RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-216	ENST00000525293	SCG3	Q8WXD2	468 aa	Known RBP	4.95	□□□□□ -1.62
CD44-216	ENST00000525293	NEUROD4	Q9HD90	331 aa		4.95	□□□□□ -1.62
CD44-216	ENST00000525293	OIP5	O43482	229 aa		4.94	□□□□□ -1.62
CD44-216	ENST00000525293	CD33	P20138	364 aa		4.94	□□□□□ -1.62
CD44-216	ENST00000525293	KCNMA1	Q12791	1236 aa		4.94	□□□□□ -1.62
CD44-216	ENST00000525293	KCTD17	Q8N5Z5	321 aa		4.94	□□□□□ -1.62
CD44-216	ENST00000525293	GALNT6	Q8NCL4	622 aa		4.94	□□□□□ -1.62
CD44-216	ENST00000525293	RHPN1	Q8TCX5	695 aa		4.94	□□□□□ -1.62
CD44-216	ENST00000525293	PHACTR1	Q9C0D0	580 aa		4.94	□□□□□ -1.62
CD44-216	ENST00000525293	HCN2	Q9UL51	889 aa		4.94	□□□□□ -1.62
CD44-216	ENST00000525293	HIRA	P54198	1017 aa	Predicted RBP	4.93	□□□□□ -1.62
CD44-216	ENST00000525293	SAMD5	Q5TGI4	173 aa		4.93	□□□□□ -1.62
CD44-216	ENST00000525293	C1orf53	Q5VUE5	145 aa		4.93	□□□□□ -1.62
CD44-216	ENST00000525293	POTEA	Q6S8J7	498 aa		4.93	□□□□□ -1.62
CD44-216	ENST00000525293	C1orf229	Q6ZS94	237 aa	Predicted RBP	4.93	□□□□□ -1.62
CD44-216	ENST00000525293	ARX	Q96QS3	562 aa		4.93	□□□□□ -1.62
CD44-216	ENST00000525293	C2orf49	Q9BVC5	232 aa	Predicted RBP	4.93	□□□□□ -1.62
CD44-216	ENST00000525293	STRN4	Q9NRL3	753 aa		4.93	□□□□□ -1.62
CD44-216	ENST00000525293	GDF2	Q9UK05	429 aa	Predicted RBP	4.93	□□□□□ -1.62
CD44-216	ENST00000525293	DNMT3A	Q9Y6K1	912 aa	Predicted RBP	4.93	□□□□□ -1.62
CD44-216	ENST00000525293	SHISA8	B8ZZ34	492 aa		4.92	□□□□□ -1.62
CD44-216	ENST00000525293	FAM157B	P0CG42	384 aa		4.92	□□□□□ -1.62
CD44-216	ENST00000525293	ALDH16A1	Q8IZ83	802 aa		4.92	□□□□□ -1.62
CD44-216	ENST00000525293	STAG2	Q8N3U4	1231 aa		4.92	□□□□□ -1.62
CD44-216	ENST00000525293	GOLGA6L1	Q8N7Z2	621 aa		4.92	□□□□□ -1.62
CD44-216	ENST00000525293	FAM200A	Q8TCP9	573 aa		4.92	□□□□□ -1.62
CD44-216	ENST00000525293	EDARADD	Q8WWZ3	215 aa		4.92	□□□□□ -1.62
CD44-216	ENST00000525293	SCARF2	Q96GP6	870 aa	Predicted RBP	4.92	□□□□□ -1.62
CD44-216	ENST00000525293	NGLY1	Q96IV0	654 aa		4.92	□□□□□ -1.62
CD44-216	ENST00000525293	HSH2D	Q96JZ2	352 aa		4.92	□□□□□ -1.62
CD44-216	ENST00000525293	LRRC4B	Q9NT99	713 aa		4.92	□□□□□ -1.62
CD44-216	ENST00000525293	MARK1	Q9P0L2	795 aa		4.92	□□□□□ -1.62
CD44-216	ENST00000525293	GGA1	Q9UJY5	639 aa		4.92	□□□□□ -1.62
CD44-216	ENST00000525293	PRR12	Q9ULL5	1215 aa		4.92	□□□□□ -1.62
CD44-216	ENST00000525293	CNTNAP5	Q8WYK1	1306 aa		4.92	□□□□□ -1.62
CD44-216	ENST00000525293	ARID3C	A6NKF2	412 aa		4.91	□□□□□ -1.62
CD44-216	ENST00000525293	NEURL1B	A8MQ27	555 aa		4.91	□□□□□ -1.62
CD44-216	ENST00000525293	RNF225	M0QZC1	329 aa	Predicted RBP	4.91	□□□□□ -1.62
CD44-216	ENST00000525293	EFS	O43281	561 aa		4.91	□□□□□ -1.62
CD44-216	ENST00000525293	ARAF	P10398	606 aa		4.91	□□□□□ -1.62
CD44-216	ENST00000525293	IRS1	P35568	1242 aa		4.91	□□□□□ -1.62
CD44-216	ENST00000525293	RASSF7	Q02833	373 aa		4.91	□□□□□ -1.62
CD44-216	ENST00000525293	SFSWAP	Q12872	951 aa	Known RBP	4.91	□□□□□ -1.62
CD44-216	ENST00000525293	FAM182B	Q5T319	152 aa		4.91	□□□□□ -1.62
CD44-216	ENST00000525293	ZNF280C	Q8ND82	737 aa		4.91	□□□□□ -1.62
CD44-216	ENST00000525293	SUSD3	Q96L08	255 aa		4.91	□□□□□ -1.62
CD44-216	ENST00000525293	ANKIB1	Q9P2G1	1089 aa		4.91	□□□□□ -1.62
CD44-216	ENST00000525293	NOVA2	Q9UNW9	492 aa	Known RBP	4.91	□□□□□ -1.62
CD44-216	ENST00000525293	GPC6	Q9Y625	555 aa	Predicted RBP	4.91	□□□□□ -1.62
CD44-216	ENST00000525293	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	4.9	□□□□□ -1.63
CD44-216	ENST00000525293	GDF11	O95390	407 aa		4.9	□□□□□ -1.63
CD44-216	ENST00000525293	IGFBP4	P22692	258 aa		4.9	□□□□□ -1.63
CD44-216	ENST00000525293	PCBP4	P57723	403 aa	Known RBP	4.9	□□□□□ -1.63
CD44-216	ENST00000525293	LAMC2	Q13753	1193 aa		4.9	□□□□□ -1.63
CD44-216	ENST00000525293	GRIN2C	Q14957	1233 aa		4.9	□□□□□ -1.63
CD44-216	ENST00000525293	TMEM151A	Q8N4L1	468 aa		4.9	□□□□□ -1.63
CD44-216	ENST00000525293	BEND7	Q8N7W2	519 aa	Predicted RBP	4.9	□□□□□ -1.63
CD44-216	ENST00000525293	CEP63	Q96MT8	703 aa		4.9	□□□□□ -1.63
CD44-216	ENST00000525293	KLF15	Q9UIH9	416 aa		4.9	□□□□□ -1.63
CD44-216	ENST00000525293	AMPD1	P23109	780 aa		4.89	□□□□□ -1.63
CD44-216	ENST00000525293	ADH6	P28332	368 aa		4.89	□□□□□ -1.63
CD44-216	ENST00000525293	WEE1	P30291	646 aa		4.89	□□□□□ -1.63
CD44-216	ENST00000525293	SRPK2	P78362	688 aa	Known RBP	4.89	□□□□□ -1.63
CD44-216	ENST00000525293	SLCO4C1	Q6ZQN7	724 aa		4.89	□□□□□ -1.63
CD44-216	ENST00000525293	PODN	Q7Z5L7	613 aa		4.89	□□□□□ -1.63
CD44-216	ENST00000525293	CCDC97	Q96F63	343 aa	Predicted RBP	4.89	□□□□□ -1.63
CD44-216	ENST00000525293	RRAGC	Q9HB90	399 aa		4.89	□□□□□ -1.63
CD44-216	ENST00000525293	BRD7	Q9NPI1	651 aa		4.89	□□□□□ -1.63
CD44-216	ENST00000525293	PHF20L1	A8MW92	1017 aa		4.88	□□□□□ -1.63
CD44-216	ENST00000525293	EPX	P11678	715 aa		4.88	□□□□□ -1.63
CD44-216	ENST00000525293	SNRPN	P63162	240 aa	Known RBP	4.88	□□□□□ -1.63
CD44-216	ENST00000525293	RTN1	Q16799	776 aa		4.88	□□□□□ -1.63
CD44-216	ENST00000525293	ZNF468	Q5VIY5	522 aa	Predicted RBP	4.88	□□□□□ -1.63
CD44-216	ENST00000525293	KANK3	Q6NY19	840 aa		4.88	□□□□□ -1.63
CD44-216	ENST00000525293	SYT9	Q86SS6	491 aa		4.88	□□□□□ -1.63
CD44-216	ENST00000525293	FCHSD1	Q86WN1	690 aa		4.88	□□□□□ -1.63
CD44-216	ENST00000525293	VTI1A	Q96AJ9	217 aa		4.88	□□□□□ -1.63
CD44-216	ENST00000525293	BTBD6	Q96KE9	485 aa		4.88	□□□□□ -1.63
CD44-216	ENST00000525293	PRIMPOL	Q96LW4	560 aa		4.88	□□□□□ -1.63
CD44-216	ENST00000525293	SLC30A3	Q99726	388 aa		4.88	□□□□□ -1.63
CD44-216	ENST00000525293	AVEN	Q9NQS1	362 aa	Predicted RBP	4.88	□□□□□ -1.63
CD44-216	ENST00000525293	SERPINA10	Q9UK55	444 aa		4.88	□□□□□ -1.63
CD44-216	ENST00000525293	ZMIZ1	Q9ULJ6	1067 aa		4.88	□□□□□ -1.63
CD44-216	ENST00000525293	FOXO3	O43524	673 aa		4.87	□□□□□ -1.63
CD44-216	ENST00000525293	TYRO3	Q06418	890 aa		4.87	□□□□□ -1.63
CD44-216	ENST00000525293	ELOA	Q14241	798 aa	Known RBP	4.87	□□□□□ -1.63
CD44-216	ENST00000525293	HIF1A	Q16665	826 aa		4.87	□□□□□ -1.63
CD44-216	ENST00000525293	BTLA	Q7Z6A9	289 aa		4.87	□□□□□ -1.63
CD44-216	ENST00000525293	RAB44	Q7Z6P3	723 aa	Predicted RBP	4.87	□□□□□ -1.63
CD44-216	ENST00000525293	STK32A	Q8WU08	396 aa		4.87	□□□□□ -1.63
CD44-216	ENST00000525293	KLK14	Q9P0G3	267 aa		4.87	□□□□□ -1.63
CD44-216	ENST00000525293	KCNH4	Q9UQ05	1017 aa		4.87	□□□□□ -1.63
CD44-216	ENST00000525293	PRMT3	O60678	531 aa		4.86	□□□□□ -1.63
CD44-216	ENST00000525293	ATG7	O95352	703 aa		4.86	□□□□□ -1.63
CD44-216	ENST00000525293	SPEM2	Q0P670	501 aa		4.86	□□□□□ -1.63
CD44-216	ENST00000525293	FAM69C	Q0P6D2	419 aa		4.86	□□□□□ -1.63
CD44-216	ENST00000525293	SWI5	Q1ZZU3	235 aa		4.86	□□□□□ -1.63
CD44-216	ENST00000525293	C14orf37	Q86TY3	774 aa		4.86	□□□□□ -1.63
CD44-216	ENST00000525293	PBXIP1	Q96AQ6	731 aa		4.86	□□□□□ -1.63
CD44-216	ENST00000525293	MKL2	Q9ULH7	1088 aa		4.86	□□□□□ -1.63

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