RNA–Protein interactions for RNA: ENST00000513538.1

TCOF1-212, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 701 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-212ENST00000513538 CAPN15O75808 1086 aa12.99□□□□□ -0.33
TCOF1-212ENST00000513538 SRGNP10124 158 aa12.99□□□□□ -0.33
TCOF1-212ENST00000513538 PRKAR2BP31323 418 aa12.99□□□□□ -0.33
TCOF1-212ENST00000513538 PRPF40BQ6NWY9 871 aaKnown RBP12.99□□□□□ -0.33
TCOF1-212ENST00000513538 TAOK3Q9H2K8 898 aa12.99□□□□□ -0.33
TCOF1-212ENST00000513538 PDZRN3Q9UPQ7 1066 aa12.99□□□□□ -0.33
TCOF1-212ENST00000513538 USP16Q9Y5T5 823 aa12.99□□□□□ -0.33
TCOF1-212ENST00000513538 DDNO94850 711 aaPredicted RBP12.98□□□□□ -0.33
TCOF1-212ENST00000513538 STYK1Q6J9G0 422 aa12.98□□□□□ -0.33
TCOF1-212ENST00000513538 DZIP3Q86Y13 1208 aaKnown RBP12.98□□□□□ -0.33
TCOF1-212ENST00000513538 TNS4Q8IZW8 715 aa12.98□□□□□ -0.33
TCOF1-212ENST00000513538 SETDB2Q96T68 719 aa12.98□□□□□ -0.33
TCOF1-212ENST00000513538 SCN4AP35499 1836 aa12.97□□□□□ -0.33
TCOF1-212ENST00000513538 LAMB4A4D0S4 1761 aa12.97□□□□□ -0.33
TCOF1-212ENST00000513538 BTBD11A6QL63 1104 aa12.97□□□□□ -0.33
TCOF1-212ENST00000513538 DPY19L2Q6NUT2 758 aa12.97□□□□□ -0.33
TCOF1-212ENST00000513538 C7orf43Q8WVR3 580 aa12.97□□□□□ -0.33
TCOF1-212ENST00000513538 CNKSR1Q969H4 720 aa12.97□□□□□ -0.33
TCOF1-212ENST00000513538 ADAMTSL1Q8N6G6 1762 aa12.97□□□□□ -0.33
TCOF1-212ENST00000513538 NBPF26B4DH59 902 aa12.96□□□□□ -0.33
TCOF1-212ENST00000513538 ST5P78524 1137 aa12.96□□□□□ -0.33
TCOF1-212ENST00000513538 NBPF10Q6P3W6 841 aaKnown RBP12.96□□□□□ -0.33
TCOF1-212ENST00000513538 OLFM4Q6UX06 510 aa12.96□□□□□ -0.33
TCOF1-212ENST00000513538 NBPF15Q8N660 670 aa12.96□□□□□ -0.33
TCOF1-212ENST00000513538 MASTLQ96GX5 879 aa12.96□□□□□ -0.33
TCOF1-212ENST00000513538 DLG5Q8TDM6 1919 aa12.96□□□□□ -0.34
TCOF1-212ENST00000513538 CHADLQ6NUI6 762 aa12.95□□□□□ -0.34
TCOF1-212ENST00000513538 MCM10Q7L590 875 aa12.95□□□□□ -0.34
TCOF1-212ENST00000513538 KDM3BQ7LBC6 1761 aa12.94□□□□□ -0.34
TCOF1-212ENST00000513538 ZNF541Q9H0D2 1346 aa12.94□□□□□ -0.34
TCOF1-212ENST00000513538 NPHP1O15259 732 aa12.94□□□□□ -0.34
TCOF1-212ENST00000513538 DCTN1Q14203 1278 aa12.94□□□□□ -0.34
TCOF1-212ENST00000513538 NBPF5PQ86XG9 351 aaPredicted RBP12.94□□□□□ -0.34
TCOF1-212ENST00000513538 CREBZFQ9NS37 354 aa12.94□□□□□ -0.34
TCOF1-212ENST00000513538 MKRN1Q9UHC7 482 aaKnown RBP12.94□□□□□ -0.34
TCOF1-212ENST00000513538 SNED1Q8TER0 1413 aa12.94□□□□□ -0.34
TCOF1-212ENST00000513538 PASKQ96RG2 1323 aa12.93□□□□□ -0.34
TCOF1-212ENST00000513538 COL4A5P29400 1685 aa12.93□□□□□ -0.34
TCOF1-212ENST00000513538 NUP98P52948 1817 aa12.93□□□□□ -0.34
TCOF1-212ENST00000513538 KLRG2A4D1S0 409 aaPredicted RBP12.93□□□□□ -0.34
TCOF1-212ENST00000513538 SNRPA1P09661 255 aaKnown RBP12.93□□□□□ -0.34
TCOF1-212ENST00000513538 L3MBTL3Q96JM7 780 aaPredicted RBP12.93□□□□□ -0.34
TCOF1-212ENST00000513538 CCDC93Q567U6 631 aa12.92□□□□□ -0.34
TCOF1-212ENST00000513538 SOGA3Q5TF21 947 aa12.92□□□□□ -0.34
TCOF1-212ENST00000513538 CLEC4GQ6UXB4 293 aa12.92□□□□□ -0.34
TCOF1-212ENST00000513538 TAF1DQ9H5J8 278 aaPredicted RBP12.92□□□□□ -0.34
TCOF1-212ENST00000513538 ZNF277Q9NRM2 450 aaPredicted RBP12.92□□□□□ -0.34
TCOF1-212ENST00000513538 CNTNAP1P78357 1384 aa12.92□□□□□ -0.34
TCOF1-212ENST00000513538 ABCC12Q96J65 1359 aa12.92□□□□□ -0.34
TCOF1-212ENST00000513538 LTBP1Q14766 1721 aa12.91□□□□□ -0.34
TCOF1-212ENST00000513538 FAM177BA6PVY3 158 aa12.91□□□□□ -0.34
TCOF1-212ENST00000513538 NPR1P16066 1061 aa12.91□□□□□ -0.34
TCOF1-212ENST00000513538 FKBP4Q02790 459 aaKnown RBP eCLIP12.91□□□□□ -0.34
TCOF1-212ENST00000513538 HLFQ16534 295 aa12.91□□□□□ -0.34
TCOF1-212ENST00000513538 NPM2Q86SE8 214 aaKnown RBP12.91□□□□□ -0.34
TCOF1-212ENST00000513538 SLC51AQ86UW1 340 aa12.91□□□□□ -0.34
TCOF1-212ENST00000513538 NIP7Q9Y221 180 aaKnown RBP eCLIP12.91□□□□□ -0.34
TCOF1-212ENST00000513538 ITGBL1O95965 494 aaPredicted RBP12.9□□□□□ -0.34
TCOF1-212ENST00000513538 U2AF1L5P0DN76 240 aaPredicted RBP12.9□□□□□ -0.34
TCOF1-212ENST00000513538 PPP2R1AP30153 589 aa12.9□□□□□ -0.34
TCOF1-212ENST00000513538 U2AF1Q01081 240 aaKnown RBP eCLIP12.9□□□□□ -0.34
TCOF1-212ENST00000513538 LDHDQ86WU2 507 aa12.9□□□□□ -0.34
TCOF1-212ENST00000513538 CFAP53Q96M91 514 aa12.9□□□□□ -0.34
TCOF1-212ENST00000513538 MIS18AQ9NYP9 233 aa12.9□□□□□ -0.34
TCOF1-212ENST00000513538 ZNF652Q9Y2D9 606 aa12.9□□□□□ -0.34
TCOF1-212ENST00000513538 FOXN1O15353 648 aa12.89□□□□□ -0.35
TCOF1-212ENST00000513538 IQCA1LA6NCM1 817 aa12.88□□□□□ -0.35
TCOF1-212ENST00000513538 RGL2O15211 777 aa12.88□□□□□ -0.35
TCOF1-212ENST00000513538 EAPPQ56P03 285 aaPredicted RBP12.88□□□□□ -0.35
TCOF1-212ENST00000513538 TPTE2Q6XPS3 522 aa12.88□□□□□ -0.35
TCOF1-212ENST00000513538 RTF1Q92541 710 aaKnown RBP12.88□□□□□ -0.35
TCOF1-212ENST00000513538 RNF123Q5XPI4 1314 aa12.88□□□□□ -0.35
TCOF1-212ENST00000513538 FZD9O00144 591 aa12.87□□□□□ -0.35
TCOF1-212ENST00000513538 EPHX2P34913 555 aa12.87□□□□□ -0.35
TCOF1-212ENST00000513538 IARSP41252 1262 aaKnown RBP12.87□□□□□ -0.35
TCOF1-212ENST00000513538 VEGFBP49765 207 aa12.87□□□□□ -0.35
TCOF1-212ENST00000513538 CRY2Q49AN0 593 aa12.87□□□□□ -0.35
TCOF1-212ENST00000513538 NUTM1Q86Y26 1132 aa12.87□□□□□ -0.35
TCOF1-212ENST00000513538 NUDCQ9Y266 331 aa12.87□□□□□ -0.35
TCOF1-212ENST00000513538 HTATSF1O43719 755 aaKnown RBP12.86□□□□□ -0.35
TCOF1-212ENST00000513538 TAF7Q15545 349 aaPredicted RBP12.86□□□□□ -0.35
TCOF1-212ENST00000513538 TTLL7Q6ZT98 887 aa12.86□□□□□ -0.35
TCOF1-212ENST00000513538 RTKN2Q8IZC4 609 aa12.86□□□□□ -0.35
TCOF1-212ENST00000513538 SYNE4Q8N205 404 aa12.86□□□□□ -0.35
TCOF1-212ENST00000513538 HACL1Q9UJ83 578 aa12.86□□□□□ -0.35
TCOF1-212ENST00000513538 RIC1Q4ADV7 1423 aa12.86□□□□□ -0.35
TCOF1-212ENST00000513538 UBN2Q6ZU65 1347 aa12.86□□□□□ -0.35
TCOF1-212ENST00000513538 TMEM88BA6NKF7 163 aa12.85□□□□□ -0.35
TCOF1-212ENST00000513538 MAP1SQ66K74 1059 aaPredicted RBP12.85□□□□□ -0.35
TCOF1-212ENST00000513538 C3orf67Q6ZVT6 689 aa12.85□□□□□ -0.35
TCOF1-212ENST00000513538 THSD7BQ9C0I4 1608 aa12.84□□□□□ -0.35
TCOF1-212ENST00000513538 PPP4R3CPQ6ZMV5 832 aa12.84□□□□□ -0.35
TCOF1-212ENST00000513538 NGEFQ8N5V2 710 aa12.84□□□□□ -0.35
TCOF1-212ENST00000513538 PSMD1Q99460 953 aa12.84□□□□□ -0.35
TCOF1-212ENST00000513538 THUMPD2Q9BTF0 503 aaKnown RBP12.84□□□□□ -0.35
TCOF1-212ENST00000513538 MAP3K15Q6ZN16 1313 aa12.84□□□□□ -0.35
TCOF1-212ENST00000513538 LAMB2P55268 1798 aa12.84□□□□□ -0.35
TCOF1-212ENST00000513538 IBTKQ9P2D0 1353 aaPredicted RBP12.83□□□□□ -0.36
TCOF1-212ENST00000513538 GPTP24298 496 aa12.83□□□□□ -0.36
TCOF1-212ENST00000513538 ALDH1B1P30837 517 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms