RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 DALRD3Q5D0E6 543 aaKnown RBP26.17■■□□□ 1.78
USP53-208ENST00000514305 FMNL2Q96PY5 1086 aa26.17■■□□□ 1.78
USP53-208ENST00000514305 IL16Q14005 1332 aa26.16■■□□□ 1.78
USP53-208ENST00000514305 MKRN4PQ13434 485 aaPredicted RBP26.16■■□□□ 1.78
USP53-208ENST00000514305 NFIXQ14938 502 aa26.16■■□□□ 1.78
USP53-208ENST00000514305 NPM2Q86SE8 214 aaKnown RBP26.15■■□□□ 1.78
USP53-208ENST00000514305 CFAP44Q96MT7 982 aa26.15■■□□□ 1.78
USP53-208ENST00000514305 THUMPD2Q9BTF0 503 aaKnown RBP26.15■■□□□ 1.78
USP53-208ENST00000514305 IFT57Q9NWB7 429 aa26.15■■□□□ 1.78
USP53-208ENST00000514305 CHRNA5P30532 468 aa26.14■■□□□ 1.78
USP53-208ENST00000514305 EIF5P55010 431 aaKnown RBP26.14■■□□□ 1.78
USP53-208ENST00000514305 TSPYL4Q9UJ04 414 aa26.14■■□□□ 1.78
USP53-208ENST00000514305 ZNF330Q9Y3S2 320 aaPredicted RBP26.14■■□□□ 1.78
USP53-208ENST00000514305 LAS1LQ9Y4W2 734 aaKnown RBP26.14■■□□□ 1.78
USP53-208ENST00000514305 SCN7AQ01118 1682 aa26.14■■□□□ 1.78
USP53-208ENST00000514305 BCL2L12Q9HB09 334 aa26.13■■□□□ 1.77
USP53-208ENST00000514305 SERPINB2P05120 415 aa26.12■■□□□ 1.77
USP53-208ENST00000514305 DLEC1Q9Y238 1755 aa26.12■■□□□ 1.77
USP53-208ENST00000514305 IL6STP40189 918 aaPredicted RBP26.1■■□□□ 1.77
USP53-208ENST00000514305 GOLGA2Q08379 1002 aa26.1■■□□□ 1.77
USP53-208ENST00000514305 MYH16Q9H6N6 1097 aa26.1■■□□□ 1.77
USP53-208ENST00000514305 CHL1O00533 1208 aa26.09■■□□□ 1.77
USP53-208ENST00000514305 BICDL1Q6ZP65 573 aa26.09■■□□□ 1.77
USP53-208ENST00000514305 C9orf131Q5VYM1 1079 aa26.07■■□□□ 1.76
USP53-208ENST00000514305 CHMP4AQ9BY43 222 aa26.07■■□□□ 1.76
USP53-208ENST00000514305 SBF1O95248 1867 aa26.06■■□□□ 1.76
USP53-208ENST00000514305 E9PSI1 815 aa26.06■■□□□ 1.76
USP53-208ENST00000514305 KIF3CO14782 793 aa26.06■■□□□ 1.76
USP53-208ENST00000514305 KCNQ3O43525 872 aa26.06■■□□□ 1.76
USP53-208ENST00000514305 TBC1D2BQ9UPU7 963 aa26.06■■□□□ 1.76
USP53-208ENST00000514305 BCORQ6W2J9 1755 aa26.05■■□□□ 1.76
USP53-208ENST00000514305 A1BGP04217 495 aa26.05■■□□□ 1.76
USP53-208ENST00000514305 ZNF853P0CG23 659 aa26.05■■□□□ 1.76
USP53-208ENST00000514305 TBC1D9BQ66K14 1250 aa26.05■■□□□ 1.76
USP53-208ENST00000514305 MIS18AQ9NYP9 233 aa26.05■■□□□ 1.76
USP53-208ENST00000514305 ZBED9Q6R2W3 1325 aa26.05■■□□□ 1.76
USP53-208ENST00000514305 ZNF521Q96K83 1311 aa26.05■■□□□ 1.76
USP53-208ENST00000514305 CARMIL3Q8ND23 1372 aa26.04■■□□□ 1.76
USP53-208ENST00000514305 H0YIN7 160 aa26.03■■□□□ 1.76
USP53-208ENST00000514305 C2CD5Q86YS7 1000 aa26.03■■□□□ 1.76
USP53-208ENST00000514305 RNF181Q9P0P0 153 aa26.03■■□□□ 1.76
USP53-208ENST00000514305 ANKRD31Q8N7Z5 1873 aa26.02■■□□□ 1.76
USP53-208ENST00000514305 SNRPA1P09661 255 aaKnown RBP26.02■■□□□ 1.76
USP53-208ENST00000514305 HSPA6P17066 643 aa26.02■■□□□ 1.76
USP53-208ENST00000514305 TTLL6Q8N841 843 aa26.02■■□□□ 1.76
USP53-208ENST00000514305 MBIPQ9NS73 344 aa26.02■■□□□ 1.76
USP53-208ENST00000514305 NPHP1O15259 732 aa26.01■■□□□ 1.75
USP53-208ENST00000514305 EIF4A1P60842 406 aaKnown RBP26.01■■□□□ 1.75
USP53-208ENST00000514305 CHRDL2Q6WN34 429 aa26.01■■□□□ 1.75
USP53-208ENST00000514305 DZIP3Q86Y13 1208 aaKnown RBP26.01■■□□□ 1.75
USP53-208ENST00000514305 USP16Q9Y5T5 823 aa26.01■■□□□ 1.75
USP53-208ENST00000514305 SETDB2Q96T68 719 aa26■■□□□ 1.75
USP53-208ENST00000514305 PDZRN3Q9UPQ7 1066 aa26■■□□□ 1.75
USP53-208ENST00000514305 CAMTA2O94983 1202 aa25.99■■□□□ 1.75
USP53-208ENST00000514305 PDE6BP35913 854 aa25.99■■□□□ 1.75
USP53-208ENST00000514305 LAMB4A4D0S4 1761 aa25.98■■□□□ 1.75
USP53-208ENST00000514305 KDM2BQ8NHM5 1336 aa25.98■■□□□ 1.75
USP53-208ENST00000514305 TOMM70O94826 608 aa25.98■■□□□ 1.75
USP53-208ENST00000514305 BRIP1Q9BX63 1249 aa25.98■■□□□ 1.75
USP53-208ENST00000514305 NMRK2Q9NPI5 230 aa25.98■■□□□ 1.75
USP53-208ENST00000514305 CEP350Q5VT06 3117 aa25.98■■□□□ 1.75
USP53-208ENST00000514305 PRAMEF22A3QJZ6 481 aa25.97■■□□□ 1.75
USP53-208ENST00000514305 HOXB7P09629 217 aa25.97■■□□□ 1.75
USP53-208ENST00000514305 SLFN5Q08AF3 891 aa25.97■■□□□ 1.75
USP53-208ENST00000514305 PRR5LQ6MZQ0 368 aa25.97■■□□□ 1.75
USP53-208ENST00000514305 REM2Q8IYK8 340 aaPredicted RBP25.97■■□□□ 1.75
USP53-208ENST00000514305 CCDC88AQ3V6T2 1871 aa25.97■■□□□ 1.75
USP53-208ENST00000514305 TNRC6CQ9HCJ0 1690 aaKnown RBP25.96■■□□□ 1.75
USP53-208ENST00000514305 PIP4K2AP48426 406 aaPredicted RBP25.96■■□□□ 1.75
USP53-208ENST00000514305 RASSF7Q02833 373 aa25.96■■□□□ 1.75
USP53-208ENST00000514305 C16orf71Q8IYS4 520 aaPredicted RBP25.96■■□□□ 1.75
USP53-208ENST00000514305 CNBD1Q8NA66 436 aa25.96■■□□□ 1.75
USP53-208ENST00000514305 ZNF652Q9Y2D9 606 aa25.96■■□□□ 1.75
USP53-208ENST00000514305 COL11A2P13942 1736 aaPredicted RBP25.96■■□□□ 1.75
USP53-208ENST00000514305 ST5P78524 1137 aa25.95■■□□□ 1.74
USP53-208ENST00000514305 ZNF622Q969S3 477 aaKnown RBP eCLIP25.95■■□□□ 1.74
USP53-208ENST00000514305 KDM3BQ7LBC6 1761 aa25.95■■□□□ 1.74
USP53-208ENST00000514305 CACNA1SQ13698 1873 aa25.94■■□□□ 1.74
USP53-208ENST00000514305 TSR2Q969E8 191 aaKnown RBP25.94■■□□□ 1.74
USP53-208ENST00000514305 FANCIQ9NVI1 1328 aa25.93■■□□□ 1.74
USP53-208ENST00000514305 ZC3H4Q9UPT8 1303 aaKnown RBP25.93■■□□□ 1.74
USP53-208ENST00000514305 LMNB1P20700 586 aa25.93■■□□□ 1.74
USP53-208ENST00000514305 CLEC4GQ6UXB4 293 aa25.93■■□□□ 1.74
USP53-208ENST00000514305 CCDC24Q8N4L8 307 aa25.93■■□□□ 1.74
USP53-208ENST00000514305 YTHDC1Q96MU7 727 aaKnown RBP25.93■■□□□ 1.74
USP53-208ENST00000514305 TIAM2Q8IVF5 1701 aa25.93■■□□□ 1.74
USP53-208ENST00000514305 DUSP27Q5VZP5 1158 aa25.9■■□□□ 1.74
USP53-208ENST00000514305 NBPF5PQ86XG9 351 aaPredicted RBP25.9■■□□□ 1.74
USP53-208ENST00000514305 ARFGEF2Q9Y6D5 1785 aa25.89■■□□□ 1.73
USP53-208ENST00000514305 FER1L6Q2WGJ9 1857 aa25.88■■□□□ 1.73
USP53-208ENST00000514305 NBPF26B4DH59 902 aa25.88■■□□□ 1.73
USP53-208ENST00000514305 RGL2O15211 777 aa25.88■■□□□ 1.73
USP53-208ENST00000514305 CT47B1P0C2W7 299 aaPredicted RBP25.88■■□□□ 1.73
USP53-208ENST00000514305 TWISTNBQ3B726 338 aaPredicted RBP25.88■■□□□ 1.73
USP53-208ENST00000514305 NBPF10Q6P3W6 841 aaKnown RBP25.88■■□□□ 1.73
USP53-208ENST00000514305 TRMT2AQ8IZ69 625 aaKnown RBP25.88■■□□□ 1.73
USP53-208ENST00000514305 NBPF15Q8N660 670 aa25.88■■□□□ 1.73
USP53-208ENST00000514305 RBM46Q8TBY0 533 aaKnown RBP25.88■■□□□ 1.73
USP53-208ENST00000514305 CNKSR1Q969H4 720 aa25.88■■□□□ 1.73
USP53-208ENST00000514305 ERBB4Q15303 1308 aa25.88■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms