RNA–Protein interactions for RNA: ENST00000532542.1

TRIM3-211, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 4,419 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-211ENST00000532542 RBM25P49756 843 aaKnown RBP13.38□□□□□ -0.27
TRIM3-211ENST00000532542 AEBP2Q6ZN18 517 aaPredicted RBP13.38□□□□□ -0.27
TRIM3-211ENST00000532542 NRKQ7Z2Y5 1582 aa13.38□□□□□ -0.27
TRIM3-211ENST00000532542 NGLY1Q96IV0 654 aa13.38□□□□□ -0.27
TRIM3-211ENST00000532542 FOXD4L5Q5VV16 416 aaPredicted RBP13.38□□□□□ -0.27
TRIM3-211ENST00000532542 IL27Q8NEV9 243 aa13.38□□□□□ -0.27
TRIM3-211ENST00000532542 FOXD4L4Q8WXT5 416 aaPredicted RBP13.38□□□□□ -0.27
TRIM3-211ENST00000532542 SNX21Q969T3 373 aa13.38□□□□□ -0.27
TRIM3-211ENST00000532542 BOLA2Q9H3K6 86 aa13.38□□□□□ -0.27
TRIM3-211ENST00000532542 SMC3Q9UQE7 1217 aa13.38□□□□□ -0.27
TRIM3-211ENST00000532542 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.38□□□□□ -0.27
TRIM3-211ENST00000532542 AOX1Q06278 1338 aa13.38□□□□□ -0.27
TRIM3-211ENST00000532542 ERBB4Q15303 1308 aa13.37□□□□□ -0.27
TRIM3-211ENST00000532542 DDB1Q16531 1140 aa13.37□□□□□ -0.27
TRIM3-211ENST00000532542 AKAP2Q9Y2D5 859 aa13.37□□□□□ -0.27
TRIM3-211ENST00000532542 TTC39AQ5SRH9 613 aa13.37□□□□□ -0.27
TRIM3-211ENST00000532542 ESYT1Q9BSJ8 1104 aa13.37□□□□□ -0.27
TRIM3-211ENST00000532542 FAM177BA6PVY3 158 aa13.37□□□□□ -0.27
TRIM3-211ENST00000532542 WASHC4Q2M389 1173 aa13.37□□□□□ -0.27
TRIM3-211ENST00000532542 BICC1Q9H694 974 aaKnown RBP13.37□□□□□ -0.27
TRIM3-211ENST00000532542 IFIT5Q13325 482 aaKnown RBP13.36□□□□□ -0.27
TRIM3-211ENST00000532542 PA2G4Q9UQ80 394 aaKnown RBP13.36□□□□□ -0.27
TRIM3-211ENST00000532542 CYP46A1Q9Y6A2 500 aa13.36□□□□□ -0.27
TRIM3-211ENST00000532542 USP16Q9Y5T5 823 aa13.36□□□□□ -0.27
TRIM3-211ENST00000532542 GCKRQ14397 625 aa13.36□□□□□ -0.27
TRIM3-211ENST00000532542 LMBR1LQ6UX01 489 aa13.36□□□□□ -0.27
TRIM3-211ENST00000532542 JARID2Q92833 1246 aaPredicted RBP13.36□□□□□ -0.27
TRIM3-211ENST00000532542 ZNF652Q9Y2D9 606 aa13.35□□□□□ -0.27
TRIM3-211ENST00000532542 UBAP1LF5GYI3 381 aa13.35□□□□□ -0.27
TRIM3-211ENST00000532542 TRMT112Q9UI30 125 aaKnown RBP13.35□□□□□ -0.27
TRIM3-211ENST00000532542 MPHOSPH8Q99549 860 aa13.34□□□□□ -0.27
TRIM3-211ENST00000532542 TBC1D2BQ9UPU7 963 aa13.34□□□□□ -0.27
TRIM3-211ENST00000532542 IBTKQ9P2D0 1353 aaPredicted RBP13.34□□□□□ -0.27
TRIM3-211ENST00000532542 MCM4P33991 863 aa13.34□□□□□ -0.27
TRIM3-211ENST00000532542 ANAPC15P60006 121 aa13.34□□□□□ -0.27
TRIM3-211ENST00000532542 PROSER3Q2NL68 480 aa13.34□□□□□ -0.27
TRIM3-211ENST00000532542 CCDC85AQ96PX6 553 aaPredicted RBP13.34□□□□□ -0.27
TRIM3-211ENST00000532542 CEMIPQ8WUJ3 1361 aa13.34□□□□□ -0.27
TRIM3-211ENST00000532542 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.33□□□□□ -0.27
TRIM3-211ENST00000532542 AKAP12Q02952 1782 aa13.33□□□□□ -0.28
TRIM3-211ENST00000532542 NEURL1BA8MQ27 555 aa13.33□□□□□ -0.28
TRIM3-211ENST00000532542 CYP27B1O15528 508 aa13.33□□□□□ -0.28
TRIM3-211ENST00000532542 ANKRD1Q15327 319 aa13.33□□□□□ -0.28
TRIM3-211ENST00000532542 ZRSR1Q15695 479 aaKnown RBP13.33□□□□□ -0.28
TRIM3-211ENST00000532542 VPS37DQ86XT2 251 aa13.33□□□□□ -0.28
TRIM3-211ENST00000532542 FAM184AQ8NB25 1140 aa13.33□□□□□ -0.28
TRIM3-211ENST00000532542 SUCLG2Q96I99 432 aa13.33□□□□□ -0.28
TRIM3-211ENST00000532542 USP26Q9BXU7 913 aa13.33□□□□□ -0.28
TRIM3-211ENST00000532542 APPP05067 770 aa13.33□□□□□ -0.28
TRIM3-211ENST00000532542 GSPT1P15170 499 aaKnown RBP13.33□□□□□ -0.28
TRIM3-211ENST00000532542 GPTP24298 496 aa13.33□□□□□ -0.28
TRIM3-211ENST00000532542 TRDNQ13061 729 aa13.33□□□□□ -0.28
TRIM3-211ENST00000532542 METTL24Q5JXM2 366 aa13.33□□□□□ -0.28
TRIM3-211ENST00000532542 MST1RQ04912 1400 aa13.33□□□□□ -0.28
TRIM3-211ENST00000532542 KAT6BQ8WYB5 2073 aa13.33□□□□□ -0.28
TRIM3-211ENST00000532542 TRAK2O60296 914 aa13.33□□□□□ -0.28
TRIM3-211ENST00000532542 CHMLP26374 656 aa13.33□□□□□ -0.28
TRIM3-211ENST00000532542 KRT32Q14532 448 aa13.33□□□□□ -0.28
TRIM3-211ENST00000532542 IL15P40933 162 aaPredicted RBP13.32□□□□□ -0.28
TRIM3-211ENST00000532542 CCDC191Q8NCU4 936 aa13.32□□□□□ -0.28
TRIM3-211ENST00000532542 A1BGP04217 495 aa13.32□□□□□ -0.28
TRIM3-211ENST00000532542 FKBP4Q02790 459 aaKnown RBP eCLIP13.32□□□□□ -0.28
TRIM3-211ENST00000532542 MCTP1Q6DN14 999 aa13.32□□□□□ -0.28
TRIM3-211ENST00000532542 SMARCC1Q92922 1105 aaPredicted RBP13.32□□□□□ -0.28
TRIM3-211ENST00000532542 JAKMIP1Q96N16 626 aaKnown RBP13.32□□□□□ -0.28
TRIM3-211ENST00000532542 UPF3BQ9BZI7 483 aaKnown RBP13.32□□□□□ -0.28
TRIM3-211ENST00000532542 SETD1AO15047 1707 aaKnown RBP13.32□□□□□ -0.28
TRIM3-211ENST00000532542 ANKRD18BA2A2Z9 1011 aa13.32□□□□□ -0.28
TRIM3-211ENST00000532542 OSBPL3Q9H4L5 887 aa13.32□□□□□ -0.28
TRIM3-211ENST00000532542 IFIT1P09914 478 aaKnown RBP13.31□□□□□ -0.28
TRIM3-211ENST00000532542 ZSCAN25Q6NSZ9 544 aa13.31□□□□□ -0.28
TRIM3-211ENST00000532542 BLOC1S2Q6QNY1 142 aa13.31□□□□□ -0.28
TRIM3-211ENST00000532542 H3BQV1 296 aa13.31□□□□□ -0.28
TRIM3-211ENST00000532542 IFFO2Q5TF58 517 aa13.31□□□□□ -0.28
TRIM3-211ENST00000532542 ZSCAN31Q96LW9 406 aaPredicted RBP13.31□□□□□ -0.28
TRIM3-211ENST00000532542 PRAMEF22A3QJZ6 481 aa13.31□□□□□ -0.28
TRIM3-211ENST00000532542 PHF14O94880 888 aa13.31□□□□□ -0.28
TRIM3-211ENST00000532542 TMX4Q9H1E5 349 aaPredicted RBP13.31□□□□□ -0.28
TRIM3-211ENST00000532542 XRN1Q8IZH2 1706 aaKnown RBP13.31□□□□□ -0.28
TRIM3-211ENST00000532542 RALYLQ86SE5 291 aaKnown RBP13.31□□□□□ -0.28
TRIM3-211ENST00000532542 TOMM22Q9NS69 142 aa13.31□□□□□ -0.28
TRIM3-211ENST00000532542 PDRG1Q9NUG6 133 aa13.31□□□□□ -0.28
TRIM3-211ENST00000532542 PRPF40BQ6NWY9 871 aaKnown RBP13.3□□□□□ -0.28
TRIM3-211ENST00000532542 CASTP20810 708 aaKnown RBP13.3□□□□□ -0.28
TRIM3-211ENST00000532542 GNL2Q13823 731 aaKnown RBP13.3□□□□□ -0.28
TRIM3-211ENST00000532542 TAOK2Q9UL54 1235 aa13.3□□□□□ -0.28
TRIM3-211ENST00000532542 FMN2Q9NZ56 1722 aa13.3□□□□□ -0.28
TRIM3-211ENST00000532542 PDCP20941 246 aa13.29□□□□□ -0.28
TRIM3-211ENST00000532542 IGHMBP2P38935 993 aaKnown RBP13.29□□□□□ -0.28
TRIM3-211ENST00000532542 FOXD4L6Q3SYB3 417 aaPredicted RBP13.29□□□□□ -0.28
TRIM3-211ENST00000532542 FOXD4L3Q6VB84 417 aaPredicted RBP13.29□□□□□ -0.28
TRIM3-211ENST00000532542 CPLX2Q6PUV4 134 aaKnown RBP13.29□□□□□ -0.28
TRIM3-211ENST00000532542 LDHAL6AQ6ZMR3 332 aa13.29□□□□□ -0.28
TRIM3-211ENST00000532542 VPS37CA5D8V6 355 aaPredicted RBP13.29□□□□□ -0.28
TRIM3-211ENST00000532542 ATP6V1AP38606 617 aa13.29□□□□□ -0.28
TRIM3-211ENST00000532542 STAP2Q9UGK3 403 aa13.29□□□□□ -0.28
TRIM3-211ENST00000532542 PTMAP06454 111 aaKnown RBP13.29□□□□□ -0.28
TRIM3-211ENST00000532542 DNAJC10Q8IXB1 793 aa13.29□□□□□ -0.28
TRIM3-211ENST00000532542 ACSBG1Q96GR2 724 aa13.28□□□□□ -0.28
TRIM3-211ENST00000532542 CTNNA3Q9UI47 895 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms