RNA–Protein interactions for RNA: ENST00000527154.5

CHMP4A-203, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 571 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-203ENST00000527154 ZNF496Q96IT1 587 aaPredicted RBP22.18■■□□□ 1.14
CHMP4A-203ENST00000527154 PCDH10Q9P2E7 1040 aa22.18■■□□□ 1.14
CHMP4A-203ENST00000527154 CNBD1Q8NA66 436 aa22.17■■□□□ 1.14
CHMP4A-203ENST00000527154 TEX13AQ9BXU3 409 aaPredicted RBP22.17■■□□□ 1.14
CHMP4A-203ENST00000527154 SNED1Q8TER0 1413 aa22.16■■□□□ 1.14
CHMP4A-203ENST00000527154 ZNF541Q9H0D2 1346 aa22.16■■□□□ 1.14
CHMP4A-203ENST00000527154 DEFB115Q30KQ5 88 aa22.16■■□□□ 1.14
CHMP4A-203ENST00000527154 TBC1D2BQ9UPU7 963 aa22.16■■□□□ 1.14
CHMP4A-203ENST00000527154 BCORQ6W2J9 1755 aa22.15■■□□□ 1.14
CHMP4A-203ENST00000527154 MAP2K1Q02750 393 aaPredicted RBP22.15■■□□□ 1.14
CHMP4A-203ENST00000527154 ZNF790Q6PG37 636 aa22.15■■□□□ 1.14
CHMP4A-203ENST00000527154 SETDB2Q96T68 719 aa22.15■■□□□ 1.14
CHMP4A-203ENST00000527154 HACL1Q9UJ83 578 aa22.15■■□□□ 1.14
CHMP4A-203ENST00000527154 WDR33Q9C0J8 1336 aaKnown RBP22.14■■□□□ 1.14
CHMP4A-203ENST00000527154 FZD9O00144 591 aa22.14■■□□□ 1.13
CHMP4A-203ENST00000527154 EPHX2P34913 555 aa22.14■■□□□ 1.13
CHMP4A-203ENST00000527154 FKBP4Q02790 459 aaKnown RBP eCLIP22.14■■□□□ 1.13
CHMP4A-203ENST00000527154 CCDC93Q567U6 631 aa22.14■■□□□ 1.13
CHMP4A-203ENST00000527154 PNMA8AQ86V59 439 aaPredicted RBP22.14■■□□□ 1.13
CHMP4A-203ENST00000527154 ST5P78524 1137 aa22.13■■□□□ 1.13
CHMP4A-203ENST00000527154 AMER1Q5JTC6 1135 aaPredicted RBP22.13■■□□□ 1.13
CHMP4A-203ENST00000527154 SIPA1L3O60292 1781 aaPredicted RBP22.12■■□□□ 1.13
CHMP4A-203ENST00000527154 TTC5Q8N0Z6 440 aa22.12■■□□□ 1.13
CHMP4A-203ENST00000527154 CNTROBQ8N137 903 aa22.12■■□□□ 1.13
CHMP4A-203ENST00000527154 RGL2O15211 777 aa22.11■■□□□ 1.13
CHMP4A-203ENST00000527154 HMOX1P09601 288 aa22.11■■□□□ 1.13
CHMP4A-203ENST00000527154 CLEC4GQ6UXB4 293 aa22.11■■□□□ 1.13
CHMP4A-203ENST00000527154 IL17REQ8NFR9 667 aa22.11■■□□□ 1.13
CHMP4A-203ENST00000527154 CACNA1SQ13698 1873 aa22.11■■□□□ 1.13
CHMP4A-203ENST00000527154 NPR1P16066 1061 aa22.1■■□□□ 1.13
CHMP4A-203ENST00000527154 EAPPQ56P03 285 aaPredicted RBP22.1■■□□□ 1.13
CHMP4A-203ENST00000527154 POLR3GLQ9BT43 218 aa22.1■■□□□ 1.13
CHMP4A-203ENST00000527154 MAP1SQ66K74 1059 aaPredicted RBP22.09■■□□□ 1.13
CHMP4A-203ENST00000527154 ZNF277Q9NRM2 450 aaPredicted RBP22.09■■□□□ 1.13
CHMP4A-203ENST00000527154 CEMIPQ8WUJ3 1361 aa22.09■■□□□ 1.13
CHMP4A-203ENST00000527154 RNF123Q5XPI4 1314 aa22.08■■□□□ 1.13
CHMP4A-203ENST00000527154 A1BGP04217 495 aa22.08■■□□□ 1.13
CHMP4A-203ENST00000527154 GPC2Q8N158 579 aa22.08■■□□□ 1.13
CHMP4A-203ENST00000527154 DDX21Q9NR30 783 aaKnown RBP eCLIP22.08■■□□□ 1.13
CHMP4A-203ENST00000527154 MLLT1Q03111 559 aaPredicted RBP22.07■■□□□ 1.12
CHMP4A-203ENST00000527154 RTKN2Q8IZC4 609 aa22.07■■□□□ 1.12
CHMP4A-203ENST00000527154 DZIP3Q86Y13 1208 aaKnown RBP22.06■■□□□ 1.12
CHMP4A-203ENST00000527154 IARSP41252 1262 aaKnown RBP22.05■■□□□ 1.12
CHMP4A-203ENST00000527154 OLFM4Q6UX06 510 aa22.05■■□□□ 1.12
CHMP4A-203ENST00000527154 FMNL2Q96PY5 1086 aa22.05■■□□□ 1.12
CHMP4A-203ENST00000527154 PSMD1Q99460 953 aa22.05■■□□□ 1.12
CHMP4A-203ENST00000527154 CLEC11AQ9Y240 323 aa22.05■■□□□ 1.12
CHMP4A-203ENST00000527154 KNSTRNQ9Y448 316 aa22.05■■□□□ 1.12
CHMP4A-203ENST00000527154 LTBP1Q14766 1721 aa22.05■■□□□ 1.12
CHMP4A-203ENST00000527154 COL3A1P02461 1466 aaPredicted RBP22.04■■□□□ 1.12
CHMP4A-203ENST00000527154 COL4A5P29400 1685 aa22.04■■□□□ 1.12
CHMP4A-203ENST00000527154 HSPA5P11021 654 aaKnown RBP22.03■■□□□ 1.12
CHMP4A-203ENST00000527154 EIF4G2P78344 907 aaKnown RBP eCLIP22.03■■□□□ 1.12
CHMP4A-203ENST00000527154 TEFQ10587 303 aa22.03■■□□□ 1.12
CHMP4A-203ENST00000527154 NBPF5PQ86XG9 351 aaPredicted RBP22.03■■□□□ 1.12
CHMP4A-203ENST00000527154 ZNF330Q9Y3S2 320 aaPredicted RBP22.03■■□□□ 1.12
CHMP4A-203ENST00000527154 GNAT3A8MTJ3 354 aa22.02■■□□□ 1.12
CHMP4A-203ENST00000527154 DIAPH1O60610 1272 aaKnown RBP22.02■■□□□ 1.12
CHMP4A-203ENST00000527154 CAPNS2Q96L46 248 aa22.02■■□□□ 1.12
CHMP4A-203ENST00000527154 ABT1Q9ULW3 272 aaKnown RBP22.02■■□□□ 1.12
CHMP4A-203ENST00000527154 ECE1P42892 770 aa22.01■■□□□ 1.11
CHMP4A-203ENST00000527154 CRY2Q49AN0 593 aa22.01■■□□□ 1.11
CHMP4A-203ENST00000527154 CST9Q5W186 159 aa22.01■■□□□ 1.11
CHMP4A-203ENST00000527154 SYNE4Q8N205 404 aa22.01■■□□□ 1.11
CHMP4A-203ENST00000527154 GAS2L2Q8NHY3 880 aa22.01■■□□□ 1.11
CHMP4A-203ENST00000527154 USP16Q9Y5T5 823 aa22.01■■□□□ 1.11
CHMP4A-203ENST00000527154 NPHP1O15259 732 aa22■■□□□ 1.11
CHMP4A-203ENST00000527154 SCNN1DP51172 638 aa22■■□□□ 1.11
CHMP4A-203ENST00000527154 TLL2Q9Y6L7 1015 aa22■■□□□ 1.11
CHMP4A-203ENST00000527154 KCNQ3O43525 872 aa21.99■■□□□ 1.11
CHMP4A-203ENST00000527154 ALDH1B1P30837 517 aa21.99■■□□□ 1.11
CHMP4A-203ENST00000527154 MAP2K2P36507 400 aa21.99■■□□□ 1.11
CHMP4A-203ENST00000527154 TPTE2Q6XPS3 522 aa21.99■■□□□ 1.11
CHMP4A-203ENST00000527154 GPR101Q96P66 508 aaPredicted RBP21.99■■□□□ 1.11
CHMP4A-203ENST00000527154 ZNF652Q9Y2D9 606 aa21.99■■□□□ 1.11
CHMP4A-203ENST00000527154 CCDC85CA6NKD9 419 aa21.98■■□□□ 1.11
CHMP4A-203ENST00000527154 FMR1Q06787 632 aaKnown RBP eCLIP21.98■■□□□ 1.11
CHMP4A-203ENST00000527154 NPM2Q86SE8 214 aaKnown RBP21.98■■□□□ 1.11
CHMP4A-203ENST00000527154 PER1O15534 1290 aaPredicted RBP21.97■■□□□ 1.11
CHMP4A-203ENST00000527154 CC2D2BQ6DHV5 1058 aa21.97■■□□□ 1.11
CHMP4A-203ENST00000527154 CYP4F22Q6NT55 531 aa21.97■■□□□ 1.11
CHMP4A-203ENST00000527154 TNRC18O15417 2968 aaPredicted RBP21.97■■□□□ 1.11
CHMP4A-203ENST00000527154 CLSPNQ9HAW4 1339 aa21.97■■□□□ 1.11
CHMP4A-203ENST00000527154 USP50Q70EL3 339 aaPredicted RBP21.96■■□□□ 1.11
CHMP4A-203ENST00000527154 HHIPL1Q96JK4 782 aa21.96■■□□□ 1.11
CHMP4A-203ENST00000527154 RIC1Q4ADV7 1423 aa21.96■■□□□ 1.11
CHMP4A-203ENST00000527154 TRPM7Q96QT4 1865 aa21.95■■□□□ 1.1
CHMP4A-203ENST00000527154 NBPF26B4DH59 902 aa21.95■■□□□ 1.1
CHMP4A-203ENST00000527154 CA12O43570 354 aa21.95■■□□□ 1.1
CHMP4A-203ENST00000527154 EPS15P42566 896 aa21.95■■□□□ 1.1
CHMP4A-203ENST00000527154 NBPF10Q6P3W6 841 aaKnown RBP21.95■■□□□ 1.1
CHMP4A-203ENST00000527154 NBPF15Q8N660 670 aa21.95■■□□□ 1.1
CHMP4A-203ENST00000527154 JDP2Q8WYK2 163 aa21.95■■□□□ 1.1
CHMP4A-203ENST00000527154 BEGAINQ9BUH8 593 aa21.95■■□□□ 1.1
CHMP4A-203ENST00000527154 PRAMEF22A3QJZ6 481 aa21.94■■□□□ 1.1
CHMP4A-203ENST00000527154 PIP4K2AP48426 406 aaPredicted RBP21.94■■□□□ 1.1
CHMP4A-203ENST00000527154 NIP7Q9Y221 180 aaKnown RBP eCLIP21.94■■□□□ 1.1
CHMP4A-203ENST00000527154 BTBD11A6QL63 1104 aa21.93■■□□□ 1.1
CHMP4A-203ENST00000527154 HOXA10P31260 410 aaPredicted RBP21.93■■□□□ 1.1
CHMP4A-203ENST00000527154 GRIPAP1Q4V328 841 aa21.93■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms