RNA–Protein interactions for RNA: ENST00000531474.2

NXF1-209, Transcript of nuclear RNA export factor 1, human

TSL 3

Gene NXF1, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-209	ENST00000531474	PIAS4	Q8N2W9	510 aa	Predicted RBP	12	□□□□□ -0.49
NXF1-209	ENST00000531474	SRP68	Q9UHB9	627 aa	Known RBP	12	□□□□□ -0.49
NXF1-209	ENST00000531474	QSER1	Q2KHR3	1735 aa		12	□□□□□ -0.49
NXF1-209	ENST00000531474	IPO8	O15397	1037 aa	Known RBP	11.99	□□□□□ -0.49
NXF1-209	ENST00000531474	ZPR1	O75312	459 aa		11.99	□□□□□ -0.49
NXF1-209	ENST00000531474	ALDH1L2	Q3SY69	923 aa		11.99	□□□□□ -0.49
NXF1-209	ENST00000531474	KIF6	Q6ZMV9	814 aa		11.99	□□□□□ -0.49
NXF1-209	ENST00000531474	CENPQ	Q7L2Z9	268 aa	Predicted RBP	11.99	□□□□□ -0.49
NXF1-209	ENST00000531474	DZIP3	Q86Y13	1208 aa	Known RBP	11.99	□□□□□ -0.49
NXF1-209	ENST00000531474	XAGE3	Q8WTP9	111 aa		11.99	□□□□□ -0.49
NXF1-209	ENST00000531474	HYPK	Q9NX55	129 aa		11.99	□□□□□ -0.49
NXF1-209	ENST00000531474	TBC1D2B	Q9UPU7	963 aa		11.99	□□□□□ -0.49
NXF1-209	ENST00000531474	USP42	Q9H9J4	1324 aa	Known RBP	11.98	□□□□□ -0.49
NXF1-209	ENST00000531474	ZBTB7A	O95365	584 aa		11.98	□□□□□ -0.49
NXF1-209	ENST00000531474	SLC4A2	P04920	1241 aa		11.98	□□□□□ -0.49
NXF1-209	ENST00000531474	AIMP1	Q12904	312 aa	Known RBP	11.98	□□□□□ -0.49
NXF1-209	ENST00000531474	USPL1	Q5W0Q7	1092 aa		11.98	□□□□□ -0.49
NXF1-209	ENST00000531474	MSL1	Q68DK7	614 aa		11.98	□□□□□ -0.49
NXF1-209	ENST00000531474	TTLL7	Q6ZT98	887 aa		11.98	□□□□□ -0.49
NXF1-209	ENST00000531474	LRP10	Q7Z4F1	713 aa		11.98	□□□□□ -0.49
NXF1-209	ENST00000531474	NARF	Q9UHQ1	456 aa		11.98	□□□□□ -0.49
NXF1-209	ENST00000531474	RBM19	Q9Y4C8	960 aa	Known RBP	11.98	□□□□□ -0.49
NXF1-209	ENST00000531474	CASZ1	Q86V15	1759 aa		11.97	□□□□□ -0.49
NXF1-209	ENST00000531474	C4A	P0C0L4	1744 aa		11.97	□□□□□ -0.49
NXF1-209	ENST00000531474	BRPF1	P55201	1214 aa	Predicted RBP	11.97	□□□□□ -0.49
NXF1-209	ENST00000531474	COPS6	Q7L5N1	327 aa		11.97	□□□□□ -0.49
NXF1-209	ENST00000531474	BCL2L13	Q9BXK5	485 aa		11.97	□□□□□ -0.49
NXF1-209	ENST00000531474	CHMP4B	Q9H444	224 aa	Known RBP	11.97	□□□□□ -0.49
NXF1-209	ENST00000531474	CAMTA2	O94983	1202 aa		11.96	□□□□□ -0.49
NXF1-209	ENST00000531474	C20orf194	Q5TEA3	1177 aa		11.96	□□□□□ -0.49
NXF1-209	ENST00000531474	ZKSCAN2	Q63HK3	967 aa		11.96	□□□□□ -0.49
NXF1-209	ENST00000531474	G2E3	Q7L622	706 aa		11.96	□□□□□ -0.49
NXF1-209	ENST00000531474	SLC16A10	Q8TF71	515 aa		11.96	□□□□□ -0.49
NXF1-209	ENST00000531474	SSH1	Q8WYL5	1049 aa		11.96	□□□□□ -0.49
NXF1-209	ENST00000531474	MTFR1L	Q9H019	292 aa		11.96	□□□□□ -0.49
NXF1-209	ENST00000531474	ZBTB3	Q9H5J0	574 aa		11.96	□□□□□ -0.49
NXF1-209	ENST00000531474	PHAX	Q9H814	394 aa	Known RBP	11.96	□□□□□ -0.49
NXF1-209	ENST00000531474	RTN4	Q9NQC3	1192 aa	Known RBP	11.96	□□□□□ -0.49
NXF1-209	ENST00000531474	SMC4	Q9NTJ3	1288 aa		11.96	□□□□□ -0.49
NXF1-209	ENST00000531474	MAP3K15	Q6ZN16	1313 aa		11.95	□□□□□ -0.5
NXF1-209	ENST00000531474	KIF16B	Q96L93	1317 aa		11.95	□□□□□ -0.5
NXF1-209	ENST00000531474	SCN7A	Q01118	1682 aa		11.95	□□□□□ -0.5
NXF1-209	ENST00000531474	ZBTB22	O15209	634 aa		11.95	□□□□□ -0.5
NXF1-209	ENST00000531474	GYS1	P13807	737 aa		11.95	□□□□□ -0.5
NXF1-209	ENST00000531474	FRAT1	Q92837	279 aa	Predicted RBP	11.95	□□□□□ -0.5
NXF1-209	ENST00000531474	ATF5	Q9Y2D1	282 aa	Predicted RBP	11.95	□□□□□ -0.5
NXF1-209	ENST00000531474	ZNF652	Q9Y2D9	606 aa		11.95	□□□□□ -0.5
NXF1-209	ENST00000531474	DDX58	O95786	925 aa	Known RBP	11.94	□□□□□ -0.5
NXF1-209	ENST00000531474	FLII	Q13045	1269 aa		11.94	□□□□□ -0.5
NXF1-209	ENST00000531474	NLGN1	Q8N2Q7	840 aa		11.94	□□□□□ -0.5
NXF1-209	ENST00000531474	MRPL50	Q8N5N7	158 aa	Known RBP	11.94	□□□□□ -0.5
NXF1-209	ENST00000531474	BCL2L12	Q9HB09	334 aa		11.94	□□□□□ -0.5
NXF1-209	ENST00000531474	ERVV-1	B6SEH8	477 aa		11.93	□□□□□ -0.5
NXF1-209	ENST00000531474	FKBP5	Q13451	457 aa	Predicted RBP	11.93	□□□□□ -0.5
NXF1-209	ENST00000531474	HLF	Q16534	295 aa		11.93	□□□□□ -0.5
NXF1-209	ENST00000531474	BICDL1	Q6ZP65	573 aa		11.93	□□□□□ -0.5
NXF1-209	ENST00000531474	ANKRD13D	Q6ZTN6	518 aa		11.93	□□□□□ -0.5
NXF1-209	ENST00000531474	RIC3	Q7Z5B4	369 aa		11.93	□□□□□ -0.5
NXF1-209	ENST00000531474	DZIP1L	Q8IYY4	767 aa	Known RBP	11.93	□□□□□ -0.5
NXF1-209	ENST00000531474	PLBD2	Q8NHP8	589 aa		11.93	□□□□□ -0.5
NXF1-209	ENST00000531474	ARHGAP45	Q92619	1136 aa		11.93	□□□□□ -0.5
NXF1-209	ENST00000531474	BCOR	Q6W2J9	1755 aa		11.92	□□□□□ -0.5
NXF1-209	ENST00000531474	MMP10	P09238	476 aa		11.92	□□□□□ -0.5
NXF1-209	ENST00000531474	TBC1D9B	Q66K14	1250 aa		11.92	□□□□□ -0.5
NXF1-209	ENST00000531474	FTSJ3	Q8IY81	847 aa	Known RBP	11.92	□□□□□ -0.5
NXF1-209	ENST00000531474	CNKSR2	Q8WXI2	1034 aa		11.92	□□□□□ -0.5
NXF1-209	ENST00000531474	CLUAP1	Q96AJ1	413 aa		11.92	□□□□□ -0.5
NXF1-209	ENST00000531474	SPON1	Q9HCB6	807 aa		11.92	□□□□□ -0.5
NXF1-209	ENST00000531474	KDM2B	Q8NHM5	1336 aa		11.91	□□□□□ -0.5
NXF1-209	ENST00000531474	PI4KAP2	A4QPH2	592 aa		11.91	□□□□□ -0.5
NXF1-209	ENST00000531474	RGL2	O15211	777 aa		11.91	□□□□□ -0.5
NXF1-209	ENST00000531474	GPT	P24298	496 aa		11.91	□□□□□ -0.5
NXF1-209	ENST00000531474	POLD1	P28340	1107 aa		11.91	□□□□□ -0.5
NXF1-209	ENST00000531474	NFIX	Q14938	502 aa		11.91	□□□□□ -0.5
NXF1-209	ENST00000531474	CLEC4G	Q6UXB4	293 aa		11.91	□□□□□ -0.5
NXF1-209	ENST00000531474	KSR2	Q6VAB6	950 aa		11.91	□□□□□ -0.5
NXF1-209	ENST00000531474	ATF7IP	Q6VMQ6	1270 aa		11.91	□□□□□ -0.5
NXF1-209	ENST00000531474	GIGYF2	Q6Y7W6	1299 aa	Known RBP	11.91	□□□□□ -0.5
NXF1-209	ENST00000531474	PI4KAP1	Q8N8J0	262 aa		11.91	□□□□□ -0.5
NXF1-209	ENST00000531474	NIP7	Q9Y221	180 aa	Known RBP eCLIP	11.91	□□□□□ -0.5
NXF1-209	ENST00000531474	MAP3K2	Q9Y2U5	619 aa		11.91	□□□□□ -0.5
NXF1-209	ENST00000531474	ADCY9	O60503	1353 aa		11.91	□□□□□ -0.5
NXF1-209	ENST00000531474	DDR1	Q08345	913 aa		11.9	□□□□□ -0.5
NXF1-209	ENST00000531474	MVP	Q14764	893 aa	Known RBP	11.9	□□□□□ -0.5
NXF1-209	ENST00000531474	HSP90AB3P	Q58FF7	597 aa		11.9	□□□□□ -0.5
NXF1-209	ENST00000531474	SETDB2	Q96T68	719 aa		11.9	□□□□□ -0.5
NXF1-209	ENST00000531474	RWDD1	Q9H446	243 aa	Predicted RBP	11.9	□□□□□ -0.5
NXF1-209	ENST00000531474	ATP10D	Q9P241	1426 aa		11.9	□□□□□ -0.5
NXF1-209	ENST00000531474	DDX19B	Q9UMR2	479 aa		11.9	□□□□□ -0.5
NXF1-209	ENST00000531474	COG6	Q9Y2V7	657 aa		11.9	□□□□□ -0.5
NXF1-209	ENST00000531474	PTPRC	P08575	1304 aa		11.89	□□□□□ -0.51
NXF1-209	ENST00000531474	FAM177B	A6PVY3	158 aa		11.89	□□□□□ -0.51
NXF1-209	ENST00000531474		F6X3S4	739 aa		11.89	□□□□□ -0.51
NXF1-209	ENST00000531474	TM4SF1	P30408	202 aa		11.89	□□□□□ -0.51
NXF1-209	ENST00000531474	PTGER2	P43116	358 aa		11.89	□□□□□ -0.51
NXF1-209	ENST00000531474	PANK1	Q8TE04	598 aa		11.89	□□□□□ -0.51
NXF1-209	ENST00000531474	MYD88	Q99836	296 aa		11.89	□□□□□ -0.51
NXF1-209	ENST00000531474	METTL22	Q9BUU2	404 aa	Predicted RBP	11.89	□□□□□ -0.51
NXF1-209	ENST00000531474	NOB1	Q9ULX3	412 aa	Known RBP	11.89	□□□□□ -0.51
NXF1-209	ENST00000531474	PARP3	Q9Y6F1	533 aa		11.89	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms