RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 CAMTA2O94983 1202 aa37.92■■■■□ 3.66
LIMCH1-211ENST00000509638 USPL1Q5W0Q7 1092 aa37.92■■■■□ 3.66
LIMCH1-211ENST00000509638 G2E3Q7L622 706 aa37.92■■■■□ 3.66
LIMCH1-211ENST00000509638 MAP3K15Q6ZN16 1313 aa37.91■■■■□ 3.66
LIMCH1-211ENST00000509638 MRPL50Q8N5N7 158 aaKnown RBP37.9■■■■□ 3.66
LIMCH1-211ENST00000509638 ZBTB3Q9H5J0 574 aa37.9■■■■□ 3.66
LIMCH1-211ENST00000509638 ANKRD36CQ5JPF3 1778 aa37.9■■■■□ 3.66
LIMCH1-211ENST00000509638 FLIIQ13045 1269 aa37.89■■■■□ 3.66
LIMCH1-211ENST00000509638 GYS1P13807 737 aa37.89■■■■□ 3.66
LIMCH1-211ENST00000509638 COL24A1Q17RW2 1714 aa37.88■■■■□ 3.65
LIMCH1-211ENST00000509638 MSL1Q68DK7 614 aa37.87■■■■□ 3.65
LIMCH1-211ENST00000509638 SLC16A10Q8TF71 515 aa37.87■■■■□ 3.65
LIMCH1-211ENST00000509638 ZBTB7AO95365 584 aa37.86■■■■□ 3.65
LIMCH1-211ENST00000509638 BCL2L12Q9HB09 334 aa37.86■■■■□ 3.65
LIMCH1-211ENST00000509638 ERVV-1B6SEH8 477 aa37.84■■■■□ 3.65
LIMCH1-211ENST00000509638 FKBP5Q13451 457 aaPredicted RBP37.84■■■■□ 3.65
LIMCH1-211ENST00000509638 FKBP8Q14318 412 aa37.84■■■■□ 3.65
LIMCH1-211ENST00000509638 ZNF652Q9Y2D9 606 aa37.84■■■■□ 3.65
LIMCH1-211ENST00000509638 DDX58O95786 925 aaKnown RBP37.83■■■■□ 3.65
LIMCH1-211ENST00000509638 HLFQ16534 295 aa37.83■■■■□ 3.65
LIMCH1-211ENST00000509638 ANKRD13DQ6ZTN6 518 aa37.83■■■■□ 3.65
LIMCH1-211ENST00000509638 PLBD2Q8NHP8 589 aa37.83■■■■□ 3.65
LIMCH1-211ENST00000509638 MTFR1LQ9H019 292 aa37.82■■■■□ 3.65
LIMCH1-211ENST00000509638 ADCY9O60503 1353 aa37.82■■■■□ 3.64
LIMCH1-211ENST00000509638 BCAR3O75815 825 aa37.81■■■■□ 3.64
LIMCH1-211ENST00000509638 KIF16BQ96L93 1317 aa37.8■■■■□ 3.64
LIMCH1-211ENST00000509638 RGL2O15211 777 aa37.8■■■■□ 3.64
LIMCH1-211ENST00000509638 RCAN3Q9UKA8 241 aa37.8■■■■□ 3.64
LIMCH1-211ENST00000509638 BRPF1P55201 1214 aaPredicted RBP37.79■■■■□ 3.64
LIMCH1-211ENST00000509638 CLEC4GQ6UXB4 293 aa37.79■■■■□ 3.64
LIMCH1-211ENST00000509638 RIC3Q7Z5B4 369 aa37.79■■■■□ 3.64
LIMCH1-211ENST00000509638 SRCAPQ6ZRS2 3230 aa37.79■■■■□ 3.64
LIMCH1-211ENST00000509638 ATP10DQ9P241 1426 aa37.79■■■■□ 3.64
LIMCH1-211ENST00000509638 GIGYF2Q6Y7W6 1299 aaKnown RBP37.78■■■■□ 3.64
LIMCH1-211ENST00000509638 NLGN1Q8N2Q7 840 aa37.78■■■■□ 3.64
LIMCH1-211ENST00000509638 PTPRCP08575 1304 aa37.77■■■■□ 3.64
LIMCH1-211ENST00000509638 PI4KAP2A4QPH2 592 aa37.77■■■■□ 3.64
LIMCH1-211ENST00000509638 PI4KAP1Q8N8J0 262 aa37.77■■■■□ 3.64
LIMCH1-211ENST00000509638 TBC1D9BQ66K14 1250 aa37.76■■■■□ 3.64
LIMCH1-211ENST00000509638 KSR2Q6VAB6 950 aa37.76■■■■□ 3.64
LIMCH1-211ENST00000509638 MAP3K2Q9Y2U5 619 aa37.76■■■■□ 3.64
LIMCH1-211ENST00000509638 AFDNP55196 1824 aaKnown RBP37.76■■■■□ 3.63
LIMCH1-211ENST00000509638 ATF5Q9Y2D1 282 aaPredicted RBP37.76■■■■□ 3.63
LIMCH1-211ENST00000509638 BICDL1Q6ZP65 573 aa37.74■■■■□ 3.63
LIMCH1-211ENST00000509638 NOB1Q9ULX3 412 aaKnown RBP37.74■■■■□ 3.63
LIMCH1-211ENST00000509638 NFIXQ14938 502 aa37.72■■■■□ 3.63
LIMCH1-211ENST00000509638 N4BP2Q86UW6 1770 aaPredicted RBP37.72■■■■□ 3.63
LIMCH1-211ENST00000509638 MMP10P09238 476 aa37.72■■■■□ 3.63
LIMCH1-211ENST00000509638 F6X3S4 739 aa37.71■■■■□ 3.63
LIMCH1-211ENST00000509638 HSP90AB3PQ58FF7 597 aa37.71■■■■□ 3.63
LIMCH1-211ENST00000509638 FRAT1Q92837 279 aaPredicted RBP37.71■■■■□ 3.63
LIMCH1-211ENST00000509638 NIP7Q9Y221 180 aaKnown RBP eCLIP37.71■■■■□ 3.63
LIMCH1-211ENST00000509638 GPTP24298 496 aa37.7■■■■□ 3.63
LIMCH1-211ENST00000509638 DNAAF4Q8WXU2 420 aa37.7■■■■□ 3.63
LIMCH1-211ENST00000509638 CARMIL3Q8ND23 1372 aa37.7■■■■□ 3.63
LIMCH1-211ENST00000509638 DDR1Q08345 913 aa37.69■■■■□ 3.62
LIMCH1-211ENST00000509638 METTL22Q9BUU2 404 aaPredicted RBP37.69■■■■□ 3.62
LIMCH1-211ENST00000509638 TCIRG1Q13488 830 aa37.68■■■■□ 3.62
LIMCH1-211ENST00000509638 MYD88Q99836 296 aa37.68■■■■□ 3.62
LIMCH1-211ENST00000509638 UBN2Q6ZU65 1347 aa37.68■■■■□ 3.62
LIMCH1-211ENST00000509638 NRXN2Q9P2S2 1712 aa37.68■■■■□ 3.62
LIMCH1-211ENST00000509638 TM4SF1P30408 202 aa37.68■■■■□ 3.62
LIMCH1-211ENST00000509638 SETDB2Q96T68 719 aa37.68■■■■□ 3.62
LIMCH1-211ENST00000509638 SPON1Q9HCB6 807 aa37.68■■■■□ 3.62
LIMCH1-211ENST00000509638 PXDNLA1KZ92 1463 aa37.67■■■■□ 3.62
LIMCH1-211ENST00000509638 ZNF34Q8IZ26 560 aa37.67■■■■□ 3.62
LIMCH1-211ENST00000509638 ATP5J2-PTCD1G3V325 749 aa37.66■■■■□ 3.62
LIMCH1-211ENST00000509638 POLRMTO00411 1230 aaKnown RBP37.65■■■■□ 3.62
LIMCH1-211ENST00000509638 POLD1P28340 1107 aa37.65■■■■□ 3.62
LIMCH1-211ENST00000509638 PTGER2P43116 358 aa37.65■■■■□ 3.62
LIMCH1-211ENST00000509638 SGIP1Q9BQI5 828 aa37.65■■■■□ 3.62
LIMCH1-211ENST00000509638 NEXNQ0ZGT2 675 aa37.64■■■■□ 3.62
LIMCH1-211ENST00000509638 IPO8O15397 1037 aaKnown RBP37.63■■■■□ 3.62
LIMCH1-211ENST00000509638 ARHGAP45Q92619 1136 aa37.63■■■■□ 3.62
LIMCH1-211ENST00000509638 API5Q9BZZ5 524 aaKnown RBP37.63■■■■□ 3.62
LIMCH1-211ENST00000509638 LRP5O75197 1615 aa37.63■■■■□ 3.61
LIMCH1-211ENST00000509638 SLC4A10Q6U841 1118 aa37.63■■■■□ 3.61
LIMCH1-211ENST00000509638 ISCA1Q9BUE6 129 aa37.63■■■■□ 3.61
LIMCH1-211ENST00000509638 PARP3Q9Y6F1 533 aa37.63■■■■□ 3.61
LIMCH1-211ENST00000509638 TRIM27P14373 513 aa37.62■■■■□ 3.61
LIMCH1-211ENST00000509638 ZKSCAN2Q63HK3 967 aa37.61■■■■□ 3.61
LIMCH1-211ENST00000509638 ATF7IPQ6VMQ6 1270 aa37.61■■■■□ 3.61
LIMCH1-211ENST00000509638 IGKV5-2P06315 115 aa37.6■■■■□ 3.61
LIMCH1-211ENST00000509638 PARP10Q53GL7 1025 aa37.6■■■■□ 3.61
LIMCH1-211ENST00000509638 NLRP10Q86W26 655 aa37.6■■■■□ 3.61
LIMCH1-211ENST00000509638 FAM177BA6PVY3 158 aa37.59■■■■□ 3.61
LIMCH1-211ENST00000509638 CWF19L2Q2TBE0 894 aaKnown RBP37.59■■■■□ 3.61
LIMCH1-211ENST00000509638 IBTKQ9P2D0 1353 aaPredicted RBP37.59■■■■□ 3.61
LIMCH1-211ENST00000509638 SERPINB2P05120 415 aa37.58■■■■□ 3.61
LIMCH1-211ENST00000509638 NBPF5PQ86XG9 351 aaPredicted RBP37.58■■■■□ 3.61
LIMCH1-211ENST00000509638 LINS1Q8NG48 757 aa37.58■■■■□ 3.61
LIMCH1-211ENST00000509638 TNNQ9UQP3 1299 aa37.58■■■■□ 3.61
LIMCH1-211ENST00000509638 ABCC4O15439 1325 aa37.57■■■■□ 3.6
LIMCH1-211ENST00000509638 TRIM28Q13263 835 aaKnown RBP37.57■■■■□ 3.6
LIMCH1-211ENST00000509638 BEND3Q5T5X7 828 aa37.57■■■■□ 3.6
LIMCH1-211ENST00000509638 SUSD4Q5VX71 490 aa37.57■■■■□ 3.6
LIMCH1-211ENST00000509638 NEURL1BA8MQ27 555 aa37.56■■■■□ 3.6
LIMCH1-211ENST00000509638 CNBD1Q8NA66 436 aa37.55■■■■□ 3.6
LIMCH1-211ENST00000509638 CCDC191Q8NCU4 936 aa37.55■■■■□ 3.6
LIMCH1-211ENST00000509638 CLUAP1Q96AJ1 413 aa37.55■■■■□ 3.6
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms