RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 ATP2B2Q01814 1243 aa13.74□□□□□ -0.21
SYNPO-204ENST00000519664 RAB3GAP1Q15042 981 aa13.74□□□□□ -0.21
SYNPO-204ENST00000519664 LMBR1LQ6UX01 489 aa13.74□□□□□ -0.21
SYNPO-204ENST00000519664 IFNL2Q8IZJ0 200 aa13.74□□□□□ -0.21
SYNPO-204ENST00000519664 TRMT112Q9UI30 125 aaKnown RBP13.74□□□□□ -0.21
SYNPO-204ENST00000519664 GRM8O00222 908 aa13.74□□□□□ -0.21
SYNPO-204ENST00000519664 NAP1L1P55209 391 aaKnown RBP13.74□□□□□ -0.21
SYNPO-204ENST00000519664 CCDC112Q8NEF3 446 aa13.74□□□□□ -0.21
SYNPO-204ENST00000519664 CCDC47Q96A33 483 aaKnown RBP13.74□□□□□ -0.21
SYNPO-204ENST00000519664 TRIM34Q9BYJ4 488 aa13.74□□□□□ -0.21
SYNPO-204ENST00000519664 ADCY5O95622 1261 aa13.74□□□□□ -0.21
SYNPO-204ENST00000519664 DNM1Q05193 864 aaKnown RBP13.74□□□□□ -0.21
SYNPO-204ENST00000519664 LGR6Q9HBX8 967 aa13.74□□□□□ -0.21
SYNPO-204ENST00000519664 ABCC1P33527 1531 aa13.74□□□□□ -0.21
SYNPO-204ENST00000519664 ADAMTS2O95450 1211 aa13.73□□□□□ -0.21
SYNPO-204ENST00000519664 LDHAL6AQ6ZMR3 332 aa13.73□□□□□ -0.21
SYNPO-204ENST00000519664 UBAC1Q9BSL1 405 aa13.73□□□□□ -0.21
SYNPO-204ENST00000519664 CHMLP26374 656 aa13.73□□□□□ -0.21
SYNPO-204ENST00000519664 CEP170Q5SW79 1584 aa13.73□□□□□ -0.21
SYNPO-204ENST00000519664 CHST3Q7LGC8 479 aa13.73□□□□□ -0.21
SYNPO-204ENST00000519664 C8orf76Q96K31 380 aa13.73□□□□□ -0.21
SYNPO-204ENST00000519664 NEK1Q96PY6 1258 aa13.73□□□□□ -0.21
SYNPO-204ENST00000519664 CHL1O00533 1208 aa13.72□□□□□ -0.21
SYNPO-204ENST00000519664 TRMT1Q9NXH9 659 aaKnown RBP13.72□□□□□ -0.21
SYNPO-204ENST00000519664 ABCC2Q92887 1545 aa13.72□□□□□ -0.21
SYNPO-204ENST00000519664 PBRM1Q86U86 1689 aa13.72□□□□□ -0.21
SYNPO-204ENST00000519664 CHAMP1Q96JM3 812 aa13.72□□□□□ -0.21
SYNPO-204ENST00000519664 AK2P54819 239 aa13.72□□□□□ -0.21
SYNPO-204ENST00000519664 KSR2Q6VAB6 950 aa13.72□□□□□ -0.21
SYNPO-204ENST00000519664 FLT4P35916 1363 aa13.72□□□□□ -0.21
SYNPO-204ENST00000519664 TTC21AQ8NDW8 1320 aa13.71□□□□□ -0.21
SYNPO-204ENST00000519664 ZSCAN22P10073 491 aaPredicted RBP13.71□□□□□ -0.21
SYNPO-204ENST00000519664 PIP4K2BP78356 416 aa13.71□□□□□ -0.21
SYNPO-204ENST00000519664 MEX3CQ5U5Q3 659 aaKnown RBP13.71□□□□□ -0.21
SYNPO-204ENST00000519664 SNRPA1P09661 255 aaKnown RBP13.71□□□□□ -0.21
SYNPO-204ENST00000519664 NBPF7P0C2Y1 421 aaPredicted RBP13.71□□□□□ -0.21
SYNPO-204ENST00000519664 IKQ13123 557 aaPredicted RBP13.71□□□□□ -0.21
SYNPO-204ENST00000519664 CFAP100Q494V2 611 aa13.71□□□□□ -0.21
SYNPO-204ENST00000519664 GNL3LQ9NVN8 582 aaKnown RBP13.71□□□□□ -0.21
SYNPO-204ENST00000519664 GOLGA8BA8MQT2 603 aa13.71□□□□□ -0.21
SYNPO-204ENST00000519664 ZNF213O14771 459 aa13.71□□□□□ -0.21
SYNPO-204ENST00000519664 GCP02774 474 aa13.71□□□□□ -0.21
SYNPO-204ENST00000519664 HOXC9P31274 260 aa13.71□□□□□ -0.21
SYNPO-204ENST00000519664 C16orf45Q96MC5 204 aaPredicted RBP13.71□□□□□ -0.21
SYNPO-204ENST00000519664 KLHL10Q6JEL2 608 aa13.71□□□□□ -0.22
SYNPO-204ENST00000519664 ZSCAN25Q6NSZ9 544 aa13.71□□□□□ -0.22
SYNPO-204ENST00000519664 NAPBQ9H115 298 aa13.71□□□□□ -0.22
SYNPO-204ENST00000519664 IQSEC3Q9UPP2 1182 aaPredicted RBP13.71□□□□□ -0.22
SYNPO-204ENST00000519664 ZMYM3Q14202 1370 aa13.7□□□□□ -0.22
SYNPO-204ENST00000519664 GCC2Q8IWJ2 1684 aa13.7□□□□□ -0.22
SYNPO-204ENST00000519664 RBM25P49756 843 aaKnown RBP13.7□□□□□ -0.22
SYNPO-204ENST00000519664 ZNF165P49910 485 aa13.7□□□□□ -0.22
SYNPO-204ENST00000519664 HSP90AB3PQ58FF7 597 aa13.7□□□□□ -0.22
SYNPO-204ENST00000519664 FAM173BQ6P4H8 233 aa13.7□□□□□ -0.22
SYNPO-204ENST00000519664 MICU3Q86XE3 530 aa13.7□□□□□ -0.22
SYNPO-204ENST00000519664 NDUFB9Q9Y6M9 179 aa13.7□□□□□ -0.22
SYNPO-204ENST00000519664 ZNF521Q96K83 1311 aa13.7□□□□□ -0.22
SYNPO-204ENST00000519664 TTC12Q9H892 705 aaPredicted RBP13.7□□□□□ -0.22
SYNPO-204ENST00000519664 NMIQ13287 307 aaPredicted RBP13.7□□□□□ -0.22
SYNPO-204ENST00000519664 TRMT2AQ8IZ69 625 aaKnown RBP13.7□□□□□ -0.22
SYNPO-204ENST00000519664 FSIP1Q8NA03 581 aa13.7□□□□□ -0.22
SYNPO-204ENST00000519664 UGGT1Q9NYU2 1555 aa13.7□□□□□ -0.22
SYNPO-204ENST00000519664 UBE2HP62256 183 aa13.69□□□□□ -0.22
SYNPO-204ENST00000519664 SLC4A8Q2Y0W8 1093 aa13.69□□□□□ -0.22
SYNPO-204ENST00000519664 LRSAM1Q6UWE0 723 aa13.69□□□□□ -0.22
SYNPO-204ENST00000519664 AKAP2Q9Y2D5 859 aa13.69□□□□□ -0.22
SYNPO-204ENST00000519664 USP16Q9Y5T5 823 aa13.69□□□□□ -0.22
SYNPO-204ENST00000519664 SKIDA1Q1XH10 827 aa13.69□□□□□ -0.22
SYNPO-204ENST00000519664 MAST1Q9Y2H9 1570 aa13.69□□□□□ -0.22
SYNPO-204ENST00000519664 CWC25Q9NXE8 425 aaPredicted RBP13.69□□□□□ -0.22
SYNPO-204ENST00000519664 LINS1Q8NG48 757 aa13.69□□□□□ -0.22
SYNPO-204ENST00000519664 ORAI2Q96SN7 254 aa13.69□□□□□ -0.22
SYNPO-204ENST00000519664 ZHX1Q9UKY1 873 aaPredicted RBP13.69□□□□□ -0.22
SYNPO-204ENST00000519664 SOS1Q07889 1333 aaPredicted RBP13.68□□□□□ -0.22
SYNPO-204ENST00000519664 IGHMBP2P38935 993 aaKnown RBP13.68□□□□□ -0.22
SYNPO-204ENST00000519664 AKAP4Q5JQC9 854 aa13.68□□□□□ -0.22
SYNPO-204ENST00000519664 ARGLU1Q9NWB6 273 aaPredicted RBP13.68□□□□□ -0.22
SYNPO-204ENST00000519664 TARBP1Q13395 1621 aaKnown RBP13.68□□□□□ -0.22
SYNPO-204ENST00000519664 PRDM10Q9NQV6 1147 aa13.68□□□□□ -0.22
SYNPO-204ENST00000519664 ATP7AQ04656 1500 aa13.68□□□□□ -0.22
SYNPO-204ENST00000519664 PLA2R1Q13018 1463 aa13.68□□□□□ -0.22
SYNPO-204ENST00000519664 CEP89Q96ST8 783 aa13.68□□□□□ -0.22
SYNPO-204ENST00000519664 DACT1Q9NYF0 836 aa13.68□□□□□ -0.22
SYNPO-204ENST00000519664 ORC3Q9UBD5 711 aaPredicted RBP13.68□□□□□ -0.22
SYNPO-204ENST00000519664 CLIP2Q9UDT6 1046 aa13.68□□□□□ -0.22
SYNPO-204ENST00000519664 GPS2Q13227 327 aa13.68□□□□□ -0.22
SYNPO-204ENST00000519664 HSP90AA4PQ58FG1 418 aa13.68□□□□□ -0.22
SYNPO-204ENST00000519664 BBXQ8WY36 941 aaPredicted RBP13.68□□□□□ -0.22
SYNPO-204ENST00000519664 RANBP6O60518 1105 aaKnown RBP13.67□□□□□ -0.22
SYNPO-204ENST00000519664 CDKL5O76039 1030 aa13.67□□□□□ -0.22
SYNPO-204ENST00000519664 FILIP1LQ4L180 1135 aa13.67□□□□□ -0.22
SYNPO-204ENST00000519664 USP19O94966 1318 aa13.67□□□□□ -0.22
SYNPO-204ENST00000519664 GSPT1P15170 499 aaKnown RBP13.67□□□□□ -0.22
SYNPO-204ENST00000519664 IFIT3O14879 490 aaKnown RBP13.67□□□□□ -0.22
SYNPO-204ENST00000519664 BICC1Q9H694 974 aaKnown RBP13.67□□□□□ -0.22
SYNPO-204ENST00000519664 OFD1O75665 1012 aa13.66□□□□□ -0.22
SYNPO-204ENST00000519664 TIMM10P62072 90 aa13.66□□□□□ -0.22
SYNPO-204ENST00000519664 PKP1Q13835 747 aa13.66□□□□□ -0.22
SYNPO-204ENST00000519664 RRAGDQ9NQL2 400 aaPredicted RBP13.66□□□□□ -0.22
SYNPO-204ENST00000519664 ANAPC15P60006 121 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms