RNA–Protein interactions for RNA: ENST00000514421.1

CCL28-204, Transcript of C-C motif chemokine ligand 28, humanhuman

TSL 3

Gene CCL28, Length 577 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-204ENST00000514421 TSR2Q969E8 191 aaKnown RBP10.72□□□□□ -0.69
CCL28-204ENST00000514421 SETDB2Q96T68 719 aa10.72□□□□□ -0.69
CCL28-204ENST00000514421 MYH16Q9H6N6 1097 aa10.72□□□□□ -0.69
CCL28-204ENST00000514421 ZNF652Q9Y2D9 606 aa10.72□□□□□ -0.69
CCL28-204ENST00000514421 ZNF521Q96K83 1311 aa10.72□□□□□ -0.69
CCL28-204ENST00000514421 QSER1Q2KHR3 1735 aa10.72□□□□□ -0.69
CCL28-204ENST00000514421 UBR2Q8IWV8 1755 aa10.72□□□□□ -0.69
CCL28-204ENST00000514421 UBR3Q6ZT12 1888 aa10.72□□□□□ -0.69
CCL28-204ENST00000514421 POLRMTO00411 1230 aaKnown RBP10.71□□□□□ -0.69
CCL28-204ENST00000514421 SERPINB2P05120 415 aa10.71□□□□□ -0.69
CCL28-204ENST00000514421 TJP1Q07157 1748 aa10.71□□□□□ -0.69
CCL28-204ENST00000514421 DDR1Q08345 913 aa10.71□□□□□ -0.69
CCL28-204ENST00000514421 PROSER3Q2NL68 480 aa10.71□□□□□ -0.69
CCL28-204ENST00000514421 TBC1D9BQ66K14 1250 aa10.71□□□□□ -0.69
CCL28-204ENST00000514421 KIF6Q6ZMV9 814 aa10.71□□□□□ -0.69
CCL28-204ENST00000514421 TTLL7Q6ZT98 887 aa10.71□□□□□ -0.69
CCL28-204ENST00000514421 COPS6Q7L5N1 327 aa10.71□□□□□ -0.69
CCL28-204ENST00000514421 LRP10Q7Z4F1 713 aa10.71□□□□□ -0.69
CCL28-204ENST00000514421 HYPKQ9NX55 129 aa10.71□□□□□ -0.69
CCL28-204ENST00000514421 COL5A3P25940 1745 aaPredicted RBP10.7□□□□□ -0.7
CCL28-204ENST00000514421 LRP5O75197 1615 aa10.7□□□□□ -0.7
CCL28-204ENST00000514421 CICQ96RK0 1608 aaPredicted RBP10.7□□□□□ -0.7
CCL28-204ENST00000514421 MAP3K15Q6ZN16 1313 aa10.7□□□□□ -0.7
CCL28-204ENST00000514421 ANXA1P04083 346 aa10.7□□□□□ -0.7
CCL28-204ENST00000514421 NEFLP07196 543 aa10.7□□□□□ -0.7
CCL28-204ENST00000514421 TGFB2P61812 414 aa10.7□□□□□ -0.7
CCL28-204ENST00000514421 HLFQ16534 295 aa10.7□□□□□ -0.7
CCL28-204ENST00000514421 TWISTNBQ3B726 338 aaPredicted RBP10.7□□□□□ -0.7
CCL28-204ENST00000514421 CCDC30Q5VVM6 783 aa10.7□□□□□ -0.7
CCL28-204ENST00000514421 TSPYL6Q8N831 410 aa10.7□□□□□ -0.7
CCL28-204ENST00000514421 CHPF2Q9P2E5 772 aa10.7□□□□□ -0.7
CCL28-204ENST00000514421 VAMP4O75379 141 aa10.69□□□□□ -0.7
CCL28-204ENST00000514421 EXOSC9Q06265 439 aaKnown RBP10.69□□□□□ -0.7
CCL28-204ENST00000514421 AIMP1Q12904 312 aaKnown RBP10.69□□□□□ -0.7
CCL28-204ENST00000514421 XAGE3Q8WTP9 111 aa10.69□□□□□ -0.7
CCL28-204ENST00000514421 NIP7Q9Y221 180 aaKnown RBP eCLIP10.69□□□□□ -0.7
CCL28-204ENST00000514421 TUBGCP6Q96RT7 1819 aa10.68□□□□□ -0.7
CCL28-204ENST00000514421 FANCIQ9NVI1 1328 aa10.68□□□□□ -0.7
CCL28-204ENST00000514421 E9PSI1 815 aa10.68□□□□□ -0.7
CCL28-204ENST00000514421 TPTE2Q6XPS3 522 aa10.68□□□□□ -0.7
CCL28-204ENST00000514421 GIGYF2Q6Y7W6 1299 aaKnown RBP10.68□□□□□ -0.7
CCL28-204ENST00000514421 ANKRD13DQ6ZTN6 518 aa10.68□□□□□ -0.7
CCL28-204ENST00000514421 NLGN2Q8NFZ4 835 aa10.68□□□□□ -0.7
CCL28-204ENST00000514421 ZBTB3Q9H5J0 574 aa10.68□□□□□ -0.7
CCL28-204ENST00000514421 KDM3BQ7LBC6 1761 aa10.67□□□□□ -0.7
CCL28-204ENST00000514421 SLFN5Q08AF3 891 aa10.67□□□□□ -0.7
CCL28-204ENST00000514421 HSP90AB3PQ58FF7 597 aa10.67□□□□□ -0.7
CCL28-204ENST00000514421 ZNF34Q8IZ26 560 aa10.67□□□□□ -0.7
CCL28-204ENST00000514421 STK31Q9BXU1 1019 aa10.67□□□□□ -0.7
CCL28-204ENST00000514421 A0A0G2JLW4 131 aa10.66□□□□□ -0.7
CCL28-204ENST00000514421 NPHP1O15259 732 aa10.66□□□□□ -0.7
CCL28-204ENST00000514421 SLC4A2P04920 1241 aa10.66□□□□□ -0.7
CCL28-204ENST00000514421 DPEP1P16444 411 aa10.66□□□□□ -0.7
CCL28-204ENST00000514421 TCIRG1Q13488 830 aa10.66□□□□□ -0.7
CCL28-204ENST00000514421 GPR162Q16538 588 aa10.66□□□□□ -0.7
CCL28-204ENST00000514421 PRR5LQ6MZQ0 368 aa10.66□□□□□ -0.7
CCL28-204ENST00000514421 NBPF5PQ86XG9 351 aaPredicted RBP10.66□□□□□ -0.7
CCL28-204ENST00000514421 TRMT2AQ8IZ69 625 aaKnown RBP10.66□□□□□ -0.7
CCL28-204ENST00000514421 PLBD2Q8NHP8 589 aa10.66□□□□□ -0.7
CCL28-204ENST00000514421 BRIP1Q9BX63 1249 aa10.66□□□□□ -0.7
CCL28-204ENST00000514421 PHAXQ9H814 394 aaKnown RBP10.66□□□□□ -0.7
CCL28-204ENST00000514421 PDZRN3Q9UPQ7 1066 aa10.66□□□□□ -0.7
CCL28-204ENST00000514421 TCERG1O14776 1098 aaKnown RBP10.65□□□□□ -0.7
CCL28-204ENST00000514421 GTF2E1P29083 439 aaPredicted RBP10.65□□□□□ -0.7
CCL28-204ENST00000514421 PARP10Q53GL7 1025 aa10.65□□□□□ -0.7
CCL28-204ENST00000514421 CNBD1Q8NA66 436 aa10.65□□□□□ -0.7
CCL28-204ENST00000514421 CDCA7LQ96GN5 454 aa10.65□□□□□ -0.7
CCL28-204ENST00000514421 NYXQ9GZU5 481 aa10.65□□□□□ -0.7
CCL28-204ENST00000514421 CARMIL3Q8ND23 1372 aa10.65□□□□□ -0.71
CCL28-204ENST00000514421 FAM177BA6PVY3 158 aa10.64□□□□□ -0.71
CCL28-204ENST00000514421 H0YIN7 160 aa10.64□□□□□ -0.71
CCL28-204ENST00000514421 GRIN3BO60391 1043 aa10.64□□□□□ -0.71
CCL28-204ENST00000514421 NPM3O75607 178 aaKnown RBP10.64□□□□□ -0.71
CCL28-204ENST00000514421 DDX58O95786 925 aaKnown RBP10.64□□□□□ -0.71
CCL28-204ENST00000514421 KCNA3P22001 575 aa10.64□□□□□ -0.71
CCL28-204ENST00000514421 GPTP24298 496 aa10.64□□□□□ -0.71
CCL28-204ENST00000514421 PDE6BP35913 854 aa10.64□□□□□ -0.71
CCL28-204ENST00000514421 ST5P78524 1137 aa10.64□□□□□ -0.71
CCL28-204ENST00000514421 PPP1R42Q7Z4L9 355 aa10.64□□□□□ -0.71
CCL28-204ENST00000514421 RIC3Q7Z5B4 369 aa10.64□□□□□ -0.71
CCL28-204ENST00000514421 PELP1Q8IZL8 1130 aaKnown RBP10.64□□□□□ -0.71
CCL28-204ENST00000514421 PIM2Q9P1W9 311 aa10.64□□□□□ -0.71
CCL28-204ENST00000514421 COL24A1Q17RW2 1714 aa10.64□□□□□ -0.71
CCL28-204ENST00000514421 TRIM28Q13263 835 aaKnown RBP10.63□□□□□ -0.71
CCL28-204ENST00000514421 SUSD4Q5VX71 490 aa10.63□□□□□ -0.71
CCL28-204ENST00000514421 KSR2Q6VAB6 950 aa10.63□□□□□ -0.71
CCL28-204ENST00000514421 C2CD5Q86YS7 1000 aa10.63□□□□□ -0.71
CCL28-204ENST00000514421 CCDC24Q8N4L8 307 aa10.63□□□□□ -0.71
CCL28-204ENST00000514421 UTP14AQ9BVJ6 771 aaKnown RBP10.63□□□□□ -0.71
CCL28-204ENST00000514421 CHRNA5P30532 468 aa10.62□□□□□ -0.71
CCL28-204ENST00000514421 SLC10A5Q5PT55 438 aa10.62□□□□□ -0.71
CCL28-204ENST00000514421 G2E3Q7L622 706 aa10.62□□□□□ -0.71
CCL28-204ENST00000514421 NLRP10Q86W26 655 aa10.62□□□□□ -0.71
CCL28-204ENST00000514421 ZNF428Q96B54 188 aa10.62□□□□□ -0.71
CCL28-204ENST00000514421 ISCA1Q9BUE6 129 aa10.62□□□□□ -0.71
CCL28-204ENST00000514421 C10orf71Q711Q0 1435 aa10.61□□□□□ -0.71
CCL28-204ENST00000514421 KLRG2A4D1S0 409 aaPredicted RBP10.61□□□□□ -0.71
CCL28-204ENST00000514421 PI4KAP2A4QPH2 592 aa10.61□□□□□ -0.71
CCL28-204ENST00000514421 CT47B1P0C2W7 299 aaPredicted RBP10.61□□□□□ -0.71
CCL28-204ENST00000514421 FLIIQ13045 1269 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms