RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 AAMPQ13685 434 aa16.57■□□□□ 0.24
CPNE3-205ENST00000522240 NBPF14Q5TI25 921 aa16.57■□□□□ 0.24
CPNE3-205ENST00000522240 NBPF10Q6P3W6 841 aaKnown RBP16.57■□□□□ 0.24
CPNE3-205ENST00000522240 NBPF15Q8N660 670 aa16.57■□□□□ 0.24
CPNE3-205ENST00000522240 IBTKQ9P2D0 1353 aaPredicted RBP16.56■□□□□ 0.24
CPNE3-205ENST00000522240 CNTNAP4Q9C0A0 1308 aa16.56■□□□□ 0.24
CPNE3-205ENST00000522240 A1BGP04217 495 aa16.56■□□□□ 0.24
CPNE3-205ENST00000522240 MYL6BP14649 208 aa16.56■□□□□ 0.24
CPNE3-205ENST00000522240 EN1Q05925 392 aaPredicted RBP16.56■□□□□ 0.24
CPNE3-205ENST00000522240 INTS3Q68E01 1043 aaKnown RBP16.56■□□□□ 0.24
CPNE3-205ENST00000522240 TMEM57Q8N5G2 664 aa16.56■□□□□ 0.24
CPNE3-205ENST00000522240 DDX19BQ9UMR2 479 aa16.56■□□□□ 0.24
CPNE3-205ENST00000522240 COG6Q9Y2V7 657 aa16.56■□□□□ 0.24
CPNE3-205ENST00000522240 C4BP0C0L5 1744 aa16.56■□□□□ 0.24
CPNE3-205ENST00000522240 PSDA5PKW4 1024 aaPredicted RBP16.55■□□□□ 0.24
CPNE3-205ENST00000522240 HMGB2P26583 209 aaKnown RBP16.55■□□□□ 0.24
CPNE3-205ENST00000522240 EXOC6Q8TAG9 804 aa16.55■□□□□ 0.24
CPNE3-205ENST00000522240 XAGE3Q8WTP9 111 aa16.55■□□□□ 0.24
CPNE3-205ENST00000522240 CCDC87Q9NVE4 849 aa16.55■□□□□ 0.24
CPNE3-205ENST00000522240 CCNL1Q9UK58 526 aaPredicted RBP16.55■□□□□ 0.24
CPNE3-205ENST00000522240 MYH14Q7Z406 1995 aaKnown RBP16.55■□□□□ 0.24
CPNE3-205ENST00000522240 IL6STP40189 918 aaPredicted RBP16.54■□□□□ 0.24
CPNE3-205ENST00000522240 CRKLP46109 303 aaKnown RBP16.54■□□□□ 0.24
CPNE3-205ENST00000522240 CCT4P50991 539 aaKnown RBP16.54■□□□□ 0.24
CPNE3-205ENST00000522240 SLC27A3Q5K4L6 730 aa16.54■□□□□ 0.24
CPNE3-205ENST00000522240 KSR2Q6VAB6 950 aa16.54■□□□□ 0.24
CPNE3-205ENST00000522240 ITPRIPQ8IWB1 547 aa16.54■□□□□ 0.24
CPNE3-205ENST00000522240 CHMP4BQ9H444 224 aaKnown RBP16.54■□□□□ 0.24
CPNE3-205ENST00000522240 ZBTB1Q9Y2K1 713 aa16.54■□□□□ 0.24
CPNE3-205ENST00000522240 PLSCR1O15162 318 aa16.53■□□□□ 0.24
CPNE3-205ENST00000522240 RC3H1Q5TC82 1133 aaKnown RBP16.53■□□□□ 0.24
CPNE3-205ENST00000522240 COPS6Q7L5N1 327 aa16.53■□□□□ 0.24
CPNE3-205ENST00000522240 LINC00116Q8NCU8 138 aa16.53■□□□□ 0.24
CPNE3-205ENST00000522240 DNAAF4Q8WXU2 420 aa16.53■□□□□ 0.24
CPNE3-205ENST00000522240 BCORQ6W2J9 1755 aa16.53■□□□□ 0.24
CPNE3-205ENST00000522240 PI4KAP2A4QPH2 592 aa16.52■□□□□ 0.24
CPNE3-205ENST00000522240 F6X3S4 739 aa16.52■□□□□ 0.24
CPNE3-205ENST00000522240 PIP4K2AP48426 406 aaPredicted RBP16.52■□□□□ 0.24
CPNE3-205ENST00000522240 INTS5Q6P9B9 1019 aaKnown RBP16.52■□□□□ 0.24
CPNE3-205ENST00000522240 PI4KAP1Q8N8J0 262 aa16.52■□□□□ 0.24
CPNE3-205ENST00000522240 SCN7AQ01118 1682 aa16.52■□□□□ 0.23
CPNE3-205ENST00000522240 AIMP1Q12904 312 aaKnown RBP16.51■□□□□ 0.23
CPNE3-205ENST00000522240 PLBD2Q8NHP8 589 aa16.51■□□□□ 0.23
CPNE3-205ENST00000522240 CAMKK2Q96RR4 588 aa16.51■□□□□ 0.23
CPNE3-205ENST00000522240 MAP3K2Q9Y2U5 619 aa16.51■□□□□ 0.23
CPNE3-205ENST00000522240 ANKRD36CQ5JPF3 1778 aa16.51■□□□□ 0.23
CPNE3-205ENST00000522240 EIF5P55010 431 aaKnown RBP16.5■□□□□ 0.23
CPNE3-205ENST00000522240 KIF6Q6ZMV9 814 aa16.5■□□□□ 0.23
CPNE3-205ENST00000522240 ANKRD13DQ6ZTN6 518 aa16.5■□□□□ 0.23
CPNE3-205ENST00000522240 RIC3Q7Z5B4 369 aa16.5■□□□□ 0.23
CPNE3-205ENST00000522240 PPP4R2Q9NY27 417 aa16.5■□□□□ 0.23
CPNE3-205ENST00000522240 COL15A1P39059 1388 aa16.5■□□□□ 0.23
CPNE3-205ENST00000522240 DSG3P32926 999 aa16.49■□□□□ 0.23
CPNE3-205ENST00000522240 R3HDM1Q15032 1099 aaKnown RBP16.49■□□□□ 0.23
CPNE3-205ENST00000522240 BEND3Q5T5X7 828 aa16.49■□□□□ 0.23
CPNE3-205ENST00000522240 SLC4A10Q6U841 1118 aa16.49■□□□□ 0.23
CPNE3-205ENST00000522240 METTL22Q9BUU2 404 aaPredicted RBP16.49■□□□□ 0.23
CPNE3-205ENST00000522240 SRCIN1Q9C0H9 1055 aa16.49■□□□□ 0.23
CPNE3-205ENST00000522240 AFDNP55196 1824 aaKnown RBP16.49■□□□□ 0.23
CPNE3-205ENST00000522240 MAP3K15Q6ZN16 1313 aa16.48■□□□□ 0.23
CPNE3-205ENST00000522240 UBR3Q6ZT12 1888 aa16.48■□□□□ 0.23
CPNE3-205ENST00000522240 ALDH1L1O75891 902 aa16.48■□□□□ 0.23
CPNE3-205ENST00000522240 APBA3O96018 575 aa16.48■□□□□ 0.23
CPNE3-205ENST00000522240 EZH2Q15910 746 aaKnown RBP16.48■□□□□ 0.23
CPNE3-205ENST00000522240 TTLL7Q6ZT98 887 aa16.48■□□□□ 0.23
CPNE3-205ENST00000522240 NPM2Q86SE8 214 aaKnown RBP16.48■□□□□ 0.23
CPNE3-205ENST00000522240 LINS1Q8NG48 757 aa16.48■□□□□ 0.23
CPNE3-205ENST00000522240 C4AP0C0L4 1744 aa16.48■□□□□ 0.23
CPNE3-205ENST00000522240 A0A087WZG4 1122 aa16.47■□□□□ 0.23
CPNE3-205ENST00000522240 ZBTB7BO15156 539 aaPredicted RBP16.47■□□□□ 0.23
CPNE3-205ENST00000522240 RGL2O15211 777 aa16.47■□□□□ 0.23
CPNE3-205ENST00000522240 NEXNQ0ZGT2 675 aa16.47■□□□□ 0.23
CPNE3-205ENST00000522240 TXNRD1Q16881 649 aa16.47■□□□□ 0.23
CPNE3-205ENST00000522240 LRRC4BQ9NT99 713 aa16.47■□□□□ 0.23
CPNE3-205ENST00000522240 ERVV-1B6SEH8 477 aa16.46■□□□□ 0.23
CPNE3-205ENST00000522240 RPS6KA4O75676 772 aa16.46■□□□□ 0.23
CPNE3-205ENST00000522240 ZBTB40Q9NUA8 1239 aa16.46■□□□□ 0.23
CPNE3-205ENST00000522240 ZNF330Q9Y3S2 320 aaPredicted RBP16.46■□□□□ 0.23
CPNE3-205ENST00000522240 KCNQ4P56696 695 aa16.45■□□□□ 0.22
CPNE3-205ENST00000522240 DZIP3Q86Y13 1208 aaKnown RBP16.45■□□□□ 0.22
CPNE3-205ENST00000522240 IFNLR1Q8IU57 520 aaPredicted RBP16.45■□□□□ 0.22
CPNE3-205ENST00000522240 NUP98P52948 1817 aa16.45■□□□□ 0.22
CPNE3-205ENST00000522240 GNAI3P08754 354 aa16.44■□□□□ 0.22
CPNE3-205ENST00000522240 HSP90AB3PQ58FF7 597 aa16.44■□□□□ 0.22
CPNE3-205ENST00000522240 GIGYF2Q6Y7W6 1299 aaKnown RBP16.44■□□□□ 0.22
CPNE3-205ENST00000522240 AK7Q96M32 723 aa16.44■□□□□ 0.22
CPNE3-205ENST00000522240 MYD88Q99836 296 aa16.44■□□□□ 0.22
CPNE3-205ENST00000522240 ZBTB3Q9H5J0 574 aa16.44■□□□□ 0.22
CPNE3-205ENST00000522240 RTCBQ9Y3I0 505 aaKnown RBP16.44■□□□□ 0.22
CPNE3-205ENST00000522240 NEURL1BA8MQ27 555 aa16.43■□□□□ 0.22
CPNE3-205ENST00000522240 GNPATO15228 680 aa16.43■□□□□ 0.22
CPNE3-205ENST00000522240 IGKV5-2P06315 115 aa16.43■□□□□ 0.22
CPNE3-205ENST00000522240 MEIS3Q99687 375 aa16.43■□□□□ 0.22
CPNE3-205ENST00000522240 QSER1Q2KHR3 1735 aa16.42■□□□□ 0.22
CPNE3-205ENST00000522240 CAMTA2O94983 1202 aa16.42■□□□□ 0.22
CPNE3-205ENST00000522240 TUBGCP6Q96RT7 1819 aa16.42■□□□□ 0.22
CPNE3-205ENST00000522240 UTYO14607 1347 aa16.42■□□□□ 0.22
CPNE3-205ENST00000522240 SSFA2P28290 1259 aa16.41■□□□□ 0.22
CPNE3-205ENST00000522240 TRIM28Q13263 835 aaKnown RBP16.41■□□□□ 0.22
CPNE3-205ENST00000522240 TCIRG1Q13488 830 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms