RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 USTQ9Y2C2 406 aa5.58□□□□□ -1.52
CD44-229ENST00000528672 HCN4Q9Y3Q4 1203 aa5.58□□□□□ -1.52
CD44-229ENST00000528672 TXLNAP40222 546 aa5.57□□□□□ -1.52
CD44-229ENST00000528672 ECM1Q16610 540 aa5.57□□□□□ -1.52
CD44-229ENST00000528672 NBPF1Q3BBV0 1214 aa5.57□□□□□ -1.52
CD44-229ENST00000528672 C4orf17Q53FE4 359 aa5.57□□□□□ -1.52
CD44-229ENST00000528672 FOXR1Q6PIV2 292 aa5.57□□□□□ -1.52
CD44-229ENST00000528672 SV2AQ7L0J3 742 aa5.57□□□□□ -1.52
CD44-229ENST00000528672 TXNDC2Q86VQ3 553 aa5.57□□□□□ -1.52
CD44-229ENST00000528672 PATL2C9JE40 543 aaKnown RBP5.56□□□□□ -1.52
CD44-229ENST00000528672 ZBTB39O15060 712 aa5.56□□□□□ -1.52
CD44-229ENST00000528672 ABL1P00519 1130 aa5.56□□□□□ -1.52
CD44-229ENST00000528672 MARSP56192 900 aaKnown RBP5.56□□□□□ -1.52
CD44-229ENST00000528672 TEAD4Q15561 434 aa5.56□□□□□ -1.52
CD44-229ENST00000528672 ZNF428Q96B54 188 aa5.56□□□□□ -1.52
CD44-229ENST00000528672 ZNF837Q96EG3 531 aaPredicted RBP5.56□□□□□ -1.52
CD44-229ENST00000528672 LRFN2Q9ULH4 789 aa5.56□□□□□ -1.52
CD44-229ENST00000528672 PPP1R12BO60237 982 aaPredicted RBP5.55□□□□□ -1.52
CD44-229ENST00000528672 BRD1O95696 1058 aa5.55□□□□□ -1.52
CD44-229ENST00000528672 PSMA6P60900 246 aaKnown RBP5.55□□□□□ -1.52
CD44-229ENST00000528672 XP32Q5T750 250 aa5.55□□□□□ -1.52
CD44-229ENST00000528672 NLRP8Q86W28 1048 aa5.55□□□□□ -1.52
CD44-229ENST00000528672 PGBD3Q8N328 593 aa5.55□□□□□ -1.52
CD44-229ENST00000528672 VWA5B2Q8N398 1253 aa5.55□□□□□ -1.52
CD44-229ENST00000528672 GTF3C2Q8WUA4 911 aaPredicted RBP5.55□□□□□ -1.52
CD44-229ENST00000528672 SCARF2Q96GP6 870 aaPredicted RBP5.55□□□□□ -1.52
CD44-229ENST00000528672 USP20Q9Y2K6 914 aa5.55□□□□□ -1.52
CD44-229ENST00000528672 CHMP3Q9Y3E7 222 aa5.55□□□□□ -1.52
CD44-229ENST00000528672 TATP17735 454 aaPredicted RBP5.54□□□□□ -1.52
CD44-229ENST00000528672 ATP4AP20648 1035 aa5.54□□□□□ -1.52
CD44-229ENST00000528672 EFHC2Q5JST6 749 aa5.54□□□□□ -1.52
CD44-229ENST00000528672 C1orf53Q5VUE5 145 aa5.54□□□□□ -1.52
CD44-229ENST00000528672 FIGNL1Q6PIW4 674 aa5.54□□□□□ -1.52
CD44-229ENST00000528672 ATCAYQ86WG3 371 aa5.54□□□□□ -1.52
CD44-229ENST00000528672 CFHR5Q9BXR6 569 aa5.54□□□□□ -1.52
CD44-229ENST00000528672 NUCKS1Q9H1E3 243 aaKnown RBP5.54□□□□□ -1.52
CD44-229ENST00000528672 QTRT2Q9H974 415 aaKnown RBP5.54□□□□□ -1.52
CD44-229ENST00000528672 CABP1Q9NZU7 370 aa5.54□□□□□ -1.52
CD44-229ENST00000528672 KLK14Q9P0G3 267 aa5.54□□□□□ -1.52
CD44-229ENST00000528672 EML1O00423 815 aa5.53□□□□□ -1.52
CD44-229ENST00000528672 MSX1P28360 303 aa5.53□□□□□ -1.52
CD44-229ENST00000528672 PLA2G4AP47712 749 aa5.53□□□□□ -1.52
CD44-229ENST00000528672 MFAP1P55081 439 aaKnown RBP5.53□□□□□ -1.52
CD44-229ENST00000528672 SWI5Q1ZZU3 235 aa5.53□□□□□ -1.52
CD44-229ENST00000528672 COX20Q5RI15 118 aa5.53□□□□□ -1.52
CD44-229ENST00000528672 SAMD5Q5TGI4 173 aa5.53□□□□□ -1.52
CD44-229ENST00000528672 ZNF280CQ8ND82 737 aa5.53□□□□□ -1.52
CD44-229ENST00000528672 RGS22Q8NE09 1264 aa5.53□□□□□ -1.52
CD44-229ENST00000528672 FOXD4L4Q8WXT5 416 aaPredicted RBP5.53□□□□□ -1.52
CD44-229ENST00000528672 HSH2DQ96JZ2 352 aa5.53□□□□□ -1.52
CD44-229ENST00000528672 TRERF1Q96PN7 1200 aa5.53□□□□□ -1.52
CD44-229ENST00000528672 C2orf49Q9BVC5 232 aaPredicted RBP5.53□□□□□ -1.52
CD44-229ENST00000528672 LRRC4BQ9NT99 713 aa5.53□□□□□ -1.52
CD44-229ENST00000528672 HCN2Q9UL51 889 aa5.53□□□□□ -1.52
CD44-229ENST00000528672 PHF24Q9UPV7 400 aa5.53□□□□□ -1.52
CD44-229ENST00000528672 BCS1LQ9Y276 419 aa5.53□□□□□ -1.52
CD44-229ENST00000528672 CDC14CA4D256 554 aa5.52□□□□□ -1.53
CD44-229ENST00000528672 TNFRSF10BO14763 440 aa5.52□□□□□ -1.53
CD44-229ENST00000528672 THBS1P07996 1170 aa5.52□□□□□ -1.53
CD44-229ENST00000528672 IGFBP4P22692 258 aa5.52□□□□□ -1.53
CD44-229ENST00000528672 NOS2P35228 1153 aa5.52□□□□□ -1.53
CD44-229ENST00000528672 GRIN2CQ14957 1233 aa5.52□□□□□ -1.53
CD44-229ENST00000528672 DBN1Q16643 649 aa5.52□□□□□ -1.53
CD44-229ENST00000528672 HIF1AQ16665 826 aa5.52□□□□□ -1.53
CD44-229ENST00000528672 RIPOR1Q6ZS17 1223 aa5.52□□□□□ -1.53
CD44-229ENST00000528672 C7orf43Q8WVR3 580 aa5.52□□□□□ -1.53
CD44-229ENST00000528672 L3MBTL2Q969R5 705 aa5.52□□□□□ -1.53
CD44-229ENST00000528672 GAS2L1Q99501 681 aaPredicted RBP5.52□□□□□ -1.53
CD44-229ENST00000528672 CUEDC1Q9NWM3 386 aaPredicted RBP5.52□□□□□ -1.53
CD44-229ENST00000528672 ATXN7L1Q9ULK2 861 aaPredicted RBP5.52□□□□□ -1.53
CD44-229ENST00000528672 NSFL1CQ9UNZ2 370 aaKnown RBP5.52□□□□□ -1.53
CD44-229ENST00000528672 MTMR7Q9Y216 660 aa5.52□□□□□ -1.53
CD44-229ENST00000528672 SERTM1A2A2V5 107 aa5.51□□□□□ -1.53
CD44-229ENST00000528672 SRSF11Q05519 484 aaKnown RBP5.51□□□□□ -1.53
CD44-229ENST00000528672 KCNA1Q09470 495 aa5.51□□□□□ -1.53
CD44-229ENST00000528672 UBAP2LQ14157 1087 aaKnown RBP5.51□□□□□ -1.53
CD44-229ENST00000528672 LYPD4Q6UWN0 246 aa5.51□□□□□ -1.53
CD44-229ENST00000528672 AIDAQ96BJ3 306 aa5.51□□□□□ -1.53
CD44-229ENST00000528672 GPAMQ9HCL2 828 aa5.51□□□□□ -1.53
CD44-229ENST00000528672 MBIPQ9NS73 344 aa5.51□□□□□ -1.53
CD44-229ENST00000528672 ZNF232Q9UNY5 417 aa5.51□□□□□ -1.53
CD44-229ENST00000528672 H3BRB1 525 aa5.5□□□□□ -1.53
CD44-229ENST00000528672 MSTNO14793 375 aa5.5□□□□□ -1.53
CD44-229ENST00000528672 FOXO3O43524 673 aa5.5□□□□□ -1.53
CD44-229ENST00000528672 ADAM23O75077 832 aa5.5□□□□□ -1.53
CD44-229ENST00000528672 ADAMTS2O95450 1211 aa5.5□□□□□ -1.53
CD44-229ENST00000528672 MPSTP25325 297 aa5.5□□□□□ -1.53
CD44-229ENST00000528672 TAGLNQ01995 201 aaKnown RBP5.5□□□□□ -1.53
CD44-229ENST00000528672 LAMC2Q13753 1193 aa5.5□□□□□ -1.53
CD44-229ENST00000528672 ALDH16A1Q8IZ83 802 aa5.5□□□□□ -1.53
CD44-229ENST00000528672 PHACTR1Q9C0D0 580 aa5.5□□□□□ -1.53
CD44-229ENST00000528672 TUT1Q9H6E5 874 aaKnown RBP5.5□□□□□ -1.53
CD44-229ENST00000528672 NDFIP2Q9NV92 336 aa5.5□□□□□ -1.53
CD44-229ENST00000528672 A6NHS1 94 aa5.49□□□□□ -1.53
CD44-229ENST00000528672 SOWAHDA6NJG2 315 aa5.49□□□□□ -1.53
CD44-229ENST00000528672 FAM157BP0CG42 384 aa5.49□□□□□ -1.53
CD44-229ENST00000528672 GAS6Q14393 721 aa5.49□□□□□ -1.53
CD44-229ENST00000528672 PLA2G4EQ3MJ16 856 aa5.49□□□□□ -1.53
CD44-229ENST00000528672 FAM182BQ5T319 152 aa5.49□□□□□ -1.53
CD44-229ENST00000528672 ETFBKMTQ8IXQ9 262 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms