RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 HACE1Q8IYU2 909 aa10.29□□□□□ -0.76
VCAN-208ENST00000512590 ESYT2A0FGR8 921 aa10.28□□□□□ -0.76
VCAN-208ENST00000512590 BACH1O14867 736 aa10.28□□□□□ -0.76
VCAN-208ENST00000512590 SRGAP3O43295 1099 aa10.28□□□□□ -0.76
VCAN-208ENST00000512590 ERMNQ8TAM6 284 aa10.28□□□□□ -0.76
VCAN-208ENST00000512590 SP4Q02446 784 aa10.28□□□□□ -0.76
VCAN-208ENST00000512590 SMARCC2Q8TAQ2 1214 aa10.28□□□□□ -0.76
VCAN-208ENST00000512590 ATP5J2-PTCD1G3V325 749 aa10.28□□□□□ -0.76
VCAN-208ENST00000512590 KAT14Q9H8E8 782 aa10.28□□□□□ -0.76
VCAN-208ENST00000512590 GINS2Q9Y248 185 aa10.28□□□□□ -0.76
VCAN-208ENST00000512590 GNAI2P04899 355 aa10.28□□□□□ -0.76
VCAN-208ENST00000512590 NUCB1Q02818 461 aa10.28□□□□□ -0.76
VCAN-208ENST00000512590 IFFO1Q0D2I5 559 aa10.28□□□□□ -0.76
VCAN-208ENST00000512590 NSMCE1Q8WV22 266 aa10.28□□□□□ -0.76
VCAN-208ENST00000512590 MYD88Q99836 296 aa10.28□□□□□ -0.76
VCAN-208ENST00000512590 CGNQ9P2M7 1197 aaKnown RBP10.28□□□□□ -0.76
VCAN-208ENST00000512590 ANAPC4Q9UJX5 808 aa10.28□□□□□ -0.76
VCAN-208ENST00000512590 PDE4BQ07343 736 aa10.28□□□□□ -0.76
VCAN-208ENST00000512590 PARD3BQ8TEW8 1205 aa10.28□□□□□ -0.76
VCAN-208ENST00000512590 COG6Q9Y2V7 657 aa10.28□□□□□ -0.76
VCAN-208ENST00000512590 CDK19Q9BWU1 502 aa10.27□□□□□ -0.76
VCAN-208ENST00000512590 ANKFY1Q9P2R3 1169 aa10.27□□□□□ -0.76
VCAN-208ENST00000512590 C1orf228Q6PIY5 440 aa10.27□□□□□ -0.77
VCAN-208ENST00000512590 NOP56O00567 594 aaKnown RBP10.27□□□□□ -0.77
VCAN-208ENST00000512590 CCDC40Q4G0X9 1142 aa10.27□□□□□ -0.77
VCAN-208ENST00000512590 ZBED2Q9BTP6 218 aa10.27□□□□□ -0.77
VCAN-208ENST00000512590 ANO3Q9BYT9 981 aa10.27□□□□□ -0.77
VCAN-208ENST00000512590 PHAXQ9H814 394 aaKnown RBP10.27□□□□□ -0.77
VCAN-208ENST00000512590 GPTP24298 496 aa10.26□□□□□ -0.77
VCAN-208ENST00000512590 GANCQ8TET4 914 aa10.26□□□□□ -0.77
VCAN-208ENST00000512590 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.26□□□□□ -0.77
VCAN-208ENST00000512590 CYP46A1Q9Y6A2 500 aa10.26□□□□□ -0.77
VCAN-208ENST00000512590 V9GYY5 206 aaPredicted RBP10.26□□□□□ -0.77
VCAN-208ENST00000512590 CAPN15O75808 1086 aa10.26□□□□□ -0.77
VCAN-208ENST00000512590 GLRX3O76003 335 aaKnown RBP10.26□□□□□ -0.77
VCAN-208ENST00000512590 KRT13P13646 458 aa10.26□□□□□ -0.77
VCAN-208ENST00000512590 ZNF804AQ7Z570 1209 aa10.26□□□□□ -0.77
VCAN-208ENST00000512590 CATIPQ7Z7H3 387 aa10.26□□□□□ -0.77
VCAN-208ENST00000512590 ZC3H12CQ9C0D7 883 aaKnown RBP10.26□□□□□ -0.77
VCAN-208ENST00000512590 TTC12Q9H892 705 aaPredicted RBP10.26□□□□□ -0.77
VCAN-208ENST00000512590 FAM169AQ9Y6X4 670 aa10.26□□□□□ -0.77
VCAN-208ENST00000512590 CCDC196A0A1B0GTZ2 297 aa10.26□□□□□ -0.77
VCAN-208ENST00000512590 CLGNO14967 610 aa10.26□□□□□ -0.77
VCAN-208ENST00000512590 NFE2L2Q16236 605 aa10.26□□□□□ -0.77
VCAN-208ENST00000512590 RNF41Q9H4P4 317 aaPredicted RBP10.26□□□□□ -0.77
VCAN-208ENST00000512590 MKRN1Q9UHC7 482 aaKnown RBP10.26□□□□□ -0.77
VCAN-208ENST00000512590 SPDYE16A6NNV3 312 aaPredicted RBP10.26□□□□□ -0.77
VCAN-208ENST00000512590 RIMBP2O15034 1052 aa10.26□□□□□ -0.77
VCAN-208ENST00000512590 RASA3Q14644 834 aa10.26□□□□□ -0.77
VCAN-208ENST00000512590 SPDYE2Q495Y8 402 aa10.26□□□□□ -0.77
VCAN-208ENST00000512590 CCDC129Q6ZRS4 1044 aa10.26□□□□□ -0.77
VCAN-208ENST00000512590 LUZP1Q86V48 1076 aa10.26□□□□□ -0.77
VCAN-208ENST00000512590 CCDC63Q8NA47 563 aa10.26□□□□□ -0.77
VCAN-208ENST00000512590 MICAL1Q8TDZ2 1067 aa10.26□□□□□ -0.77
VCAN-208ENST00000512590 ZNF692Q9BU19 519 aaPredicted RBP10.26□□□□□ -0.77
VCAN-208ENST00000512590 RBM28Q9NW13 759 aaKnown RBP10.26□□□□□ -0.77
VCAN-208ENST00000512590 LMCD1Q9NZU5 365 aa10.26□□□□□ -0.77
VCAN-208ENST00000512590 TSPY2A6NKD2 308 aa10.26□□□□□ -0.77
VCAN-208ENST00000512590 HMGB1P09429 215 aaKnown RBP10.26□□□□□ -0.77
VCAN-208ENST00000512590 CCDC144CPQ8IYA2 1237 aa10.26□□□□□ -0.77
VCAN-208ENST00000512590 RUNDC1Q96C34 613 aa10.26□□□□□ -0.77
VCAN-208ENST00000512590 IQCGQ9H095 443 aaKnown RBP10.26□□□□□ -0.77
VCAN-208ENST00000512590 LMTK3Q96Q04 1460 aa10.25□□□□□ -0.77
VCAN-208ENST00000512590 LETM1O95202 739 aaPredicted RBP10.25□□□□□ -0.77
VCAN-208ENST00000512590 MAP4K4O95819 1239 aaPredicted RBP10.25□□□□□ -0.77
VCAN-208ENST00000512590 CCDC114Q96M63 670 aa10.25□□□□□ -0.77
VCAN-208ENST00000512590 BCS1LQ9Y276 419 aa10.25□□□□□ -0.77
VCAN-208ENST00000512590 CD2APQ9Y5K6 639 aa10.25□□□□□ -0.77
VCAN-208ENST00000512590 KIF5BP33176 963 aa10.25□□□□□ -0.77
VCAN-208ENST00000512590 GEN1Q17RS7 908 aa10.25□□□□□ -0.77
VCAN-208ENST00000512590 TDRD12Q587J7 1177 aaKnown RBP10.25□□□□□ -0.77
VCAN-208ENST00000512590 ACBD5Q5T8D3 534 aaPredicted RBP10.25□□□□□ -0.77
VCAN-208ENST00000512590 CCDC148Q8NFR7 591 aa10.25□□□□□ -0.77
VCAN-208ENST00000512590 TBC1D5Q92609 795 aa10.25□□□□□ -0.77
VCAN-208ENST00000512590 ATP6V1AP38606 617 aa10.25□□□□□ -0.77
VCAN-208ENST00000512590 C6orf163Q5TEZ5 329 aa10.25□□□□□ -0.77
VCAN-208ENST00000512590 FILIP1Q7Z7B0 1213 aa10.25□□□□□ -0.77
VCAN-208ENST00000512590 CEP112Q8N8E3 955 aa10.25□□□□□ -0.77
VCAN-208ENST00000512590 SMARCC1Q92922 1105 aaPredicted RBP10.25□□□□□ -0.77
VCAN-208ENST00000512590 LRFN2Q9ULH4 789 aa10.25□□□□□ -0.77
VCAN-208ENST00000512590 AFG3L2Q9Y4W6 797 aa10.25□□□□□ -0.77
VCAN-208ENST00000512590 FAM13AO94988 1023 aa10.25□□□□□ -0.77
VCAN-208ENST00000512590 OATP04181 439 aa10.25□□□□□ -0.77
VCAN-208ENST00000512590 PSPC1Q8WXF1 523 aaKnown RBP10.25□□□□□ -0.77
VCAN-208ENST00000512590 TEX13AQ9BXU3 409 aaPredicted RBP10.25□□□□□ -0.77
VCAN-208ENST00000512590 ZGPATQ8N5A5 531 aaKnown RBP10.25□□□□□ -0.77
VCAN-208ENST00000512590 KRT23Q9C075 422 aa10.25□□□□□ -0.77
VCAN-208ENST00000512590 TXNDC16Q9P2K2 825 aa10.25□□□□□ -0.77
VCAN-208ENST00000512590 ZBTB21Q9ULJ3 1066 aa10.25□□□□□ -0.77
VCAN-208ENST00000512590 CDC45O75419 566 aa10.24□□□□□ -0.77
VCAN-208ENST00000512590 PDE6AP16499 860 aa10.24□□□□□ -0.77
VCAN-208ENST00000512590 DNA2P51530 1060 aa10.24□□□□□ -0.77
VCAN-208ENST00000512590 FBXW4P57775 412 aa10.24□□□□□ -0.77
VCAN-208ENST00000512590 IRX3P78415 501 aaPredicted RBP10.24□□□□□ -0.77
VCAN-208ENST00000512590 AMPD3Q01432 767 aa10.24□□□□□ -0.77
VCAN-208ENST00000512590 PRPF4BQ13523 1007 aaKnown RBP10.24□□□□□ -0.77
VCAN-208ENST00000512590 RNF169Q8NCN4 708 aa10.24□□□□□ -0.77
VCAN-208ENST00000512590 MRVI1Q9Y6F6 885 aa10.24□□□□□ -0.77
VCAN-208ENST00000512590 ABL1P00519 1130 aa10.24□□□□□ -0.77
VCAN-208ENST00000512590 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 134 ms