RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 ZNF541Q9H0D2 1346 aa14.89□□□□□ -0.03
DDX41-216ENST00000513562 FAM161AQ3B820 660 aa14.88□□□□□ -0.03
DDX41-216ENST00000513562 CCDC93Q567U6 631 aa14.88□□□□□ -0.03
DDX41-216ENST00000513562 EAPPQ56P03 285 aaPredicted RBP14.88□□□□□ -0.03
DDX41-216ENST00000513562 HACL1Q9UJ83 578 aa14.88□□□□□ -0.03
DDX41-216ENST00000513562 ZNF330Q9Y3S2 320 aaPredicted RBP14.88□□□□□ -0.03
DDX41-216ENST00000513562 ADAMTSL1Q8N6G6 1762 aa14.88□□□□□ -0.03
DDX41-216ENST00000513562 NPHP1O15259 732 aa14.87□□□□□ -0.03
DDX41-216ENST00000513562 EPHX2P34913 555 aa14.87□□□□□ -0.03
DDX41-216ENST00000513562 FKBP4Q02790 459 aaKnown RBP eCLIP14.87□□□□□ -0.03
DDX41-216ENST00000513562 ZNF790Q6PG37 636 aa14.87□□□□□ -0.03
DDX41-216ENST00000513562 DEFB115Q30KQ5 88 aa14.86□□□□□ -0.03
DDX41-216ENST00000513562 KNSTRNQ9Y448 316 aa14.86□□□□□ -0.03
DDX41-216ENST00000513562 SCN4AP35499 1836 aa14.86□□□□□ -0.03
DDX41-216ENST00000513562 SLX4Q8IY92 1834 aa14.85□□□□□ -0.03
DDX41-216ENST00000513562 MAP2K1Q02750 393 aaPredicted RBP14.85□□□□□ -0.03
DDX41-216ENST00000513562 AMER1Q5JTC6 1135 aaPredicted RBP14.85□□□□□ -0.03
DDX41-216ENST00000513562 PNMA8AQ86V59 439 aaPredicted RBP14.85□□□□□ -0.03
DDX41-216ENST00000513562 CNTROBQ8N137 903 aa14.85□□□□□ -0.03
DDX41-216ENST00000513562 ZNF277Q9NRM2 450 aaPredicted RBP14.85□□□□□ -0.03
DDX41-216ENST00000513562 CLEC11AQ9Y240 323 aa14.85□□□□□ -0.03
DDX41-216ENST00000513562 WDR33Q9C0J8 1336 aaKnown RBP14.85□□□□□ -0.03
DDX41-216ENST00000513562 ARFGEF2Q9Y6D5 1785 aa14.85□□□□□ -0.03
DDX41-216ENST00000513562 KLRG2A4D1S0 409 aaPredicted RBP14.84□□□□□ -0.03
DDX41-216ENST00000513562 A1BGP04217 495 aa14.84□□□□□ -0.03
DDX41-216ENST00000513562 HSPA5P11021 654 aaKnown RBP14.84□□□□□ -0.03
DDX41-216ENST00000513562 NPR1P16066 1061 aa14.84□□□□□ -0.03
DDX41-216ENST00000513562 EIF4G2P78344 907 aaKnown RBP eCLIP14.84□□□□□ -0.03
DDX41-216ENST00000513562 TEFQ10587 303 aa14.84□□□□□ -0.03
DDX41-216ENST00000513562 MAP1SQ66K74 1059 aaPredicted RBP14.84□□□□□ -0.03
DDX41-216ENST00000513562 NPM2Q86SE8 214 aaKnown RBP14.84□□□□□ -0.03
DDX41-216ENST00000513562 IL17REQ8NFR9 667 aa14.84□□□□□ -0.03
DDX41-216ENST00000513562 FMNL2Q96PY5 1086 aa14.84□□□□□ -0.03
DDX41-216ENST00000513562 VIRMAQ69YN4 1812 aaKnown RBP14.84□□□□□ -0.03
DDX41-216ENST00000513562 RNF123Q5XPI4 1314 aa14.84□□□□□ -0.03
DDX41-216ENST00000513562 FZD9O00144 591 aa14.83□□□□□ -0.04
DDX41-216ENST00000513562 DIAPH1O60610 1272 aaKnown RBP14.83□□□□□ -0.04
DDX41-216ENST00000513562 NBPF5PQ86XG9 351 aaPredicted RBP14.83□□□□□ -0.04
DDX41-216ENST00000513562 DZIP3Q86Y13 1208 aaKnown RBP14.83□□□□□ -0.04
DDX41-216ENST00000513562 RTKN2Q8IZC4 609 aa14.83□□□□□ -0.04
DDX41-216ENST00000513562 THSD7BQ9C0I4 1608 aa14.82□□□□□ -0.04
DDX41-216ENST00000513562 OLFM4Q6UX06 510 aa14.82□□□□□ -0.04
DDX41-216ENST00000513562 CLEC4GQ6UXB4 293 aa14.82□□□□□ -0.04
DDX41-216ENST00000513562 GPC2Q8N158 579 aa14.82□□□□□ -0.04
DDX41-216ENST00000513562 ABT1Q9ULW3 272 aaKnown RBP14.82□□□□□ -0.04
DDX41-216ENST00000513562 BCORQ6W2J9 1755 aa14.81□□□□□ -0.04
DDX41-216ENST00000513562 GNAT3A8MTJ3 354 aa14.81□□□□□ -0.04
DDX41-216ENST00000513562 IARSP41252 1262 aaKnown RBP14.81□□□□□ -0.04
DDX41-216ENST00000513562 RGS19P49795 217 aa14.81□□□□□ -0.04
DDX41-216ENST00000513562 DDX21Q9NR30 783 aaKnown RBP eCLIP14.81□□□□□ -0.04
DDX41-216ENST00000513562 SNED1Q8TER0 1413 aa14.81□□□□□ -0.04
DDX41-216ENST00000513562 MLLT1Q03111 559 aaPredicted RBP14.8□□□□□ -0.04
DDX41-216ENST00000513562 GAS2L2Q8NHY3 880 aa14.8□□□□□ -0.04
DDX41-216ENST00000513562 ZNF652Q9Y2D9 606 aa14.8□□□□□ -0.04
DDX41-216ENST00000513562 CEMIPQ8WUJ3 1361 aa14.8□□□□□ -0.04
DDX41-216ENST00000513562 RGL2O15211 777 aa14.79□□□□□ -0.04
DDX41-216ENST00000513562 SYNE4Q8N205 404 aa14.79□□□□□ -0.04
DDX41-216ENST00000513562 COL3A1P02461 1466 aaPredicted RBP14.78□□□□□ -0.04
DDX41-216ENST00000513562 CCDC85CA6NKD9 419 aa14.78□□□□□ -0.04
DDX41-216ENST00000513562 KCNQ3O43525 872 aa14.78□□□□□ -0.04
DDX41-216ENST00000513562 PIP4K2AP48426 406 aaPredicted RBP14.78□□□□□ -0.04
DDX41-216ENST00000513562 TPTE2Q6XPS3 522 aa14.78□□□□□ -0.04
DDX41-216ENST00000513562 CAPNS2Q96L46 248 aa14.78□□□□□ -0.04
DDX41-216ENST00000513562 PSMD1Q99460 953 aa14.78□□□□□ -0.04
DDX41-216ENST00000513562 PCDH10Q9P2E7 1040 aa14.78□□□□□ -0.04
DDX41-216ENST00000513562 ALDH1B1P30837 517 aa14.77□□□□□ -0.05
DDX41-216ENST00000513562 ECE1P42892 770 aa14.77□□□□□ -0.05
DDX41-216ENST00000513562 BEGAINQ9BUH8 593 aa14.77□□□□□ -0.05
DDX41-216ENST00000513562 USP16Q9Y5T5 823 aa14.77□□□□□ -0.05
DDX41-216ENST00000513562 SIPA1L3O60292 1781 aaPredicted RBP14.77□□□□□ -0.05
DDX41-216ENST00000513562 CLSPNQ9HAW4 1339 aa14.76□□□□□ -0.05
DDX41-216ENST00000513562 BTBD11A6QL63 1104 aa14.76□□□□□ -0.05
DDX41-216ENST00000513562 CYP4F22Q6NT55 531 aa14.76□□□□□ -0.05
DDX41-216ENST00000513562 JDP2Q8WYK2 163 aa14.76□□□□□ -0.05
DDX41-216ENST00000513562 GPR101Q96P66 508 aaPredicted RBP14.76□□□□□ -0.05
DDX41-216ENST00000513562 NIP7Q9Y221 180 aaKnown RBP eCLIP14.76□□□□□ -0.05
DDX41-216ENST00000513562 CACNA1SQ13698 1873 aa14.76□□□□□ -0.05
DDX41-216ENST00000513562 COL4A5P29400 1685 aa14.75□□□□□ -0.05
DDX41-216ENST00000513562 PRAMEF22A3QJZ6 481 aa14.75□□□□□ -0.05
DDX41-216ENST00000513562 LMOD1P29536 600 aaPredicted RBP14.75□□□□□ -0.05
DDX41-216ENST00000513562 SCNN1DP51172 638 aa14.75□□□□□ -0.05
DDX41-216ENST00000513562 EIF6P56537 245 aaKnown RBP14.75□□□□□ -0.05
DDX41-216ENST00000513562 FMR1Q06787 632 aaKnown RBP eCLIP14.75□□□□□ -0.05
DDX41-216ENST00000513562 PAXIP1Q6ZW49 1069 aaPredicted RBP14.75□□□□□ -0.05
DDX41-216ENST00000513562 LTBP1Q14766 1721 aa14.75□□□□□ -0.05
DDX41-216ENST00000513562 CRY2Q49AN0 593 aa14.74□□□□□ -0.05
DDX41-216ENST00000513562 CST9Q5W186 159 aa14.74□□□□□ -0.05
DDX41-216ENST00000513562 GJA3Q9Y6H8 435 aa14.74□□□□□ -0.05
DDX41-216ENST00000513562 TLL2Q9Y6L7 1015 aa14.74□□□□□ -0.05
DDX41-216ENST00000513562 NBPF26B4DH59 902 aa14.73□□□□□ -0.05
DDX41-216ENST00000513562 U2SURPO15042 1029 aaKnown RBP14.73□□□□□ -0.05
DDX41-216ENST00000513562 SNRPA1P09661 255 aaKnown RBP14.73□□□□□ -0.05
DDX41-216ENST00000513562 MAP2K2P36507 400 aa14.73□□□□□ -0.05
DDX41-216ENST00000513562 EPS15P42566 896 aa14.73□□□□□ -0.05
DDX41-216ENST00000513562 CC2D2BQ6DHV5 1058 aa14.73□□□□□ -0.05
DDX41-216ENST00000513562 NBPF10Q6P3W6 841 aaKnown RBP14.73□□□□□ -0.05
DDX41-216ENST00000513562 USP50Q70EL3 339 aaPredicted RBP14.73□□□□□ -0.05
DDX41-216ENST00000513562 NBPF15Q8N660 670 aa14.73□□□□□ -0.05
DDX41-216ENST00000513562 ABCC12Q96J65 1359 aa14.73□□□□□ -0.05
DDX41-216ENST00000513562 FAM177BA6PVY3 158 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms