RNA–Protein interactions for RNA: ENST00000533018.1

PCF11-206, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 3

Gene PCF11, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-206ENST00000533018 NBPF10Q6P3W6 841 aaKnown RBP23.54■■□□□ 1.36
PCF11-206ENST00000533018 NGEFQ8N5V2 710 aa23.54■■□□□ 1.36
PCF11-206ENST00000533018 NBPF15Q8N660 670 aa23.54■■□□□ 1.36
PCF11-206ENST00000533018 THUMPD2Q9BTF0 503 aaKnown RBP23.54■■□□□ 1.36
PCF11-206ENST00000533018 COL11A2P13942 1736 aaPredicted RBP23.53■■□□□ 1.36
PCF11-206ENST00000533018 FAM177BA6PVY3 158 aa23.52■■□□□ 1.36
PCF11-206ENST00000533018 RBM46Q8TBY0 533 aaKnown RBP23.52■■□□□ 1.36
PCF11-206ENST00000533018 NIP7Q9Y221 180 aaKnown RBP eCLIP23.52■■□□□ 1.36
PCF11-206ENST00000533018 NFKBIEO00221 500 aa23.51■■□□□ 1.35
PCF11-206ENST00000533018 APLP1P51693 650 aa23.51■■□□□ 1.35
PCF11-206ENST00000533018 PRELPP51888 382 aa23.51■■□□□ 1.35
PCF11-206ENST00000533018 RALBP1Q15311 655 aa23.51■■□□□ 1.35
PCF11-206ENST00000533018 CNKSR1Q969H4 720 aa23.51■■□□□ 1.35
PCF11-206ENST00000533018 ZC3H4Q9UPT8 1303 aaKnown RBP23.51■■□□□ 1.35
PCF11-206ENST00000533018 TNRC6CQ9HCJ0 1690 aaKnown RBP23.51■■□□□ 1.35
PCF11-206ENST00000533018 LAMB4A4D0S4 1761 aa23.5■■□□□ 1.35
PCF11-206ENST00000533018 DDX10Q13206 875 aaKnown RBP23.5■■□□□ 1.35
PCF11-206ENST00000533018 TPTE2Q6XPS3 522 aa23.5■■□□□ 1.35
PCF11-206ENST00000533018 MASTLQ96GX5 879 aa23.5■■□□□ 1.35
PCF11-206ENST00000533018 KDM3BQ7LBC6 1761 aa23.5■■□□□ 1.35
PCF11-206ENST00000533018 SRGNP10124 158 aa23.49■■□□□ 1.35
PCF11-206ENST00000533018 STYK1Q6J9G0 422 aa23.49■■□□□ 1.35
PCF11-206ENST00000533018 RRP7AQ9Y3A4 280 aaKnown RBP23.49■■□□□ 1.35
PCF11-206ENST00000533018 TIAM2Q8IVF5 1701 aa23.48■■□□□ 1.35
PCF11-206ENST00000533018 SLX4Q8IY92 1834 aa23.48■■□□□ 1.35
PCF11-206ENST00000533018 GLTPD2A6NH11 291 aa23.48■■□□□ 1.35
PCF11-206ENST00000533018 GTF2E1P29083 439 aaPredicted RBP23.48■■□□□ 1.35
PCF11-206ENST00000533018 EIF4A1P60842 406 aaKnown RBP23.48■■□□□ 1.35
PCF11-206ENST00000533018 PRPF40BQ6NWY9 871 aaKnown RBP23.48■■□□□ 1.35
PCF11-206ENST00000533018 MYL6BP14649 208 aa23.47■■□□□ 1.35
PCF11-206ENST00000533018 RIPK4P57078 832 aa23.47■■□□□ 1.35
PCF11-206ENST00000533018 HLFQ16534 295 aa23.47■■□□□ 1.35
PCF11-206ENST00000533018 FER1L6Q2WGJ9 1857 aa23.47■■□□□ 1.35
PCF11-206ENST00000533018 ERFEQ4G0M1 354 aa23.46■■□□□ 1.35
PCF11-206ENST00000533018 FSTL1Q12841 308 aa23.45■■□□□ 1.34
PCF11-206ENST00000533018 DPY19L2Q6NUT2 758 aa23.45■■□□□ 1.34
PCF11-206ENST00000533018 KIF6Q6ZMV9 814 aa23.45■■□□□ 1.34
PCF11-206ENST00000533018 TAOK3Q9H2K8 898 aa23.45■■□□□ 1.34
PCF11-206ENST00000533018 TSPYL4Q9UJ04 414 aa23.45■■□□□ 1.34
PCF11-206ENST00000533018 RGL2O15211 777 aa23.44■■□□□ 1.34
PCF11-206ENST00000533018 VEGFAP15692 232 aaPredicted RBP23.44■■□□□ 1.34
PCF11-206ENST00000533018 SOGA3Q5TF21 947 aa23.44■■□□□ 1.34
PCF11-206ENST00000533018 DICER1Q9UPY3 1922 aaKnown RBP23.43■■□□□ 1.34
PCF11-206ENST00000533018 NPR1P16066 1061 aa23.43■■□□□ 1.34
PCF11-206ENST00000533018 NUP98P52948 1817 aa23.43■■□□□ 1.34
PCF11-206ENST00000533018 ARFGEF2Q9Y6D5 1785 aa23.42■■□□□ 1.34
PCF11-206ENST00000533018 MAP3K15Q6ZN16 1313 aa23.41■■□□□ 1.34
PCF11-206ENST00000533018 SMC1BQ8NDV3 1235 aa23.41■■□□□ 1.34
PCF11-206ENST00000533018 ZBTB3Q9H5J0 574 aa23.41■■□□□ 1.34
PCF11-206ENST00000533018 MYBBP1AQ9BQG0 1328 aaKnown RBP23.4■■□□□ 1.34
PCF11-206ENST00000533018 ERVV-1B6SEH8 477 aa23.4■■□□□ 1.34
PCF11-206ENST00000533018 EIF2S2P20042 333 aaKnown RBP23.4■■□□□ 1.34
PCF11-206ENST00000533018 LMOD3Q0VAK6 560 aa23.4■■□□□ 1.34
PCF11-206ENST00000533018 NEUROD2Q15784 382 aa23.4■■□□□ 1.34
PCF11-206ENST00000533018 TTLL7Q6ZT98 887 aa23.4■■□□□ 1.34
PCF11-206ENST00000533018 CCDC146Q8IYE0 955 aa23.4■■□□□ 1.34
PCF11-206ENST00000533018 NYXQ9GZU5 481 aa23.4■■□□□ 1.34
PCF11-206ENST00000533018 LTBP3Q9NS15 1303 aa23.39■■□□□ 1.34
PCF11-206ENST00000533018 TMPOP42166 694 aaKnown RBP23.39■■□□□ 1.33
PCF11-206ENST00000533018 HTRA3P83110 453 aa23.39■■□□□ 1.33
PCF11-206ENST00000533018 CCDC93Q567U6 631 aa23.39■■□□□ 1.33
PCF11-206ENST00000533018 WDR90Q96KV7 1748 aa23.39■■□□□ 1.33
PCF11-206ENST00000533018 GPTP24298 496 aa23.38■■□□□ 1.33
PCF11-206ENST00000533018 WDR43Q15061 677 aaKnown RBP eCLIP23.38■■□□□ 1.332e-6■□□□□ 10.4
PCF11-206ENST00000533018 NUTM1Q86Y26 1132 aa23.38■■□□□ 1.33
PCF11-206ENST00000533018 KLRG2A4D1S0 409 aaPredicted RBP23.37■■□□□ 1.33
PCF11-206ENST00000533018 ALDH1B1P30837 517 aa23.37■■□□□ 1.33
PCF11-206ENST00000533018 C7orf43Q8WVR3 580 aa23.36■■□□□ 1.33
PCF11-206ENST00000533018 DNAJC5GQ8N7S2 189 aa23.35■■□□□ 1.33
PCF11-206ENST00000533018 LAS1LQ9Y4W2 734 aaKnown RBP23.35■■□□□ 1.33
PCF11-206ENST00000533018 ERBB4Q15303 1308 aa23.34■■□□□ 1.33
PCF11-206ENST00000533018 DDNO94850 711 aaPredicted RBP23.34■■□□□ 1.33
PCF11-206ENST00000533018 OLFM4Q6UX06 510 aa23.34■■□□□ 1.33
PCF11-206ENST00000533018 BABAM1Q9NWV8 329 aa23.34■■□□□ 1.33
PCF11-206ENST00000533018 ABCC12Q96J65 1359 aa23.33■■□□□ 1.33
PCF11-206ENST00000533018 POTECB2RU33 542 aa23.33■■□□□ 1.33
PCF11-206ENST00000533018 FKBP4Q02790 459 aaKnown RBP eCLIP23.33■■□□□ 1.33
PCF11-206ENST00000533018 RTKN2Q8IZC4 609 aa23.33■■□□□ 1.33
PCF11-206ENST00000533018 NECTIN2Q92692 538 aa23.33■■□□□ 1.33
PCF11-206ENST00000533018 ZNF277Q9NRM2 450 aaPredicted RBP23.33■■□□□ 1.33
PCF11-206ENST00000533018 SUSD4Q5VX71 490 aa23.32■■□□□ 1.32
PCF11-206ENST00000533018 GIGYF2Q6Y7W6 1299 aaKnown RBP23.32■■□□□ 1.32
PCF11-206ENST00000533018 RPGRQ92834 1020 aaKnown RBP23.32■■□□□ 1.32
PCF11-206ENST00000533018 RUNDC1Q96C34 613 aa23.32■■□□□ 1.32
PCF11-206ENST00000533018 UBN2Q6ZU65 1347 aa23.32■■□□□ 1.32
PCF11-206ENST00000533018 ANXA1P04083 346 aa23.31■■□□□ 1.32
PCF11-206ENST00000533018 PCNTO95613 3336 aa23.3■■□□□ 1.32
PCF11-206ENST00000533018 PPP1R42Q7Z4L9 355 aa23.3■■□□□ 1.32
PCF11-206ENST00000533018 ZNF34Q8IZ26 560 aa23.3■■□□□ 1.32
PCF11-206ENST00000533018 AIMP1Q12904 312 aaKnown RBP23.29■■□□□ 1.32
PCF11-206ENST00000533018 PDIA6Q15084 440 aa23.29■■□□□ 1.32
PCF11-206ENST00000533018 PROSER3Q2NL68 480 aa23.29■■□□□ 1.32
PCF11-206ENST00000533018 CRY2Q49AN0 593 aa23.29■■□□□ 1.32
PCF11-206ENST00000533018 ADAMTS8Q9UP79 889 aa23.29■■□□□ 1.32
PCF11-206ENST00000533018 SYNE4Q8N205 404 aa23.28■■□□□ 1.32
PCF11-206ENST00000533018 KLRG1Q96E93 195 aa23.28■■□□□ 1.32
PCF11-206ENST00000533018 TCERG1O14776 1098 aaKnown RBP23.27■■□□□ 1.32
PCF11-206ENST00000533018 PARP10Q53GL7 1025 aa23.27■■□□□ 1.32
PCF11-206ENST00000533018 RBM17Q96I25 401 aaKnown RBP23.27■■□□□ 1.32
PCF11-206ENST00000533018 IBTKQ9P2D0 1353 aaPredicted RBP23.27■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms