RNA–Protein interactions for RNA: ENST00000527275.5

SMPD1-203, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SMPD1, Length 2,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-203ENST00000527275 RIC3Q7Z5B4 369 aa23.65■■□□□ 1.38
SMPD1-203ENST00000527275 SLC27A3Q5K4L6 730 aa23.65■■□□□ 1.38
SMPD1-203ENST00000527275 TNS1Q9HBL0 1735 aaKnown RBP23.64■■□□□ 1.38
SMPD1-203ENST00000527275 EIF5P55010 431 aaKnown RBP23.64■■□□□ 1.38
SMPD1-203ENST00000527275 ARXQ96QS3 562 aa23.64■■□□□ 1.38
SMPD1-203ENST00000527275 CNTNAP4Q9C0A0 1308 aa23.64■■□□□ 1.38
SMPD1-203ENST00000527275 TAF1LQ8IZX4 1826 aa23.64■■□□□ 1.37
SMPD1-203ENST00000527275 CCT4P50991 539 aaKnown RBP23.63■■□□□ 1.37
SMPD1-203ENST00000527275 NPM2Q86SE8 214 aaKnown RBP23.63■■□□□ 1.37
SMPD1-203ENST00000527275 PLBD2Q8NHP8 589 aa23.63■■□□□ 1.37
SMPD1-203ENST00000527275 ZBTB3Q9H5J0 574 aa23.62■■□□□ 1.37
SMPD1-203ENST00000527275 RC3H1Q5TC82 1133 aaKnown RBP23.62■■□□□ 1.37
SMPD1-203ENST00000527275 RREB1Q92766 1687 aa23.62■■□□□ 1.37
SMPD1-203ENST00000527275 BEND3Q5T5X7 828 aa23.61■■□□□ 1.37
SMPD1-203ENST00000527275 PXDNLA1KZ92 1463 aa23.61■■□□□ 1.37
SMPD1-203ENST00000527275 ZBTB7BO15156 539 aaPredicted RBP23.61■■□□□ 1.37
SMPD1-203ENST00000527275 RWDD1Q9H446 243 aaPredicted RBP23.61■■□□□ 1.37
SMPD1-203ENST00000527275 TBC1D2BQ9UPU7 963 aa23.6■■□□□ 1.37
SMPD1-203ENST00000527275 GNPATO15228 680 aa23.59■■□□□ 1.37
SMPD1-203ENST00000527275 KIF6Q6ZMV9 814 aa23.59■■□□□ 1.37
SMPD1-203ENST00000527275 METTL22Q9BUU2 404 aaPredicted RBP23.59■■□□□ 1.37
SMPD1-203ENST00000527275 SRCIN1Q9C0H9 1055 aa23.59■■□□□ 1.37
SMPD1-203ENST00000527275 SMIM5Q71RC9 77 aa23.59■■□□□ 1.37
SMPD1-203ENST00000527275 DZIP3Q86Y13 1208 aaKnown RBP23.59■■□□□ 1.37
SMPD1-203ENST00000527275 C4BP0C0L5 1744 aa23.58■■□□□ 1.37
SMPD1-203ENST00000527275 CWF19L2Q2TBE0 894 aaKnown RBP23.58■■□□□ 1.37
SMPD1-203ENST00000527275 ZBTB40Q9NUA8 1239 aa23.58■■□□□ 1.37
SMPD1-203ENST00000527275 ATP10DQ9P241 1426 aa23.58■■□□□ 1.36
SMPD1-203ENST00000527275 ARFGEF2Q9Y6D5 1785 aa23.58■■□□□ 1.36
SMPD1-203ENST00000527275 MAP3K15Q6ZN16 1313 aa23.57■■□□□ 1.36
SMPD1-203ENST00000527275 RPS6KA4O75676 772 aa23.57■■□□□ 1.36
SMPD1-203ENST00000527275 EN1Q05925 392 aaPredicted RBP23.57■■□□□ 1.36
SMPD1-203ENST00000527275 AMIGO3Q86WK7 504 aa23.57■■□□□ 1.36
SMPD1-203ENST00000527275 LINS1Q8NG48 757 aa23.57■■□□□ 1.36
SMPD1-203ENST00000527275 MYD88Q99836 296 aa23.57■■□□□ 1.36
SMPD1-203ENST00000527275 COL15A1P39059 1388 aa23.57■■□□□ 1.36
SMPD1-203ENST00000527275 IGKV5-2P06315 115 aa23.57■■□□□ 1.36
SMPD1-203ENST00000527275 PDE4AP27815 886 aa23.57■■□□□ 1.36
SMPD1-203ENST00000527275 NEXNQ0ZGT2 675 aa23.57■■□□□ 1.36
SMPD1-203ENST00000527275 MEIS3Q99687 375 aa23.57■■□□□ 1.36
SMPD1-203ENST00000527275 AK7Q96M32 723 aa23.56■■□□□ 1.36
SMPD1-203ENST00000527275 RTCBQ9Y3I0 505 aaKnown RBP23.56■■□□□ 1.36
SMPD1-203ENST00000527275 SF3B2Q13435 895 aaKnown RBP23.55■■□□□ 1.36
SMPD1-203ENST00000527275 NUP188Q5SRE5 1749 aa23.55■■□□□ 1.36
SMPD1-203ENST00000527275 N4BP2Q86UW6 1770 aaPredicted RBP23.55■■□□□ 1.36
SMPD1-203ENST00000527275 ATP5J2-PTCD1G3V325 749 aa23.55■■□□□ 1.36
SMPD1-203ENST00000527275 HLFQ16534 295 aa23.55■■□□□ 1.36
SMPD1-203ENST00000527275 CHMP4BQ9H444 224 aaKnown RBP23.55■■□□□ 1.36
SMPD1-203ENST00000527275 RGS3P49796 1198 aa23.54■■□□□ 1.36
SMPD1-203ENST00000527275 EZH2Q15910 746 aaKnown RBP23.54■■□□□ 1.36
SMPD1-203ENST00000527275 CAMKK2Q96RR4 588 aa23.54■■□□□ 1.36
SMPD1-203ENST00000527275 USP44Q9H0E7 712 aa23.54■■□□□ 1.36
SMPD1-203ENST00000527275 BACH2Q9BYV9 841 aa23.54■■□□□ 1.36
SMPD1-203ENST00000527275 ERVV-1B6SEH8 477 aa23.53■■□□□ 1.36
SMPD1-203ENST00000527275 ALDH1L1O75891 902 aa23.53■■□□□ 1.36
SMPD1-203ENST00000527275 GIGYF2Q6Y7W6 1299 aaKnown RBP23.53■■□□□ 1.36
SMPD1-203ENST00000527275 RGPD3A6NKT7 1758 aaPredicted RBP23.53■■□□□ 1.36
SMPD1-203ENST00000527275 RGPD4Q7Z3J3 1758 aa23.53■■□□□ 1.36
SMPD1-203ENST00000527275 NEURL1BA8MQ27 555 aa23.52■■□□□ 1.36
SMPD1-203ENST00000527275 DEFB132Q7Z7B7 95 aa23.52■■□□□ 1.36
SMPD1-203ENST00000527275 CAMTA2O94983 1202 aa23.52■■□□□ 1.36
SMPD1-203ENST00000527275 TCIRG1Q13488 830 aa23.52■■□□□ 1.36
SMPD1-203ENST00000527275 HDAC1Q13547 482 aaPredicted RBP23.52■■□□□ 1.36
SMPD1-203ENST00000527275 C1orf115Q9H7X2 142 aa23.52■■□□□ 1.36
SMPD1-203ENST00000527275 PHF14O94880 888 aa23.51■■□□□ 1.35
SMPD1-203ENST00000527275 HMGB2P26583 209 aaKnown RBP23.51■■□□□ 1.35
SMPD1-203ENST00000527275 A0A087WZG4 1122 aa23.51■■□□□ 1.35
SMPD1-203ENST00000527275 BAG6P46379 1132 aa23.51■■□□□ 1.35
SMPD1-203ENST00000527275 NBPF7P0C2Y1 421 aaPredicted RBP23.5■■□□□ 1.35
SMPD1-203ENST00000527275 ARHGEF1Q92888 912 aaKnown RBP23.5■■□□□ 1.35
SMPD1-203ENST00000527275 GCKRQ14397 625 aa23.5■■□□□ 1.35
SMPD1-203ENST00000527275 TRAPPC3LQ5T215 181 aa23.5■■□□□ 1.35
SMPD1-203ENST00000527275 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.49■■□□□ 1.35
SMPD1-203ENST00000527275 C9orf78Q9NZ63 289 aaPredicted RBP23.49■■□□□ 1.35
SMPD1-203ENST00000527275 GNAI3P08754 354 aa23.48■■□□□ 1.35
SMPD1-203ENST00000527275 ZNF827Q17R98 1081 aa23.48■■□□□ 1.35
SMPD1-203ENST00000527275 ISCA1Q9BUE6 129 aa23.48■■□□□ 1.35
SMPD1-203ENST00000527275 NUP98P52948 1817 aa23.48■■□□□ 1.35
SMPD1-203ENST00000527275 UBR3Q6ZT12 1888 aa23.48■■□□□ 1.35
SMPD1-203ENST00000527275 CCDC125Q86Z20 511 aa23.48■■□□□ 1.35
SMPD1-203ENST00000527275 GRM8O00222 908 aa23.47■■□□□ 1.35
SMPD1-203ENST00000527275 UBTFL1P0CB47 393 aaPredicted RBP23.47■■□□□ 1.35
SMPD1-203ENST00000527275 GPTP24298 496 aa23.47■■□□□ 1.35
SMPD1-203ENST00000527275 HSP90AB3PQ58FF7 597 aa23.47■■□□□ 1.35
SMPD1-203ENST00000527275 AKT1S1Q96B36 256 aa23.47■■□□□ 1.35
SMPD1-203ENST00000527275 NARFQ9UHQ1 456 aa23.47■■□□□ 1.35
SMPD1-203ENST00000527275 PDZRN3Q9UPQ7 1066 aa23.47■■□□□ 1.35
SMPD1-203ENST00000527275 TFCP2L1Q9NZI6 479 aa23.47■■□□□ 1.35
SMPD1-203ENST00000527275 SRP68Q9UHB9 627 aaKnown RBP23.47■■□□□ 1.35
SMPD1-203ENST00000527275 AFDNP55196 1824 aaKnown RBP23.46■■□□□ 1.35
SMPD1-203ENST00000527275 ADRA2BP18089 450 aa23.46■■□□□ 1.35
SMPD1-203ENST00000527275 RFC4P35249 363 aa23.46■■□□□ 1.35
SMPD1-203ENST00000527275 CCDC191Q8NCU4 936 aa23.46■■□□□ 1.35
SMPD1-203ENST00000527275 CWC25Q9NXE8 425 aaPredicted RBP23.46■■□□□ 1.35
SMPD1-203ENST00000527275 ZPR1O75312 459 aa23.45■■□□□ 1.35
SMPD1-203ENST00000527275 SSFA2P28290 1259 aa23.45■■□□□ 1.35
SMPD1-203ENST00000527275 TRIM28Q13263 835 aaKnown RBP23.45■■□□□ 1.35
SMPD1-203ENST00000527275 USPL1Q5W0Q7 1092 aa23.45■■□□□ 1.35
SMPD1-203ENST00000527275 IBTKQ9P2D0 1353 aaPredicted RBP23.44■■□□□ 1.34
SMPD1-203ENST00000527275 GNAI2P04899 355 aa23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms