RNA–Protein interactions for RNA: ENST00000531341.1

CHKA-206, Transcript of choline kinase alpha, humanhuman

TSL 3

Gene CHKA, Length 524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHKA-206ENST00000531341 PRPF40BQ6NWY9 871 aaKnown RBP28.36■■■□□ 2.13
CHKA-206ENST00000531341 LTBP3Q9NS15 1303 aa28.36■■■□□ 2.13
CHKA-206ENST00000531341 SLX4Q8IY92 1834 aa28.36■■■□□ 2.13
CHKA-206ENST00000531341 DZIP3Q86Y13 1208 aaKnown RBP28.35■■■□□ 2.13
CHKA-206ENST00000531341 DICER1Q9UPY3 1922 aaKnown RBP28.34■■■□□ 2.13
CHKA-206ENST00000531341 BTBD11A6QL63 1104 aa28.34■■■□□ 2.13
CHKA-206ENST00000531341 STYK1Q6J9G0 422 aa28.34■■■□□ 2.13
CHKA-206ENST00000531341 CHADLQ6NUI6 762 aa28.34■■■□□ 2.13
CHKA-206ENST00000531341 CNKSR1Q969H4 720 aa28.34■■■□□ 2.13
CHKA-206ENST00000531341 NPHP1O15259 732 aa28.32■■■□□ 2.12
CHKA-206ENST00000531341 ST5P78524 1137 aa28.32■■■□□ 2.12
CHKA-206ENST00000531341 C7orf43Q8WVR3 580 aa28.32■■■□□ 2.12
CHKA-206ENST00000531341 MASTLQ96GX5 879 aa28.32■■■□□ 2.12
CHKA-206ENST00000531341 MKRN1Q9UHC7 482 aaKnown RBP28.32■■■□□ 2.12
CHKA-206ENST00000531341 PRKAR2BP31323 418 aa28.3■■■□□ 2.12
CHKA-206ENST00000531341 NPM2Q86SE8 214 aaKnown RBP28.3■■■□□ 2.12
CHKA-206ENST00000531341 RSPH6AQ9H0K4 717 aa28.3■■■□□ 2.12
CHKA-206ENST00000531341 CREBZFQ9NS37 354 aa28.3■■■□□ 2.12
CHKA-206ENST00000531341 NPC1L1Q9UHC9 1359 aa28.29■■■□□ 2.12
CHKA-206ENST00000531341 CACNA1SQ13698 1873 aa28.28■■■□□ 2.12
CHKA-206ENST00000531341 OLFM4Q6UX06 510 aa28.28■■■□□ 2.12
CHKA-206ENST00000531341 BCORQ6W2J9 1755 aa28.28■■■□□ 2.12
CHKA-206ENST00000531341 MCM10Q7L590 875 aa28.26■■■□□ 2.11
CHKA-206ENST00000531341 NBPF5PQ86XG9 351 aaPredicted RBP28.26■■■□□ 2.11
CHKA-206ENST00000531341 NBPF26B4DH59 902 aa28.24■■■□□ 2.11
CHKA-206ENST00000531341 SOGA3Q5TF21 947 aa28.24■■■□□ 2.11
CHKA-206ENST00000531341 NBPF10Q6P3W6 841 aaKnown RBP28.24■■■□□ 2.11
CHKA-206ENST00000531341 CLEC4GQ6UXB4 293 aa28.24■■■□□ 2.11
CHKA-206ENST00000531341 NBPF15Q8N660 670 aa28.24■■■□□ 2.11
CHKA-206ENST00000531341 TAF1DQ9H5J8 278 aaPredicted RBP28.24■■■□□ 2.11
CHKA-206ENST00000531341 PASKQ96RG2 1323 aa28.23■■■□□ 2.11
CHKA-206ENST00000531341 KLRG2A4D1S0 409 aaPredicted RBP28.23■■■□□ 2.11
CHKA-206ENST00000531341 DCTN1Q14203 1278 aa28.23■■■□□ 2.11
CHKA-206ENST00000531341 CCDC93Q567U6 631 aa28.23■■■□□ 2.11
CHKA-206ENST00000531341 L3MBTL3Q96JM7 780 aaPredicted RBP28.23■■■□□ 2.11
CHKA-206ENST00000531341 ZNF277Q9NRM2 450 aaPredicted RBP28.23■■■□□ 2.11
CHKA-206ENST00000531341 ARFGEF2Q9Y6D5 1785 aa28.23■■■□□ 2.11
CHKA-206ENST00000531341 ZNF541Q9H0D2 1346 aa28.22■■■□□ 2.11
CHKA-206ENST00000531341 FAM177BA6PVY3 158 aa28.22■■■□□ 2.11
CHKA-206ENST00000531341 SNRPA1P09661 255 aaKnown RBP28.22■■■□□ 2.11
CHKA-206ENST00000531341 NPR1P16066 1061 aa28.22■■■□□ 2.11
CHKA-206ENST00000531341 LDHDQ86WU2 507 aa28.21■■■□□ 2.11
CHKA-206ENST00000531341 NIP7Q9Y221 180 aaKnown RBP eCLIP28.21■■■□□ 2.11
CHKA-206ENST00000531341 FOXN1O15353 648 aa28.2■■■□□ 2.1
CHKA-206ENST00000531341 FKBP4Q02790 459 aaKnown RBP eCLIP28.2■■■□□ 2.1
CHKA-206ENST00000531341 CNTNAP1P78357 1384 aa28.2■■■□□ 2.1
CHKA-206ENST00000531341 IQCA1LA6NCM1 817 aa28.19■■■□□ 2.1
CHKA-206ENST00000531341 ITGBL1O95965 494 aaPredicted RBP28.19■■■□□ 2.1
CHKA-206ENST00000531341 HLFQ16534 295 aa28.19■■■□□ 2.1
CHKA-206ENST00000531341 TPTE2Q6XPS3 522 aa28.18■■■□□ 2.1
CHKA-206ENST00000531341 ZNF652Q9Y2D9 606 aa28.18■■■□□ 2.1
CHKA-206ENST00000531341 EAPPQ56P03 285 aaPredicted RBP28.17■■■□□ 2.1
CHKA-206ENST00000531341 U2AF1L5P0DN76 240 aaPredicted RBP28.16■■■□□ 2.1
CHKA-206ENST00000531341 U2AF1Q01081 240 aaKnown RBP eCLIP28.16■■■□□ 2.1
CHKA-206ENST00000531341 RTF1Q92541 710 aaKnown RBP28.16■■■□□ 2.1
CHKA-206ENST00000531341 CFAP53Q96M91 514 aa28.16■■■□□ 2.1
CHKA-206ENST00000531341 VEGFBP49765 207 aa28.15■■■□□ 2.1
CHKA-206ENST00000531341 MIS18AQ9NYP9 233 aa28.15■■■□□ 2.1
CHKA-206ENST00000531341 SCN4AP35499 1836 aa28.13■■■□□ 2.09
CHKA-206ENST00000531341 TMEM88BA6NKF7 163 aa28.13■■■□□ 2.09
CHKA-206ENST00000531341 SYNE4Q8N205 404 aa28.13■■■□□ 2.09
CHKA-206ENST00000531341 HACL1Q9UJ83 578 aa28.13■■■□□ 2.09
CHKA-206ENST00000531341 EPHX2P34913 555 aa28.12■■■□□ 2.09
CHKA-206ENST00000531341 RTKN2Q8IZC4 609 aa28.12■■■□□ 2.09
CHKA-206ENST00000531341 CLEC11AQ9Y240 323 aa28.12■■■□□ 2.09
CHKA-206ENST00000531341 NUDCQ9Y266 331 aa28.12■■■□□ 2.09
CHKA-206ENST00000531341 RNF123Q5XPI4 1314 aa28.12■■■□□ 2.09
CHKA-206ENST00000531341 FZD9O00144 591 aa28.11■■■□□ 2.09
CHKA-206ENST00000531341 PPP2R1AP30153 589 aa28.11■■■□□ 2.09
CHKA-206ENST00000531341 IARSP41252 1262 aaKnown RBP28.11■■■□□ 2.09
CHKA-206ENST00000531341 MAP1SQ66K74 1059 aaPredicted RBP28.1■■■□□ 2.09
CHKA-206ENST00000531341 SLC51AQ86UW1 340 aa28.1■■■□□ 2.09
CHKA-206ENST00000531341 SNED1Q8TER0 1413 aa28.09■■■□□ 2.09
CHKA-206ENST00000531341 RGL2O15211 777 aa28.09■■■□□ 2.09
CHKA-206ENST00000531341 ALDH1B1P30837 517 aa28.09■■■□□ 2.09
CHKA-206ENST00000531341 TAF7Q15545 349 aaPredicted RBP28.09■■■□□ 2.09
CHKA-206ENST00000531341 NUTM1Q86Y26 1132 aa28.09■■■□□ 2.09
CHKA-206ENST00000531341 NGEFQ8N5V2 710 aa28.09■■■□□ 2.09
CHKA-206ENST00000531341 ABCC12Q96J65 1359 aa28.09■■■□□ 2.09
CHKA-206ENST00000531341 ADAMTSL1Q8N6G6 1762 aa28.09■■■□□ 2.09
CHKA-206ENST00000531341 HTATSF1O43719 755 aaKnown RBP28.07■■■□□ 2.08
CHKA-206ENST00000531341 GTF2E1P29083 439 aaPredicted RBP28.07■■■□□ 2.08
CHKA-206ENST00000531341 CNTROBQ8N137 903 aa28.07■■■□□ 2.08
CHKA-206ENST00000531341 CRY2Q49AN0 593 aa28.06■■■□□ 2.08
CHKA-206ENST00000531341 PRDM10Q9NQV6 1147 aa28.06■■■□□ 2.08
CHKA-206ENST00000531341 COL4A5P29400 1685 aa28.06■■■□□ 2.08
CHKA-206ENST00000531341 WBP1LQ9NX94 342 aa28.05■■■□□ 2.08
CHKA-206ENST00000531341 TTLL7Q6ZT98 887 aa28.04■■■□□ 2.08
CHKA-206ENST00000531341 PNMA8AQ86V59 439 aaPredicted RBP28.04■■■□□ 2.08
CHKA-206ENST00000531341 GPC2Q8N158 579 aa28.04■■■□□ 2.08
CHKA-206ENST00000531341 CTCFP49711 727 aaPredicted RBP28.03■■■□□ 2.08
CHKA-206ENST00000531341 PSMD1Q99460 953 aa28.03■■■□□ 2.08
CHKA-206ENST00000531341 LBX1P52954 281 aa28.02■■■□□ 2.08
CHKA-206ENST00000531341 FMR1Q06787 632 aaKnown RBP eCLIP28.02■■■□□ 2.08
CHKA-206ENST00000531341 AIDAQ96BJ3 306 aa28.02■■■□□ 2.08
CHKA-206ENST00000531341 RRP7AQ9Y3A4 280 aaKnown RBP28.02■■■□□ 2.08
CHKA-206ENST00000531341 GJA3Q9Y6H8 435 aa28.02■■■□□ 2.08
CHKA-206ENST00000531341 RASSF10A6NK89 507 aa28.01■■■□□ 2.07
CHKA-206ENST00000531341 GPTP24298 496 aa28.01■■■□□ 2.07
CHKA-206ENST00000531341 DEFB115Q30KQ5 88 aa28.01■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms