RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 PNMA6EA0A0J9YXQ4 647 aa11.53□□□□□ -0.56
VCAN-210ENST00000513960 FAM184AQ8NB25 1140 aa11.53□□□□□ -0.56
VCAN-210ENST00000513960 KCNH5Q8NCM2 988 aa11.53□□□□□ -0.56
VCAN-210ENST00000513960 ZNF710Q8N1W2 664 aa11.53□□□□□ -0.56
VCAN-210ENST00000513960 SRCIN1Q9C0H9 1055 aa11.52□□□□□ -0.56
VCAN-210ENST00000513960 IL1RAPL2Q9NP60 686 aa11.52□□□□□ -0.56
VCAN-210ENST00000513960 MCM2P49736 904 aa11.52□□□□□ -0.57
VCAN-210ENST00000513960 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.52□□□□□ -0.57
VCAN-210ENST00000513960 V9GYY5 206 aaPredicted RBP11.52□□□□□ -0.57
VCAN-210ENST00000513960 FERMT3Q86UX7 667 aa11.52□□□□□ -0.57
VCAN-210ENST00000513960 GTPBP4Q9BZE4 634 aaKnown RBP11.52□□□□□ -0.57
VCAN-210ENST00000513960 TRIM5Q9C035 493 aa11.52□□□□□ -0.57
VCAN-210ENST00000513960 BRD1O95696 1058 aa11.52□□□□□ -0.57
VCAN-210ENST00000513960 TPD52L1Q16890 204 aaPredicted RBP11.52□□□□□ -0.57
VCAN-210ENST00000513960 NBPF6Q5VWK0 638 aa11.52□□□□□ -0.57
VCAN-210ENST00000513960 FBXW7Q969H0 707 aa11.52□□□□□ -0.57
VCAN-210ENST00000513960 NBPF4Q96M43 638 aa11.52□□□□□ -0.57
VCAN-210ENST00000513960 PHAXQ9H814 394 aaKnown RBP11.52□□□□□ -0.57
VCAN-210ENST00000513960 PYCARDQ9ULZ3 195 aa11.52□□□□□ -0.57
VCAN-210ENST00000513960 OS9Q13438 667 aaPredicted RBP11.51□□□□□ -0.57
VCAN-210ENST00000513960 USP44Q9H0E7 712 aa11.51□□□□□ -0.57
VCAN-210ENST00000513960 PLEKHO1Q53GL0 409 aaPredicted RBP11.51□□□□□ -0.57
VCAN-210ENST00000513960 ZNF530Q6P9A1 599 aaPredicted RBP11.51□□□□□ -0.57
VCAN-210ENST00000513960 TAOK2Q9UL54 1235 aa11.51□□□□□ -0.57
VCAN-210ENST00000513960 SURF6O75683 361 aaKnown RBP11.51□□□□□ -0.57
VCAN-210ENST00000513960 PTGS1P23219 599 aa11.51□□□□□ -0.57
VCAN-210ENST00000513960 CKAP2LQ8IYA6 745 aa11.51□□□□□ -0.57
VCAN-210ENST00000513960 XRN1Q8IZH2 1706 aaKnown RBP11.51□□□□□ -0.57
VCAN-210ENST00000513960 LETM1O95202 739 aaPredicted RBP11.5□□□□□ -0.57
VCAN-210ENST00000513960 C1orf141Q5JVX7 400 aa11.5□□□□□ -0.57
VCAN-210ENST00000513960 LGR6Q9HBX8 967 aa11.5□□□□□ -0.57
VCAN-210ENST00000513960 BTBD11A6QL63 1104 aa11.5□□□□□ -0.57
VCAN-210ENST00000513960 KDM4AO75164 1064 aa11.49□□□□□ -0.57
VCAN-210ENST00000513960 NUTM1Q86Y26 1132 aa11.49□□□□□ -0.57
VCAN-210ENST00000513960 ESYT1Q9BSJ8 1104 aa11.49□□□□□ -0.57
VCAN-210ENST00000513960 EIF4A1P60842 406 aaKnown RBP11.49□□□□□ -0.57
VCAN-210ENST00000513960 UTP14CQ5TAP6 766 aaKnown RBP11.49□□□□□ -0.57
VCAN-210ENST00000513960 CCDC83Q8IWF9 413 aa11.49□□□□□ -0.57
VCAN-210ENST00000513960 CCDC112Q8NEF3 446 aa11.49□□□□□ -0.57
VCAN-210ENST00000513960 ZBTB22O15209 634 aa11.49□□□□□ -0.57
VCAN-210ENST00000513960 SRGAP3O43295 1099 aa11.49□□□□□ -0.57
VCAN-210ENST00000513960 RAB11FIP3O75154 756 aa11.49□□□□□ -0.57
VCAN-210ENST00000513960 CPA1P15085 419 aa11.49□□□□□ -0.57
VCAN-210ENST00000513960 PPP1R42Q7Z4L9 355 aa11.49□□□□□ -0.57
VCAN-210ENST00000513960 LRRC59Q96AG4 307 aaKnown RBP11.49□□□□□ -0.57
VCAN-210ENST00000513960 CHPF2Q9P2E5 772 aa11.49□□□□□ -0.57
VCAN-210ENST00000513960 ATP6V1DQ9Y5K8 247 aa11.49□□□□□ -0.57
VCAN-210ENST00000513960 TNNT1P13805 278 aa11.48□□□□□ -0.57
VCAN-210ENST00000513960 UVSSAQ2YD98 709 aa11.48□□□□□ -0.57
VCAN-210ENST00000513960 AKAP4Q5JQC9 854 aa11.48□□□□□ -0.57
VCAN-210ENST00000513960 MPRIPQ6WCQ1 1025 aa11.48□□□□□ -0.57
VCAN-210ENST00000513960 DNAAF4Q8WXU2 420 aa11.48□□□□□ -0.57
VCAN-210ENST00000513960 PI4KAP2A4QPH2 592 aa11.48□□□□□ -0.57
VCAN-210ENST00000513960 HOXB7P09629 217 aa11.48□□□□□ -0.57
VCAN-210ENST00000513960 CCDC192P0DO97 292 aa11.48□□□□□ -0.57
VCAN-210ENST00000513960 CCDC186Q7Z3E2 898 aa11.48□□□□□ -0.57
VCAN-210ENST00000513960 PI4KAP1Q8N8J0 262 aa11.48□□□□□ -0.57
VCAN-210ENST00000513960 FGD1P98174 961 aa11.48□□□□□ -0.57
VCAN-210ENST00000513960 DNM1Q05193 864 aaKnown RBP11.48□□□□□ -0.57
VCAN-210ENST00000513960 AMOTQ4VCS5 1084 aa11.48□□□□□ -0.57
VCAN-210ENST00000513960 SSH3Q8TE77 659 aa11.48□□□□□ -0.57
VCAN-210ENST00000513960 KIF20AO95235 890 aa11.47□□□□□ -0.57
VCAN-210ENST00000513960 CHMLP26374 656 aa11.47□□□□□ -0.57
VCAN-210ENST00000513960 FOSBP53539 338 aa11.47□□□□□ -0.57
VCAN-210ENST00000513960 NAA30Q147X3 362 aaPredicted RBP11.47□□□□□ -0.57
VCAN-210ENST00000513960 STAP2Q9UGK3 403 aa11.47□□□□□ -0.57
VCAN-210ENST00000513960 NWD1Q149M9 1564 aa11.47□□□□□ -0.57
VCAN-210ENST00000513960 SETD1BQ9UPS6 1966 aaKnown RBP11.47□□□□□ -0.57
VCAN-210ENST00000513960 GCP02774 474 aa11.47□□□□□ -0.57
VCAN-210ENST00000513960 HSP90AB4PQ58FF6 505 aa11.47□□□□□ -0.57
VCAN-210ENST00000513960 PLCD3Q8N3E9 789 aa11.47□□□□□ -0.57
VCAN-210ENST00000513960 BICD2Q8TD16 824 aa11.47□□□□□ -0.57
VCAN-210ENST00000513960 CEMIPQ8WUJ3 1361 aa11.47□□□□□ -0.57
VCAN-210ENST00000513960 STX6O43752 255 aa11.46□□□□□ -0.57
VCAN-210ENST00000513960 LRMPQ12912 555 aa11.46□□□□□ -0.57
VCAN-210ENST00000513960 SALL3Q9BXA9 1300 aa11.46□□□□□ -0.57
VCAN-210ENST00000513960 ANXA1P04083 346 aa11.46□□□□□ -0.57
VCAN-210ENST00000513960 UBE2HP62256 183 aa11.46□□□□□ -0.57
VCAN-210ENST00000513960 PDE4CQ08493 712 aa11.46□□□□□ -0.57
VCAN-210ENST00000513960 LUZP1Q86V48 1076 aa11.46□□□□□ -0.57
VCAN-210ENST00000513960 KIF1BPQ96EK5 621 aa11.46□□□□□ -0.57
VCAN-210ENST00000513960 PXDNLA1KZ92 1463 aa11.46□□□□□ -0.57
VCAN-210ENST00000513960 KCNQ3O43525 872 aa11.46□□□□□ -0.58
VCAN-210ENST00000513960 RHPN1Q8TCX5 695 aa11.46□□□□□ -0.58
VCAN-210ENST00000513960 C9orf78Q9NZ63 289 aaPredicted RBP11.46□□□□□ -0.58
VCAN-210ENST00000513960 ZSCAN22P10073 491 aaPredicted RBP11.45□□□□□ -0.58
VCAN-210ENST00000513960 FAM173BQ6P4H8 233 aa11.45□□□□□ -0.58
VCAN-210ENST00000513960 CWC27Q6UX04 472 aaKnown RBP11.45□□□□□ -0.58
VCAN-210ENST00000513960 DBF4Q9UBU7 674 aaPredicted RBP11.45□□□□□ -0.58
VCAN-210ENST00000513960 SPG7Q9UQ90 795 aa11.45□□□□□ -0.58
VCAN-210ENST00000513960 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.45□□□□□ -0.58
VCAN-210ENST00000513960 LRRC37A3O60309 1634 aa11.45□□□□□ -0.58
VCAN-210ENST00000513960 NBPF7P0C2Y1 421 aaPredicted RBP11.45□□□□□ -0.58
VCAN-210ENST00000513960 AOX1Q06278 1338 aa11.45□□□□□ -0.58
VCAN-210ENST00000513960 ORAI2Q96SN7 254 aa11.45□□□□□ -0.58
VCAN-210ENST00000513960 TRMT1Q9NXH9 659 aaKnown RBP11.45□□□□□ -0.58
VCAN-210ENST00000513960 NAP1L2Q9ULW6 460 aaPredicted RBP11.45□□□□□ -0.58
VCAN-210ENST00000513960 HDAC5Q9UQL6 1122 aa11.45□□□□□ -0.58
VCAN-210ENST00000513960 CASTP20810 708 aaKnown RBP11.45□□□□□ -0.58
VCAN-210ENST00000513960 ANAPC15P60006 121 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms