RNA–Protein interactions for RNA: ENST00000512665.5

NEDD9-213, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 761 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-213ENST00000512665 CCDC93Q567U6 631 aa13.76□□□□□ -0.21
NEDD9-213ENST00000512665 CARD11Q9BXL7 1154 aa13.76□□□□□ -0.21
NEDD9-213ENST00000512665 SAGE1Q9NXZ1 904 aa13.76□□□□□ -0.21
NEDD9-213ENST00000512665 SCN7AQ01118 1682 aa13.75□□□□□ -0.21
NEDD9-213ENST00000512665 CYP19A1P11511 503 aaPredicted RBP13.75□□□□□ -0.21
NEDD9-213ENST00000512665 PRR5LQ6MZQ0 368 aa13.75□□□□□ -0.21
NEDD9-213ENST00000512665 NOGQ13253 232 aa13.74□□□□□ -0.21
NEDD9-213ENST00000512665 CIAPIN1Q6FI81 312 aa13.74□□□□□ -0.21
NEDD9-213ENST00000512665 DNAJC10Q8IXB1 793 aa13.74□□□□□ -0.21
NEDD9-213ENST00000512665 MASTLQ96GX5 879 aa13.74□□□□□ -0.21
NEDD9-213ENST00000512665 TESK2Q96S53 571 aa13.74□□□□□ -0.21
NEDD9-213ENST00000512665 CACNA1SQ13698 1873 aa13.74□□□□□ -0.21
NEDD9-213ENST00000512665 FMR1Q06787 632 aaKnown RBP eCLIP13.73□□□□□ -0.21
NEDD9-213ENST00000512665 AMOTQ4VCS5 1084 aa13.73□□□□□ -0.21
NEDD9-213ENST00000512665 USP50Q70EL3 339 aaPredicted RBP13.73□□□□□ -0.21
NEDD9-213ENST00000512665 NFATC2IPQ8NCF5 419 aa13.73□□□□□ -0.21
NEDD9-213ENST00000512665 PLEKHO1Q53GL0 409 aaPredicted RBP13.72□□□□□ -0.21
NEDD9-213ENST00000512665 RTKN2Q8IZC4 609 aa13.72□□□□□ -0.21
NEDD9-213ENST00000512665 ZBTB1Q9Y2K1 713 aa13.72□□□□□ -0.21
NEDD9-213ENST00000512665 ST20-MTHFSA0A0A6YYL1 179 aa13.71□□□□□ -0.21
NEDD9-213ENST00000512665 TRAF5O00463 557 aa13.71□□□□□ -0.21
NEDD9-213ENST00000512665 LMOD1P29536 600 aaPredicted RBP13.71□□□□□ -0.21
NEDD9-213ENST00000512665 MTHFSP49914 203 aa13.71□□□□□ -0.21
NEDD9-213ENST00000512665 ZNF530Q6P9A1 599 aaPredicted RBP13.71□□□□□ -0.21
NEDD9-213ENST00000512665 ZNF277Q9NRM2 450 aaPredicted RBP13.71□□□□□ -0.21
NEDD9-213ENST00000512665 SCN11AQ9UI33 1791 aa13.71□□□□□ -0.22
NEDD9-213ENST00000512665 MRC1P22897 1456 aa13.7□□□□□ -0.22
NEDD9-213ENST00000512665 IARSP41252 1262 aaKnown RBP13.7□□□□□ -0.22
NEDD9-213ENST00000512665 FXR1P51114 621 aaKnown RBP eCLIP13.7□□□□□ -0.22
NEDD9-213ENST00000512665 SCNN1DP51172 638 aa13.7□□□□□ -0.22
NEDD9-213ENST00000512665 TBC1D9BQ66K14 1250 aa13.7□□□□□ -0.22
NEDD9-213ENST00000512665 CTU1Q7Z7A3 348 aaKnown RBP13.7□□□□□ -0.22
NEDD9-213ENST00000512665 A0A087WZG4 1122 aa13.69□□□□□ -0.22
NEDD9-213ENST00000512665 PPM1GO15355 546 aaPredicted RBP13.69□□□□□ -0.22
NEDD9-213ENST00000512665 EIF5P55010 431 aaKnown RBP13.69□□□□□ -0.22
NEDD9-213ENST00000512665 BICDL1Q6ZP65 573 aa13.69□□□□□ -0.22
NEDD9-213ENST00000512665 VSIG10Q8N0Z9 540 aa13.69□□□□□ -0.22
NEDD9-213ENST00000512665 CNBD1Q8NA66 436 aa13.69□□□□□ -0.22
NEDD9-213ENST00000512665 SNED1Q8TER0 1413 aa13.69□□□□□ -0.22
NEDD9-213ENST00000512665 MKI67P46013 3256 aaKnown RBP13.68□□□□□ -0.22
NEDD9-213ENST00000512665 CELF2O95319 508 aaKnown RBP13.68□□□□□ -0.22
NEDD9-213ENST00000512665 ST5P78524 1137 aa13.68□□□□□ -0.22
NEDD9-213ENST00000512665 EIF4A2Q14240 407 aaKnown RBP13.68□□□□□ -0.22
NEDD9-213ENST00000512665 PKN2Q16513 984 aaKnown RBP13.68□□□□□ -0.22
NEDD9-213ENST00000512665 AKAP4Q5JQC9 854 aa13.68□□□□□ -0.22
NEDD9-213ENST00000512665 C1orf141Q5JVX7 400 aa13.68□□□□□ -0.22
NEDD9-213ENST00000512665 JDP2Q8WYK2 163 aa13.67□□□□□ -0.22
NEDD9-213ENST00000512665 PSMD1Q99460 953 aa13.67□□□□□ -0.22
NEDD9-213ENST00000512665 HPS5Q9UPZ3 1129 aa13.67□□□□□ -0.22
NEDD9-213ENST00000512665 KLRG2A4D1S0 409 aaPredicted RBP13.66□□□□□ -0.22
NEDD9-213ENST00000512665 NPR1P16066 1061 aa13.66□□□□□ -0.22
NEDD9-213ENST00000512665 EPS15P42566 896 aa13.66□□□□□ -0.22
NEDD9-213ENST00000512665 EIF6P56537 245 aaKnown RBP13.66□□□□□ -0.22
NEDD9-213ENST00000512665 PGAP2Q9UHJ9 254 aa13.66□□□□□ -0.22
NEDD9-213ENST00000512665 POLKQ9UBT6 870 aa13.65□□□□□ -0.22
NEDD9-213ENST00000512665 UBR2Q8IWV8 1755 aa13.65□□□□□ -0.22
NEDD9-213ENST00000512665 COL4A5P29400 1685 aa13.64□□□□□ -0.23
NEDD9-213ENST00000512665 DLL1O00548 723 aa13.64□□□□□ -0.23
NEDD9-213ENST00000512665 CCDC24Q8N4L8 307 aa13.64□□□□□ -0.23
NEDD9-213ENST00000512665 ZIC5Q96T25 663 aa13.64□□□□□ -0.23
NEDD9-213ENST00000512665 SETDB2Q96T68 719 aa13.64□□□□□ -0.23
NEDD9-213ENST00000512665 SLC52A2Q9HAB3 445 aa13.64□□□□□ -0.23
NEDD9-213ENST00000512665 ADARB2Q9NS39 739 aaKnown RBP13.64□□□□□ -0.23
NEDD9-213ENST00000512665 SYNE4Q8N205 404 aa13.63□□□□□ -0.23
NEDD9-213ENST00000512665 ZC3H15Q8WU90 426 aaKnown RBP13.63□□□□□ -0.23
NEDD9-213ENST00000512665 GJA3Q9Y6H8 435 aa13.63□□□□□ -0.23
NEDD9-213ENST00000512665 FAM155AB1AL88 458 aaPredicted RBP13.62□□□□□ -0.23
NEDD9-213ENST00000512665 STARD3NLO95772 234 aa13.62□□□□□ -0.23
NEDD9-213ENST00000512665 CANXP27824 592 aaKnown RBP13.62□□□□□ -0.23
NEDD9-213ENST00000512665 RNF186Q9NXI6 227 aa13.62□□□□□ -0.23
NEDD9-213ENST00000512665 A0A0C4DFX4 3053 aa13.62□□□□□ -0.23
NEDD9-213ENST00000512665 NPHP1O15259 732 aa13.61□□□□□ -0.23
NEDD9-213ENST00000512665 GRIPAP1Q4V328 841 aa13.61□□□□□ -0.23
NEDD9-213ENST00000512665 CC2D2BQ6DHV5 1058 aa13.61□□□□□ -0.23
NEDD9-213ENST00000512665 CCDC102AQ96A19 550 aa13.61□□□□□ -0.23
NEDD9-213ENST00000512665 GPRC5DQ9NZD1 345 aa13.61□□□□□ -0.23
NEDD9-213ENST00000512665 CUL9Q8IWT3 2517 aa13.61□□□□□ -0.23
NEDD9-213ENST00000512665 CDHR2Q9BYE9 1310 aa13.61□□□□□ -0.23
NEDD9-213ENST00000512665 AKAP11Q9UKA4 1901 aa13.6□□□□□ -0.23
NEDD9-213ENST00000512665 SZT2Q5T011 3432 aa13.6□□□□□ -0.23
NEDD9-213ENST00000512665 OLFM4Q6UX06 510 aa13.6□□□□□ -0.23
NEDD9-213ENST00000512665 CARD14Q9BXL6 1004 aa13.6□□□□□ -0.23
NEDD9-213ENST00000512665 GLIS2Q9BZE0 524 aaPredicted RBP13.6□□□□□ -0.23
NEDD9-213ENST00000512665 TRPA1O75762 1119 aa13.59□□□□□ -0.23
NEDD9-213ENST00000512665 ALDH1B1P30837 517 aa13.59□□□□□ -0.23
NEDD9-213ENST00000512665 IL6STP40189 918 aaPredicted RBP13.59□□□□□ -0.23
NEDD9-213ENST00000512665 HUNKP57058 714 aa13.59□□□□□ -0.23
NEDD9-213ENST00000512665 RGMBQ6NW40 437 aa13.59□□□□□ -0.23
NEDD9-213ENST00000512665 CDC37L1Q7L3B6 337 aa13.59□□□□□ -0.23
NEDD9-213ENST00000512665 REM2Q8IYK8 340 aaPredicted RBP13.59□□□□□ -0.23
NEDD9-213ENST00000512665 SIN3AQ96ST3 1273 aa13.59□□□□□ -0.23
NEDD9-213ENST00000512665 CAMTA2O94983 1202 aa13.58□□□□□ -0.24
NEDD9-213ENST00000512665 HTTP42858 3142 aa13.57□□□□□ -0.24
NEDD9-213ENST00000512665 RGL2O15211 777 aa13.57□□□□□ -0.24
NEDD9-213ENST00000512665 KIF23Q02241 960 aaPredicted RBP13.57□□□□□ -0.24
NEDD9-213ENST00000512665 SLC39A6Q13433 755 aa13.57□□□□□ -0.24
NEDD9-213ENST00000512665 TBC1D2BQ9UPU7 963 aa13.57□□□□□ -0.24
NEDD9-213ENST00000512665 CDCA8Q53HL2 280 aa13.56□□□□□ -0.24
NEDD9-213ENST00000512665 NOM1Q5C9Z4 860 aaKnown RBP13.56□□□□□ -0.24
NEDD9-213ENST00000512665 CLEC4GQ6UXB4 293 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms