RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 FKBP5Q13451 457 aaPredicted RBP10.04□□□□□ -0.8
LIMCH1-219ENST00000514096 NBPF10Q6P3W6 841 aaKnown RBP10.04□□□□□ -0.8
LIMCH1-219ENST00000514096 NBPF15Q8N660 670 aa10.04□□□□□ -0.8
LIMCH1-219ENST00000514096 SLC4A2P04920 1241 aa10.03□□□□□ -0.8
LIMCH1-219ENST00000514096 HSP90AA1P07900 732 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-219ENST00000514096 CDK11BP21127 795 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-219ENST00000514096 NLGN1Q8N2Q7 840 aa10.03□□□□□ -0.8
LIMCH1-219ENST00000514096 STK31Q9BXU1 1019 aa10.03□□□□□ -0.8
LIMCH1-219ENST00000514096 EIF4A1P60842 406 aaKnown RBP10.03□□□□□ -0.8
LIMCH1-219ENST00000514096 FAM89AQ96GI7 184 aa10.03□□□□□ -0.8
LIMCH1-219ENST00000514096 GIGYF1O75420 1035 aaPredicted RBP10.02□□□□□ -0.8
LIMCH1-219ENST00000514096 SAMD1Q6SPF0 538 aaPredicted RBP10.02□□□□□ -0.8
LIMCH1-219ENST00000514096 CNBD1Q8NA66 436 aa10.02□□□□□ -0.8
LIMCH1-219ENST00000514096 KDRP35968 1356 aa10.02□□□□□ -0.81
LIMCH1-219ENST00000514096 C21orf2O43822 256 aa10.02□□□□□ -0.81
LIMCH1-219ENST00000514096 PLIN1O60240 522 aa10.02□□□□□ -0.81
LIMCH1-219ENST00000514096 DDR1Q08345 913 aa10.02□□□□□ -0.81
LIMCH1-219ENST00000514096 WWC1Q8IX03 1113 aa10.02□□□□□ -0.81
LIMCH1-219ENST00000514096 PRDM10Q9NQV6 1147 aa10.02□□□□□ -0.81
LIMCH1-219ENST00000514096 TRMT112Q9UI30 125 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-219ENST00000514096 MYD88Q99836 296 aa10.02□□□□□ -0.81
LIMCH1-219ENST00000514096 DOT1LQ8TEK3 1739 aa10.01□□□□□ -0.81
LIMCH1-219ENST00000514096 TWISTNBQ3B726 338 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-219ENST00000514096 FBXW7Q969H0 707 aa10.01□□□□□ -0.81
LIMCH1-219ENST00000514096 NOP58Q9Y2X3 529 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-219ENST00000514096 SSFA2P28290 1259 aa10.01□□□□□ -0.81
LIMCH1-219ENST00000514096 PLCB2Q00722 1185 aa10.01□□□□□ -0.81
LIMCH1-219ENST00000514096 C2CD5Q86YS7 1000 aa10.01□□□□□ -0.81
LIMCH1-219ENST00000514096 COL15A1P39059 1388 aa10.01□□□□□ -0.81
LIMCH1-219ENST00000514096 HEG1Q9ULI3 1381 aa10.01□□□□□ -0.81
LIMCH1-219ENST00000514096 THSD7AQ9UPZ6 1657 aa10.01□□□□□ -0.81
LIMCH1-219ENST00000514096 G2E3Q7L622 706 aa10□□□□□ -0.81
LIMCH1-219ENST00000514096 FLAD1Q8NFF5 587 aa10□□□□□ -0.81
LIMCH1-219ENST00000514096 YBX3P16989 372 aaKnown RBP eCLIP10□□□□□ -0.81
LIMCH1-219ENST00000514096 GNAI1P63096 354 aa10□□□□□ -0.81
LIMCH1-219ENST00000514096 GOLGA2Q08379 1002 aa10□□□□□ -0.81
LIMCH1-219ENST00000514096 GRM1Q13255 1194 aa10□□□□□ -0.81
LIMCH1-219ENST00000514096 CWF19L2Q2TBE0 894 aaKnown RBP10□□□□□ -0.81
LIMCH1-219ENST00000514096 BTAF1O14981 1849 aa10□□□□□ -0.81
LIMCH1-219ENST00000514096 TNKS1BP1Q9C0C2 1729 aaKnown RBP10□□□□□ -0.81
LIMCH1-219ENST00000514096 NPC1L1Q9UHC9 1359 aa9.99□□□□□ -0.81
LIMCH1-219ENST00000514096 PI4KAP2A4QPH2 592 aa9.98□□□□□ -0.81
LIMCH1-219ENST00000514096 RASSF7Q02833 373 aa9.98□□□□□ -0.81
LIMCH1-219ENST00000514096 PI4KAP1Q8N8J0 262 aa9.98□□□□□ -0.81
LIMCH1-219ENST00000514096 ZFP91Q96JP5 570 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-219ENST00000514096 H0YIN7 160 aa9.98□□□□□ -0.81
LIMCH1-219ENST00000514096 USP42Q9H9J4 1324 aaKnown RBP9.98□□□□□ -0.81
LIMCH1-219ENST00000514096 PARP4Q9UKK3 1724 aaKnown RBP9.98□□□□□ -0.81
LIMCH1-219ENST00000514096 ERFEQ4G0M1 354 aa9.98□□□□□ -0.81
LIMCH1-219ENST00000514096 GPR101Q96P66 508 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-219ENST00000514096 TEX13AQ9BXU3 409 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-219ENST00000514096 NARFQ9UHQ1 456 aa9.98□□□□□ -0.81
LIMCH1-219ENST00000514096 APBB1O00213 710 aa9.97□□□□□ -0.81
LIMCH1-219ENST00000514096 ZNF652Q9Y2D9 606 aa9.97□□□□□ -0.81
LIMCH1-219ENST00000514096 VGLL3A8MV65 326 aa9.97□□□□□ -0.81
LIMCH1-219ENST00000514096 EIF5P55010 431 aaKnown RBP9.97□□□□□ -0.81
LIMCH1-219ENST00000514096 ANKRD13DQ6ZTN6 518 aa9.97□□□□□ -0.81
LIMCH1-219ENST00000514096 SMC4Q9NTJ3 1288 aa9.97□□□□□ -0.81
LIMCH1-219ENST00000514096 PATL2C9JE40 543 aaKnown RBP9.96□□□□□ -0.81
LIMCH1-219ENST00000514096 RIMBP2O15034 1052 aa9.96□□□□□ -0.81
LIMCH1-219ENST00000514096 ST5P78524 1137 aa9.96□□□□□ -0.81
LIMCH1-219ENST00000514096 TPTE2Q6XPS3 522 aa9.96□□□□□ -0.81
LIMCH1-219ENST00000514096 SLC16A10Q8TF71 515 aa9.96□□□□□ -0.81
LIMCH1-219ENST00000514096 RPGRQ92834 1020 aaKnown RBP9.96□□□□□ -0.81
LIMCH1-219ENST00000514096 BCL2L12Q9HB09 334 aa9.96□□□□□ -0.81
LIMCH1-219ENST00000514096 ZBTB47Q9UFB7 747 aaPredicted RBP9.96□□□□□ -0.81
LIMCH1-219ENST00000514096 JAG2Q9Y219 1238 aa9.96□□□□□ -0.81
LIMCH1-219ENST00000514096 ABCC6O95255 1503 aa9.96□□□□□ -0.81
LIMCH1-219ENST00000514096 G3V3G9 751 aa9.96□□□□□ -0.81
LIMCH1-219ENST00000514096 DCAF8Q5TAQ9 597 aa9.96□□□□□ -0.81
LIMCH1-219ENST00000514096 RNF181Q9P0P0 153 aa9.96□□□□□ -0.81
LIMCH1-219ENST00000514096 MAP3K2Q9Y2U5 619 aa9.96□□□□□ -0.81
LIMCH1-219ENST00000514096 SOS1Q07889 1333 aaPredicted RBP9.96□□□□□ -0.82
LIMCH1-219ENST00000514096 SUSD4Q5VX71 490 aa9.95□□□□□ -0.82
LIMCH1-219ENST00000514096 PRR5LQ6MZQ0 368 aa9.95□□□□□ -0.82
LIMCH1-219ENST00000514096 GJA3Q9Y6H8 435 aa9.95□□□□□ -0.82
LIMCH1-219ENST00000514096 FAM208AQ9UK61 1670 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-219ENST00000514096 FANCIQ9NVI1 1328 aa9.95□□□□□ -0.82
LIMCH1-219ENST00000514096 IL6STP40189 918 aaPredicted RBP9.95□□□□□ -0.82
LIMCH1-219ENST00000514096 UBE3BQ7Z3V4 1068 aa9.95□□□□□ -0.82
LIMCH1-219ENST00000514096 PIM2Q9P1W9 311 aa9.95□□□□□ -0.82
LIMCH1-219ENST00000514096 DALRD3Q5D0E6 543 aaKnown RBP9.95□□□□□ -0.82
LIMCH1-219ENST00000514096 TMX4Q9H1E5 349 aaPredicted RBP9.95□□□□□ -0.82
LIMCH1-219ENST00000514096 CARMIL3Q8ND23 1372 aa9.94□□□□□ -0.82
LIMCH1-219ENST00000514096 CHL1O00533 1208 aa9.94□□□□□ -0.82
LIMCH1-219ENST00000514096 COL3A1P02461 1466 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-219ENST00000514096 CAMTA2O94983 1202 aa9.94□□□□□ -0.82
LIMCH1-219ENST00000514096 CALD1Q05682 793 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-219ENST00000514096 HELBQ8NG08 1087 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-219ENST00000514096 DBF4Q9UBU7 674 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-219ENST00000514096 NSFL1CQ9UNZ2 370 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-219ENST00000514096 C6orf229H3BNL8 230 aa9.94□□□□□ -0.82
LIMCH1-219ENST00000514096 POLRMTO00411 1230 aaKnown RBP9.94□□□□□ -0.82
LIMCH1-219ENST00000514096 TMEM132AQ24JP5 1023 aa9.94□□□□□ -0.82
LIMCH1-219ENST00000514096 CCDC30Q5VVM6 783 aa9.94□□□□□ -0.82
LIMCH1-219ENST00000514096 ZNF277Q9NRM2 450 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-219ENST00000514096 C9orf78Q9NZ63 289 aaPredicted RBP9.94□□□□□ -0.82
LIMCH1-219ENST00000514096 A0A087WZG4 1122 aa9.93□□□□□ -0.82
LIMCH1-219ENST00000514096 NEXNQ0ZGT2 675 aa9.93□□□□□ -0.82
LIMCH1-219ENST00000514096 RBM26Q5T8P6 1007 aaKnown RBP9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms