RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 MCM10Q7L590 875 aa31.54■■■□□ 2.64
CPSF1-202ENST00000527827 LTBP3Q9NS15 1303 aa31.52■■■□□ 2.64
CPSF1-202ENST00000527827 U2AF1L5P0DN76 240 aaPredicted RBP31.52■■■□□ 2.64
CPSF1-202ENST00000527827 SRGNP10124 158 aa31.52■■■□□ 2.64
CPSF1-202ENST00000527827 PPP2R1AP30153 589 aa31.52■■■□□ 2.64
CPSF1-202ENST00000527827 ST5P78524 1137 aa31.52■■■□□ 2.64
CPSF1-202ENST00000527827 U2AF1Q01081 240 aaKnown RBP eCLIP31.52■■■□□ 2.64
CPSF1-202ENST00000527827 ERFEQ4G0M1 354 aa31.52■■■□□ 2.64
CPSF1-202ENST00000527827 STYK1Q6J9G0 422 aa31.52■■■□□ 2.64
CPSF1-202ENST00000527827 DPY19L2Q6NUT2 758 aa31.52■■■□□ 2.64
CPSF1-202ENST00000527827 CNKSR1Q969H4 720 aa31.52■■■□□ 2.64
CPSF1-202ENST00000527827 NPHP1O15259 732 aa31.51■■■□□ 2.63
CPSF1-202ENST00000527827 SNRPA1P09661 255 aaKnown RBP31.51■■■□□ 2.63
CPSF1-202ENST00000527827 RTF1Q92541 710 aaKnown RBP31.5■■■□□ 2.63
CPSF1-202ENST00000527827 DCTN1Q14203 1278 aa31.49■■■□□ 2.63
CPSF1-202ENST00000527827 PRPF40BQ6NWY9 871 aaKnown RBP31.49■■■□□ 2.63
CPSF1-202ENST00000527827 CLEC4GQ6UXB4 293 aa31.49■■■□□ 2.63
CPSF1-202ENST00000527827 MASTLQ96GX5 879 aa31.49■■■□□ 2.63
CPSF1-202ENST00000527827 TAOK3Q9H2K8 898 aa31.49■■■□□ 2.63
CPSF1-202ENST00000527827 NBPF26B4DH59 902 aa31.46■■■□□ 2.63
CPSF1-202ENST00000527827 NBPF10Q6P3W6 841 aaKnown RBP31.46■■■□□ 2.63
CPSF1-202ENST00000527827 NBPF5PQ86XG9 351 aaPredicted RBP31.46■■■□□ 2.63
CPSF1-202ENST00000527827 NBPF15Q8N660 670 aa31.46■■■□□ 2.63
CPSF1-202ENST00000527827 PCNTO95613 3336 aa31.44■■■□□ 2.62
CPSF1-202ENST00000527827 HTATSF1O43719 755 aaKnown RBP31.44■■■□□ 2.62
CPSF1-202ENST00000527827 ZNF652Q9Y2D9 606 aa31.44■■■□□ 2.62
CPSF1-202ENST00000527827 COL13A1Q5TAT6 717 aaPredicted RBP31.43■■■□□ 2.62
CPSF1-202ENST00000527827 SOGA3Q5TF21 947 aa31.43■■■□□ 2.62
CPSF1-202ENST00000527827 C7orf43Q8WVR3 580 aa31.43■■■□□ 2.62
CPSF1-202ENST00000527827 KLRG2A4D1S0 409 aaPredicted RBP31.41■■■□□ 2.62
CPSF1-202ENST00000527827 DDNO94850 711 aaPredicted RBP31.41■■■□□ 2.62
CPSF1-202ENST00000527827 RGL2O15211 777 aa31.4■■■□□ 2.62
CPSF1-202ENST00000527827 LAMB4A4D0S4 1761 aa31.4■■■□□ 2.62
CPSF1-202ENST00000527827 DLG5Q8TDM6 1919 aa31.39■■■□□ 2.62
CPSF1-202ENST00000527827 NPR1P16066 1061 aa31.39■■■□□ 2.62
CPSF1-202ENST00000527827 TAF7Q15545 349 aaPredicted RBP31.39■■■□□ 2.62
CPSF1-202ENST00000527827 NIP7Q9Y221 180 aaKnown RBP eCLIP31.39■■■□□ 2.62
CPSF1-202ENST00000527827 TPTE2Q6XPS3 522 aa31.38■■■□□ 2.61
CPSF1-202ENST00000527827 MIS18AQ9NYP9 233 aa31.38■■■□□ 2.61
CPSF1-202ENST00000527827 POTEIP0CG38 1075 aa31.37■■■□□ 2.61
CPSF1-202ENST00000527827 POTEJP0CG39 1038 aa31.37■■■□□ 2.61
CPSF1-202ENST00000527827 HLFQ16534 295 aa31.36■■■□□ 2.61
CPSF1-202ENST00000527827 CCDC93Q567U6 631 aa31.36■■■□□ 2.61
CPSF1-202ENST00000527827 CHADLQ6NUI6 762 aa31.36■■■□□ 2.61
CPSF1-202ENST00000527827 KDM3BQ7LBC6 1761 aa31.35■■■□□ 2.61
CPSF1-202ENST00000527827 FAM177BA6PVY3 158 aa31.34■■■□□ 2.61
CPSF1-202ENST00000527827 OLFM4Q6UX06 510 aa31.33■■■□□ 2.61
CPSF1-202ENST00000527827 SCN4AP35499 1836 aa31.33■■■□□ 2.61
CPSF1-202ENST00000527827 FKBP4Q02790 459 aaKnown RBP eCLIP31.32■■■□□ 2.6
CPSF1-202ENST00000527827 HSPA1AP0DMV8 641 aaKnown RBP31.31■■■□□ 2.6
CPSF1-202ENST00000527827 HSPA1BP0DMV9 641 aaKnown RBP31.31■■■□□ 2.6
CPSF1-202ENST00000527827 L3MBTL3Q96JM7 780 aaPredicted RBP31.31■■■□□ 2.6
CPSF1-202ENST00000527827 NUP98P52948 1817 aa31.31■■■□□ 2.6
CPSF1-202ENST00000527827 ZNF277Q9NRM2 450 aaPredicted RBP31.3■■■□□ 2.6
CPSF1-202ENST00000527827 IQCA1LA6NCM1 817 aa31.28■■■□□ 2.6
CPSF1-202ENST00000527827 CREBZFQ9NS37 354 aa31.28■■■□□ 2.6
CPSF1-202ENST00000527827 ZNF541Q9H0D2 1346 aa31.27■■■□□ 2.6
CPSF1-202ENST00000527827 RTKN2Q8IZC4 609 aa31.27■■■□□ 2.6
CPSF1-202ENST00000527827 NGEFQ8N5V2 710 aa31.27■■■□□ 2.6
CPSF1-202ENST00000527827 PNISRQ8TF01 805 aaKnown RBP31.27■■■□□ 2.6
CPSF1-202ENST00000527827 PLEKHF1Q96S99 279 aa31.27■■■□□ 2.6
CPSF1-202ENST00000527827 TAF1DQ9H5J8 278 aaPredicted RBP31.27■■■□□ 2.6
CPSF1-202ENST00000527827 ALDH1B1P30837 517 aa31.26■■■□□ 2.59
CPSF1-202ENST00000527827 ABCC12Q96J65 1359 aa31.26■■■□□ 2.59
CPSF1-202ENST00000527827 ERVV-1B6SEH8 477 aa31.25■■■□□ 2.59
CPSF1-202ENST00000527827 GTF2E1P29083 439 aaPredicted RBP31.25■■■□□ 2.59
CPSF1-202ENST00000527827 EIF4A1P60842 406 aaKnown RBP31.25■■■□□ 2.59
CPSF1-202ENST00000527827 LDHDQ86WU2 507 aa31.25■■■□□ 2.59
CPSF1-202ENST00000527827 TNS4Q8IZW8 715 aa31.25■■■□□ 2.59
CPSF1-202ENST00000527827 SNED1Q8TER0 1413 aa31.24■■■□□ 2.59
CPSF1-202ENST00000527827 NEFMP07197 916 aa31.24■■■□□ 2.59
CPSF1-202ENST00000527827 CRY2Q49AN0 593 aa31.24■■■□□ 2.59
CPSF1-202ENST00000527827 THUMPD2Q9BTF0 503 aaKnown RBP31.24■■■□□ 2.59
CPSF1-202ENST00000527827 MAP3K15Q6ZN16 1313 aa31.24■■■□□ 2.59
CPSF1-202ENST00000527827 PASKQ96RG2 1323 aa31.24■■■□□ 2.59
CPSF1-202ENST00000527827 TTLL7Q6ZT98 887 aa31.23■■■□□ 2.59
CPSF1-202ENST00000527827 NUTM1Q86Y26 1132 aa31.23■■■□□ 2.59
CPSF1-202ENST00000527827 MKRN1Q9UHC7 482 aaKnown RBP31.23■■■□□ 2.59
CPSF1-202ENST00000527827 NFE2L2Q16236 605 aa31.22■■■□□ 2.59
CPSF1-202ENST00000527827 SYNE4Q8N205 404 aa31.22■■■□□ 2.59
CPSF1-202ENST00000527827 NYXQ9GZU5 481 aa31.22■■■□□ 2.59
CPSF1-202ENST00000527827 RRP7AQ9Y3A4 280 aaKnown RBP31.22■■■□□ 2.59
CPSF1-202ENST00000527827 IARSP41252 1262 aaKnown RBP31.21■■■□□ 2.59
CPSF1-202ENST00000527827 ADAMTSL1Q8N6G6 1762 aa31.2■■■□□ 2.59
CPSF1-202ENST00000527827 FZD9O00144 591 aa31.2■■■□□ 2.59
CPSF1-202ENST00000527827 MYL6BP14649 208 aa31.19■■■□□ 2.58
CPSF1-202ENST00000527827 KIF6Q6ZMV9 814 aa31.19■■■□□ 2.58
CPSF1-202ENST00000527827 UBN2Q6ZU65 1347 aa31.19■■■□□ 2.58
CPSF1-202ENST00000527827 ITGBL1O95965 494 aaPredicted RBP31.18■■■□□ 2.58
CPSF1-202ENST00000527827 PSMD1Q99460 953 aa31.18■■■□□ 2.58
CPSF1-202ENST00000527827 HACL1Q9UJ83 578 aa31.18■■■□□ 2.58
CPSF1-202ENST00000527827 IBTKQ9P2D0 1353 aaPredicted RBP31.17■■■□□ 2.58
CPSF1-202ENST00000527827 RIC1Q4ADV7 1423 aa31.17■■■□□ 2.58
CPSF1-202ENST00000527827 GPTP24298 496 aa31.17■■■□□ 2.58
CPSF1-202ENST00000527827 EAPPQ56P03 285 aaPredicted RBP31.17■■■□□ 2.58
CPSF1-202ENST00000527827 ZBTB3Q9H5J0 574 aa31.17■■■□□ 2.58
CPSF1-202ENST00000527827 CNTNAP1P78357 1384 aa31.17■■■□□ 2.58
CPSF1-202ENST00000527827 CAPN15O75808 1086 aa31.16■■■□□ 2.58
CPSF1-202ENST00000527827 EPHX2P34913 555 aa31.16■■■□□ 2.58
CPSF1-202ENST00000527827 HOXA10P31260 410 aaPredicted RBP31.15■■■□□ 2.58
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms