87	□□□□□ -1.63
CHMP4A-208	ENST00000534106	WDR44	Q5JSH3	913 aa		4.87	□□□□□ -1.63
CHMP4A-208	ENST00000534106	TMEM214	Q6NUQ4	689 aa	Known RBP	4.87	□□□□□ -1.63
CHMP4A-208	ENST00000534106	PGBD3	Q8N328	593 aa		4.87	□□□□□ -1.63
CHMP4A-208	ENST00000534106	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	4.87	□□□□□ -1.63
CHMP4A-208	ENST00000534106	OXCT2	Q9BYC2	517 aa	Predicted RBP	4.87	□□□□□ -1.63
CHMP4A-208	ENST00000534106	OSBPL3	Q9H4L5	887 aa		4.87	□□□□□ -1.63
CHMP4A-208	ENST00000534106	GOPC	Q9HD26	462 aa		4.87	□□□□□ -1.63
CHMP4A-208	ENST00000534106	JCAD	Q9P266	1359 aa		4.87	□□□□□ -1.63
CHMP4A-208	ENST00000534106	ARHGAP35	Q9NRY4	1499 aa		4.87	□□□□□ -1.63
CHMP4A-208	ENST00000534106	LRP6	O75581	1613 aa		4.86	□□□□□ -1.63
CHMP4A-208	ENST00000534106	OIP5	O43482	229 aa		4.86	□□□□□ -1.63
CHMP4A-208	ENST00000534106	GNRH1	P01148	92 aa		4.86	□□□□□ -1.63
CHMP4A-208	ENST00000534106	AMPD1	P23109	780 aa		4.86	□□□□□ -1.63
CHMP4A-208	ENST00000534106	CENPC	Q03188	943 aa		4.86	□□□□□ -1.63
CHMP4A-208	ENST00000534106	GNAS	Q5JWF2	1037 aa		4.86	□□□□□ -1.63
CHMP4A-208	ENST00000534106	CNKSR1	Q969H4	720 aa		4.86	□□□□□ -1.63
CHMP4A-208	ENST00000534106	GJD4	Q96KN9	370 aa	Predicted RBP	4.86	□□□□□ -1.63
CHMP4A-208	ENST00000534106	SPOCK3	Q9BQ16	436 aa		4.86	□□□□□ -1.63
CHMP4A-208	ENST00000534106	CFHR5	Q9BXR6	569 aa		4.86	□□□□□ -1.63
CHMP4A-208	ENST00000534106	AFF2	P51816	1311 aa		4.86	□□□□□ -1.63
CHMP4A-208	ENST00000534106	FMN1	Q68DA7	1419 aa		4.86	□□□□□ -1.63
CHMP4A-208	ENST00000534106	SYCP2	Q9BX26	1530 aa		4.86	□□□□□ -1.63
CHMP4A-208	ENST00000534106	FAM135A	Q9P2D6	1515 aa		4.86	□□□□□ -1.63
CHMP4A-208	ENST00000534106	MYO5C	Q9NQX4	1742 aa		4.86	□□□□□ -1.63
CHMP4A-208	ENST00000534106	CDC42BPB	Q9Y5S2	1711 aa		4.86	□□□□□ -1.63
CHMP4A-208	ENST00000534106	APBB1	O00213	710 aa		4.85	□□□□□ -1.63
CHMP4A-208	ENST00000534106	DDX17	Q92841	729 aa	Known RBP	4.85	□□□□□ -1.63
CHMP4A-208	ENST00000534106	C8orf37	Q96NL8	207 aa		4.85	□□□□□ -1.63
CHMP4A-208	ENST00000534106	ESYT1	Q9BSJ8	1104 aa		4.85	□□□□□ -1.63
CHMP4A-208	ENST00000534106	MKL2	Q9ULH7	1088 aa		4.85	□□□□□ -1.63
CHMP4A-208	ENST00000534106	EID1	Q9Y6B2	187 aa		4.85	□□□□□ -1.63
CHMP4A-208	ENST00000534106	NDUFB9	Q9Y6M9	179 aa		4.85	□□□□□ -1.63
CHMP4A-208	ENST00000534106	KIAA1107	Q9UPP5	1409 aa		4.85	□□□□□ -1.63
CHMP4A-208	ENST00000534106	UGGT1	Q9NYU2	1555 aa		4.85	□□□□□ -1.63
CHMP4A-208	ENST00000534106	ZNF142	P52746	1687 aa	Predicted RBP	4.85	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms