RNA–Protein interactions for RNA: ENST00000523261.1

NKX3-1-202, Transcript of NK3 homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NKX3-1, Length 713 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-202ENST00000523261 RNF123Q5XPI4 1314 aa19.2■□□□□ 0.66
NKX3-1-202ENST00000523261 SRGNP10124 158 aa19.19■□□□□ 0.66
NKX3-1-202ENST00000523261 CDCA8Q53HL2 280 aa19.19■□□□□ 0.66
NKX3-1-202ENST00000523261 PAXIP1Q6ZW49 1069 aaPredicted RBP19.19■□□□□ 0.66
NKX3-1-202ENST00000523261 SLC52A2Q9HAB3 445 aa19.19■□□□□ 0.66
NKX3-1-202ENST00000523261 CASP8AP2Q9UKL3 1982 aa19.19■□□□□ 0.66
NKX3-1-202ENST00000523261 SCN7AQ01118 1682 aa19.18■□□□□ 0.66
NKX3-1-202ENST00000523261 CANXP27824 592 aaKnown RBP19.18■□□□□ 0.66
NKX3-1-202ENST00000523261 EIF5P55010 431 aaKnown RBP19.18■□□□□ 0.66
NKX3-1-202ENST00000523261 GRM1Q13255 1194 aa19.18■□□□□ 0.66
NKX3-1-202ENST00000523261 SLC39A6Q13433 755 aa19.18■□□□□ 0.66
NKX3-1-202ENST00000523261 C7orf43Q8WVR3 580 aa19.18■□□□□ 0.66
NKX3-1-202ENST00000523261 TNNT2P45379 298 aaPredicted RBP19.17■□□□□ 0.66
NKX3-1-202ENST00000523261 FMR1Q06787 632 aaKnown RBP eCLIP19.17■□□□□ 0.66
NKX3-1-202ENST00000523261 MRC1P22897 1456 aa19.16■□□□□ 0.66
NKX3-1-202ENST00000523261 CCDC93Q567U6 631 aa19.16■□□□□ 0.66
NKX3-1-202ENST00000523261 MASTLQ96GX5 879 aa19.16■□□□□ 0.66
NKX3-1-202ENST00000523261 ZNF277Q9NRM2 450 aaPredicted RBP19.16■□□□□ 0.66
NKX3-1-202ENST00000523261 A0A087WZG4 1122 aa19.15■□□□□ 0.66
NKX3-1-202ENST00000523261 AOC2O75106 756 aa19.15■□□□□ 0.66
NKX3-1-202ENST00000523261 MAP2K2P36507 400 aa19.15■□□□□ 0.66
NKX3-1-202ENST00000523261 FKBP4Q02790 459 aaKnown RBP eCLIP19.15■□□□□ 0.66
NKX3-1-202ENST00000523261 VSIG10Q8N0Z9 540 aa19.15■□□□□ 0.66
NKX3-1-202ENST00000523261 FZD9O00144 591 aa19.14■□□□□ 0.65
NKX3-1-202ENST00000523261 CA12O43570 354 aa19.14■□□□□ 0.65
NKX3-1-202ENST00000523261 DGKZQ13574 1117 aa19.14■□□□□ 0.65
NKX3-1-202ENST00000523261 CNBD1Q8NA66 436 aa19.14■□□□□ 0.65
NKX3-1-202ENST00000523261 LGR6Q9HBX8 967 aa19.14■□□□□ 0.65
NKX3-1-202ENST00000523261 TRPM7Q96QT4 1865 aa19.14■□□□□ 0.65
NKX3-1-202ENST00000523261 CST9Q5W186 159 aa19.13■□□□□ 0.65
NKX3-1-202ENST00000523261 GPC2Q8N158 579 aa19.13■□□□□ 0.65
NKX3-1-202ENST00000523261 TLL2Q9Y6L7 1015 aa19.13■□□□□ 0.65
NKX3-1-202ENST00000523261 AKAP4Q5JQC9 854 aa19.12■□□□□ 0.65
NKX3-1-202ENST00000523261 UBR2Q8IWV8 1755 aa19.11■□□□□ 0.65
NKX3-1-202ENST00000523261 ST5P78524 1137 aa19.11■□□□□ 0.65
NKX3-1-202ENST00000523261 PRPF38BQ5VTL8 546 aaKnown RBP19.11■□□□□ 0.65
NKX3-1-202ENST00000523261 RNMTO43148 476 aaKnown RBP19.1■□□□□ 0.65
NKX3-1-202ENST00000523261 SULT6B1Q6IMI4 303 aa19.1■□□□□ 0.65
NKX3-1-202ENST00000523261 OLFM4Q6UX06 510 aa19.1■□□□□ 0.65
NKX3-1-202ENST00000523261 SETDB2Q96T68 719 aa19.1■□□□□ 0.65
NKX3-1-202ENST00000523261 TBC1D2BQ9UPU7 963 aa19.1■□□□□ 0.65
NKX3-1-202ENST00000523261 TRAF5O00463 557 aa19.09■□□□□ 0.65
NKX3-1-202ENST00000523261 NPHP1O15259 732 aa19.09■□□□□ 0.65
NKX3-1-202ENST00000523261 STARD3NLO95772 234 aa19.09■□□□□ 0.65
NKX3-1-202ENST00000523261 IARSP41252 1262 aaKnown RBP19.09■□□□□ 0.65
NKX3-1-202ENST00000523261 BRPF1P55201 1214 aaPredicted RBP19.08■□□□□ 0.64
NKX3-1-202ENST00000523261 RTKN2Q8IZC4 609 aa19.08■□□□□ 0.64
NKX3-1-202ENST00000523261 NPR1P16066 1061 aa19.07■□□□□ 0.64
NKX3-1-202ENST00000523261 SOX10P56693 466 aa19.07■□□□□ 0.64
NKX3-1-202ENST00000523261 CAMTA2O94983 1202 aa19.06■□□□□ 0.64
NKX3-1-202ENST00000523261 SAPCD2Q86UD0 394 aa19.06■□□□□ 0.64
NKX3-1-202ENST00000523261 SYNE4Q8N205 404 aa19.06■□□□□ 0.64
NKX3-1-202ENST00000523261 KLRG2A4D1S0 409 aaPredicted RBP19.05■□□□□ 0.64
NKX3-1-202ENST00000523261 LMOD1P29536 600 aaPredicted RBP19.05■□□□□ 0.64
NKX3-1-202ENST00000523261 IL6STP40189 918 aaPredicted RBP19.05■□□□□ 0.64
NKX3-1-202ENST00000523261 EPS15P42566 896 aa19.05■□□□□ 0.64
NKX3-1-202ENST00000523261 SCNN1DP51172 638 aa19.05■□□□□ 0.64
NKX3-1-202ENST00000523261 ZNF330Q9Y3S2 320 aaPredicted RBP19.05■□□□□ 0.64
NKX3-1-202ENST00000523261 BCORQ6W2J9 1755 aa19.05■□□□□ 0.64
NKX3-1-202ENST00000523261 SNED1Q8TER0 1413 aa19.04■□□□□ 0.64
NKX3-1-202ENST00000523261 GJA3Q9Y6H8 435 aa19.04■□□□□ 0.64
NKX3-1-202ENST00000523261 COL4A5P29400 1685 aa19.04■□□□□ 0.64
NKX3-1-202ENST00000523261 CIAPIN1Q6FI81 312 aa19.03■□□□□ 0.64
NKX3-1-202ENST00000523261 USP50Q70EL3 339 aaPredicted RBP19.03■□□□□ 0.64
NKX3-1-202ENST00000523261 JDP2Q8WYK2 163 aa19.03■□□□□ 0.64
NKX3-1-202ENST00000523261 HHIPL1Q96JK4 782 aa19.03■□□□□ 0.64
NKX3-1-202ENST00000523261 EIF6P56537 245 aaKnown RBP19.02■□□□□ 0.64
NKX3-1-202ENST00000523261 IL13P35225 146 aa19.01■□□□□ 0.63
NKX3-1-202ENST00000523261 NBPF5PQ86XG9 351 aaPredicted RBP19.01■□□□□ 0.63
NKX3-1-202ENST00000523261 TTC5Q8N0Z6 440 aa19.01■□□□□ 0.63
NKX3-1-202ENST00000523261 ZNF496Q96IT1 587 aaPredicted RBP19.01■□□□□ 0.63
NKX3-1-202ENST00000523261 PSMD1Q99460 953 aa19.01■□□□□ 0.63
NKX3-1-202ENST00000523261 HEG1Q9ULI3 1381 aa19.01■□□□□ 0.63
NKX3-1-202ENST00000523261 CELF2O95319 508 aaKnown RBP19■□□□□ 0.63
NKX3-1-202ENST00000523261 TEX13AQ9BXU3 409 aaPredicted RBP19■□□□□ 0.63
NKX3-1-202ENST00000523261 A1BGP04217 495 aa18.99■□□□□ 0.63
NKX3-1-202ENST00000523261 DZIP3Q86Y13 1208 aaKnown RBP18.98■□□□□ 0.63
NKX3-1-202ENST00000523261 ZIC5Q96T25 663 aa18.98■□□□□ 0.63
NKX3-1-202ENST00000523261 ALDH1B1P30837 517 aa18.97■□□□□ 0.63
NKX3-1-202ENST00000523261 NPM2Q86SE8 214 aaKnown RBP18.97■□□□□ 0.63
NKX3-1-202ENST00000523261 NOGQ13253 232 aa18.96■□□□□ 0.63
NKX3-1-202ENST00000523261 MTHFSDQ2M296 383 aaKnown RBP18.96■□□□□ 0.63
NKX3-1-202ENST00000523261 ZNF790Q6PG37 636 aa18.95■□□□□ 0.62
NKX3-1-202ENST00000523261 CLEC4GQ6UXB4 293 aa18.95■□□□□ 0.62
NKX3-1-202ENST00000523261 GLIS2Q9BZE0 524 aaPredicted RBP18.95■□□□□ 0.62
NKX3-1-202ENST00000523261 ADARB2Q9NS39 739 aaKnown RBP18.95■□□□□ 0.62
NKX3-1-202ENST00000523261 TPTE2Q6XPS3 522 aa18.93■□□□□ 0.62
NKX3-1-202ENST00000523261 GPRC5DQ9NZD1 345 aa18.93■□□□□ 0.62
NKX3-1-202ENST00000523261 CC2D2BQ6DHV5 1058 aa18.92■□□□□ 0.62
NKX3-1-202ENST00000523261 LARGE2Q8N3Y3 721 aa18.92■□□□□ 0.62
NKX3-1-202ENST00000523261 SAGE1Q9NXZ1 904 aa18.92■□□□□ 0.62
NKX3-1-202ENST00000523261 PGAP2Q9UHJ9 254 aa18.92■□□□□ 0.62
NKX3-1-202ENST00000523261 SIPA1L3O60292 1781 aaPredicted RBP18.91■□□□□ 0.62
NKX3-1-202ENST00000523261 HMOX1P09601 288 aa18.91■□□□□ 0.62
NKX3-1-202ENST00000523261 MORC1Q86VD1 984 aa18.91■□□□□ 0.62
NKX3-1-202ENST00000523261 ZNF408Q9H9D4 720 aa18.91■□□□□ 0.62
NKX3-1-202ENST00000523261 ZNF652Q9Y2D9 606 aa18.91■□□□□ 0.62
NKX3-1-202ENST00000523261 FMNL2Q96PY5 1086 aa18.9■□□□□ 0.62
NKX3-1-202ENST00000523261 PIP4K2AP48426 406 aaPredicted RBP18.89■□□□□ 0.61
NKX3-1-202ENST00000523261 CRY2Q49AN0 593 aa18.89■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms