RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 ERFEQ4G0M1 354 aa9.15□□□□□ -0.94
CD44-237ENST00000534082 HSP90AB2PQ58FF8 381 aa9.15□□□□□ -0.94
CD44-237ENST00000534082 TTLL6Q8N841 843 aa9.15□□□□□ -0.94
CD44-237ENST00000534082 WDR33Q9C0J8 1336 aaKnown RBP9.14□□□□□ -0.95
CD44-237ENST00000534082 MYH14Q7Z406 1995 aaKnown RBP9.14□□□□□ -0.95
CD44-237ENST00000534082 DDNO94850 711 aaPredicted RBP9.14□□□□□ -0.95
CD44-237ENST00000534082 ITGBL1O95965 494 aaPredicted RBP9.14□□□□□ -0.95
CD44-237ENST00000534082 MCOLN1Q9GZU1 580 aa9.14□□□□□ -0.95
CD44-237ENST00000534082 LTBP1Q14766 1721 aa9.14□□□□□ -0.95
CD44-237ENST00000534082 IQCA1LA6NCM1 817 aa9.13□□□□□ -0.95
CD44-237ENST00000534082 PHKG2P15735 406 aa9.13□□□□□ -0.95
CD44-237ENST00000534082 TM4SF1P30408 202 aa9.13□□□□□ -0.95
CD44-237ENST00000534082 PRPF38BQ5VTL8 546 aaKnown RBP9.13□□□□□ -0.95
CD44-237ENST00000534082 PDCD7Q8N8D1 485 aaKnown RBP9.13□□□□□ -0.95
CD44-237ENST00000534082 RNF25Q96BH1 459 aaPredicted RBP9.13□□□□□ -0.95
CD44-237ENST00000534082 BEGAINQ9BUH8 593 aa9.13□□□□□ -0.95
CD44-237ENST00000534082 TAF1DQ9H5J8 278 aaPredicted RBP9.13□□□□□ -0.95
CD44-237ENST00000534082 ABT1Q9ULW3 272 aaKnown RBP9.13□□□□□ -0.95
CD44-237ENST00000534082 DICER1Q9UPY3 1922 aaKnown RBP9.13□□□□□ -0.95
CD44-237ENST00000534082 KIF24Q5T7B8 1368 aa9.12□□□□□ -0.95
CD44-237ENST00000534082 NRXN2Q9P2S2 1712 aa9.12□□□□□ -0.95
CD44-237ENST00000534082 ECM2O94769 699 aaPredicted RBP9.12□□□□□ -0.95
CD44-237ENST00000534082 CRKLP46109 303 aaKnown RBP9.12□□□□□ -0.95
CD44-237ENST00000534082 EAPPQ56P03 285 aaPredicted RBP9.12□□□□□ -0.95
CD44-237ENST00000534082 C2CD5Q86YS7 1000 aa9.12□□□□□ -0.95
CD44-237ENST00000534082 IFNL2Q8IZJ0 200 aa9.12□□□□□ -0.95
CD44-237ENST00000534082 L3MBTL2Q969R5 705 aa9.12□□□□□ -0.95
CD44-237ENST00000534082 TSKSQ9UJT2 592 aa9.12□□□□□ -0.95
CD44-237ENST00000534082 ADAMTS7Q9UKP4 1686 aa9.12□□□□□ -0.95
CD44-237ENST00000534082 AFDNP55196 1824 aaKnown RBP9.12□□□□□ -0.95
CD44-237ENST00000534082 ADAMTSL1Q8N6G6 1762 aa9.12□□□□□ -0.95
CD44-237ENST00000534082 CARMIL3Q8ND23 1372 aa9.12□□□□□ -0.95
CD44-237ENST00000534082 L3MBTL3Q96JM7 780 aaPredicted RBP9.11□□□□□ -0.95
CD44-237ENST00000534082 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.11□□□□□ -0.95
CD44-237ENST00000534082 TJP1Q07157 1748 aa9.11□□□□□ -0.95
CD44-237ENST00000534082 FER1L6Q2WGJ9 1857 aa9.11□□□□□ -0.95
CD44-237ENST00000534082 SCN4AP35499 1836 aa9.1□□□□□ -0.95
CD44-237ENST00000534082 LTBP3Q9NS15 1303 aa9.1□□□□□ -0.95
CD44-237ENST00000534082 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.1□□□□□ -0.95
CD44-237ENST00000534082 H0YIN7 160 aa9.1□□□□□ -0.95
CD44-237ENST00000534082 C21orf2O43822 256 aa9.1□□□□□ -0.95
CD44-237ENST00000534082 USPL1Q5W0Q7 1092 aa9.1□□□□□ -0.95
CD44-237ENST00000534082 C3orf67Q6ZVT6 689 aa9.1□□□□□ -0.95
CD44-237ENST00000534082 PAXIP1Q6ZW49 1069 aaPredicted RBP9.1□□□□□ -0.95
CD44-237ENST00000534082 EFCAB3Q8N7B9 438 aa9.1□□□□□ -0.95
CD44-237ENST00000534082 ZFP91Q96JP5 570 aaPredicted RBP9.1□□□□□ -0.95
CD44-237ENST00000534082 CAPNS2Q96L46 248 aa9.1□□□□□ -0.95
CD44-237ENST00000534082 TAOK3Q9H2K8 898 aa9.1□□□□□ -0.95
CD44-237ENST00000534082 GGNBP2Q9H3C7 697 aa9.1□□□□□ -0.95
CD44-237ENST00000534082 TONSLQ96HA7 1378 aa9.1□□□□□ -0.95
CD44-237ENST00000534082 COL11A2P13942 1736 aaPredicted RBP9.09□□□□□ -0.95
CD44-237ENST00000534082 POTEMA6NI47 508 aa9.09□□□□□ -0.95
CD44-237ENST00000534082 ZPR1O75312 459 aa9.09□□□□□ -0.95
CD44-237ENST00000534082 ECE1P42892 770 aa9.09□□□□□ -0.95
CD44-237ENST00000534082 GRM1Q13255 1194 aa9.09□□□□□ -0.95
CD44-237ENST00000534082 DGKZQ13574 1117 aa9.09□□□□□ -0.95
CD44-237ENST00000534082 NFIXQ14938 502 aa9.09□□□□□ -0.95
CD44-237ENST00000534082 PUS7Q96PZ0 661 aaKnown RBP9.09□□□□□ -0.95
CD44-237ENST00000534082 ERVV-2B6SEH9 535 aa9.08□□□□□ -0.96
CD44-237ENST00000534082 G3V3G9 751 aa9.08□□□□□ -0.96
CD44-237ENST00000534082 FYB1O15117 783 aa9.08□□□□□ -0.96
CD44-237ENST00000534082 PTCD1O75127 700 aaKnown RBP9.08□□□□□ -0.96
CD44-237ENST00000534082 SERPINB2P05120 415 aa9.08□□□□□ -0.96
CD44-237ENST00000534082 SOX10P56693 466 aa9.08□□□□□ -0.96
CD44-237ENST00000534082 MAP1SQ66K74 1059 aaPredicted RBP9.08□□□□□ -0.96
CD44-237ENST00000534082 CYP4F22Q6NT55 531 aa9.08□□□□□ -0.96
CD44-237ENST00000534082 POTEGQ6S5H5 508 aa9.08□□□□□ -0.96
CD44-237ENST00000534082 CNTROBQ8N137 903 aa9.08□□□□□ -0.96
CD44-237ENST00000534082 GPR101Q96P66 508 aaPredicted RBP9.08□□□□□ -0.96
CD44-237ENST00000534082 HACL1Q9UJ83 578 aa9.08□□□□□ -0.96
CD44-237ENST00000534082 EPHX2P34913 555 aa9.07□□□□□ -0.96
CD44-237ENST00000534082 INTS5Q6P9B9 1019 aaKnown RBP9.07□□□□□ -0.96
CD44-237ENST00000534082 ZNF622Q969S3 477 aaKnown RBP eCLIP9.07□□□□□ -0.96
CD44-237ENST00000534082 EMILIN1Q9Y6C2 1016 aa9.07□□□□□ -0.96
CD44-237ENST00000534082 ANKRD26Q9UPS8 1709 aa9.07□□□□□ -0.96
CD44-237ENST00000534082 SOS1Q07889 1333 aaPredicted RBP9.06□□□□□ -0.96
CD44-237ENST00000534082 ZNF541Q9H0D2 1346 aa9.06□□□□□ -0.96
CD44-237ENST00000534082 KIF20BQ96Q89 1820 aa9.06□□□□□ -0.96
CD44-237ENST00000534082 CA12O43570 354 aa9.06□□□□□ -0.96
CD44-237ENST00000534082 PNMA8AQ86V59 439 aaPredicted RBP9.06□□□□□ -0.96
CD44-237ENST00000534082 EYA1Q99502 592 aa9.06□□□□□ -0.96
CD44-237ENST00000534082 CARD11Q9BXL7 1154 aa9.06□□□□□ -0.96
CD44-237ENST00000534082 DDX21Q9NR30 783 aaKnown RBP eCLIP9.06□□□□□ -0.96
CD44-237ENST00000534082 COL15A1P39059 1388 aa9.06□□□□□ -0.96
CD44-237ENST00000534082 ANKRD31Q8N7Z5 1873 aa9.06□□□□□ -0.96
CD44-237ENST00000534082 RNF123Q5XPI4 1314 aa9.05□□□□□ -0.96
CD44-237ENST00000534082 AOC2O75106 756 aa9.05□□□□□ -0.96
CD44-237ENST00000534082 HSP90AB1P08238 724 aaKnown RBP9.05□□□□□ -0.96
CD44-237ENST00000534082 CABP4P57796 275 aa9.05□□□□□ -0.96
CD44-237ENST00000534082 BCL2L12Q9HB09 334 aa9.05□□□□□ -0.96
CD44-237ENST00000534082 NARFQ9UHQ1 456 aa9.05□□□□□ -0.96
CD44-237ENST00000534082 PPM1GO15355 546 aaPredicted RBP9.04□□□□□ -0.96
CD44-237ENST00000534082 MAP2K2P36507 400 aa9.04□□□□□ -0.96
CD44-237ENST00000534082 TAOK2Q9UL54 1235 aa9.04□□□□□ -0.96
CD44-237ENST00000534082 PDZRN3Q9UPQ7 1066 aa9.04□□□□□ -0.96
CD44-237ENST00000534082 CASP8AP2Q9UKL3 1982 aa9.04□□□□□ -0.96
CD44-237ENST00000534082 PDE6BP35913 854 aa9.03□□□□□ -0.96
CD44-237ENST00000534082 FMR1Q06787 632 aaKnown RBP eCLIP9.03□□□□□ -0.96
CD44-237ENST00000534082 SOGA3Q5TF21 947 aa9.03□□□□□ -0.96
CD44-237ENST00000534082 PRPF40BQ6NWY9 871 aaKnown RBP9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms