RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 SIN3BO75182 1162 aa6.93□□□□□ -1.3
NUP54-208ENST00000508604 NCOA4Q13772 614 aa6.93□□□□□ -1.3
NUP54-208ENST00000508604 SLC9A9Q8IVB4 645 aa6.92□□□□□ -1.3
NUP54-208ENST00000508604 RHPN1Q8TCX5 695 aa6.92□□□□□ -1.3
NUP54-208ENST00000508604 HCN2Q9UL51 889 aa6.92□□□□□ -1.3
NUP54-208ENST00000508604 EML1O00423 815 aa6.91□□□□□ -1.3
NUP54-208ENST00000508604 RAD21O60216 631 aa6.91□□□□□ -1.3
NUP54-208ENST00000508604 ATP1A2P50993 1020 aa6.91□□□□□ -1.3
NUP54-208ENST00000508604 ZDHHC1Q8WTX9 485 aa6.91□□□□□ -1.3
NUP54-208ENST00000508604 NACC1Q96RE7 527 aa6.91□□□□□ -1.3
NUP54-208ENST00000508604 ANKIB1Q9P2G1 1089 aa6.91□□□□□ -1.3
NUP54-208ENST00000508604 COG6Q9Y2V7 657 aa6.91□□□□□ -1.3
NUP54-208ENST00000508604 USP17L5A8MUK1 530 aa6.9□□□□□ -1.3
NUP54-208ENST00000508604 TRIM28Q13263 835 aaKnown RBP6.9□□□□□ -1.3
NUP54-208ENST00000508604 ALG2Q9H553 416 aa6.9□□□□□ -1.3
NUP54-208ENST00000508604 RBM19Q9Y4C8 960 aaKnown RBP6.9□□□□□ -1.3
NUP54-208ENST00000508604 ADARB2-AS1A8MUL3 147 aa6.9□□□□□ -1.31
NUP54-208ENST00000508604 M0R082 166 aa6.9□□□□□ -1.31
NUP54-208ENST00000508604 TNS4Q8IZW8 715 aa6.9□□□□□ -1.31
NUP54-208ENST00000508604 ZNF417Q8TAU3 575 aa6.9□□□□□ -1.31
NUP54-208ENST00000508604 ZNF587Q96SQ5 575 aaPredicted RBP6.9□□□□□ -1.31
NUP54-208ENST00000508604 PSMA6P60900 246 aaKnown RBP6.89□□□□□ -1.31
NUP54-208ENST00000508604 TBCELQ5QJ74 424 aa6.89□□□□□ -1.31
NUP54-208ENST00000508604 ZMYM1Q5SVZ6 1142 aa6.89□□□□□ -1.31
NUP54-208ENST00000508604 DEPDC4Q8N2C3 294 aa6.89□□□□□ -1.31
NUP54-208ENST00000508604 TNFRSF25Q93038 417 aa6.89□□□□□ -1.31
NUP54-208ENST00000508604 SPEM2Q0P670 501 aa6.88□□□□□ -1.31
NUP54-208ENST00000508604 SFSWAPQ12872 951 aaKnown RBP6.88□□□□□ -1.31
NUP54-208ENST00000508604 TPCN2Q8NHX9 752 aa6.88□□□□□ -1.31
NUP54-208ENST00000508604 CEP63Q96MT8 703 aa6.88□□□□□ -1.31
NUP54-208ENST00000508604 EPHA4P54764 986 aa6.87□□□□□ -1.31
NUP54-208ENST00000508604 C1orf53Q5VUE5 145 aa6.87□□□□□ -1.31
NUP54-208ENST00000508604 BRD7Q9NPI1 651 aa6.87□□□□□ -1.31
NUP54-208ENST00000508604 ADH7P40394 386 aa6.87□□□□□ -1.31
NUP54-208ENST00000508604 CCDC102BQ68D86 513 aa6.87□□□□□ -1.31
NUP54-208ENST00000508604 SLC30A3Q99726 388 aa6.87□□□□□ -1.31
NUP54-208ENST00000508604 PRDM6Q9NQX0 595 aa6.87□□□□□ -1.31
NUP54-208ENST00000508604 HIF1AQ16665 826 aa6.86□□□□□ -1.31
NUP54-208ENST00000508604 MICALL1Q8N3F8 863 aa6.86□□□□□ -1.31
NUP54-208ENST00000508604 KCNH4Q9UQ05 1017 aa6.86□□□□□ -1.31
NUP54-208ENST00000508604 HCN4Q9Y3Q4 1203 aa6.86□□□□□ -1.31
NUP54-208ENST00000508604 SCO2A0A1W2PP80 73 aa6.85□□□□□ -1.31
NUP54-208ENST00000508604 SFI1A8K8P3 1242 aa6.85□□□□□ -1.31
NUP54-208ENST00000508604 TRAPPC3LQ5T215 181 aa6.85□□□□□ -1.31
NUP54-208ENST00000508604 MDFIQ99750 246 aa6.85□□□□□ -1.31
NUP54-208ENST00000508604 ALBP02768 609 aa6.84□□□□□ -1.31
NUP54-208ENST00000508604 PLEKHM2Q8IWE5 1019 aa6.84□□□□□ -1.31
NUP54-208ENST00000508604 PHACTR1Q9C0D0 580 aa6.84□□□□□ -1.31
NUP54-208ENST00000508604 USP17L3A6NCW0 530 aa6.84□□□□□ -1.32
NUP54-208ENST00000508604 USP17L4A6NCW7 530 aa6.84□□□□□ -1.32
NUP54-208ENST00000508604 PALM3A6NDB9 673 aaPredicted RBP6.84□□□□□ -1.32
NUP54-208ENST00000508604 C9orf172C9J069 976 aa6.84□□□□□ -1.32
NUP54-208ENST00000508604 FAM229AH3BQW9 127 aa6.84□□□□□ -1.32
NUP54-208ENST00000508604 M0R2N6 131 aa6.84□□□□□ -1.32
NUP54-208ENST00000508604 LILRB5O75023 590 aa6.84□□□□□ -1.32
NUP54-208ENST00000508604 HIRAP54198 1017 aaPredicted RBP6.84□□□□□ -1.32
NUP54-208ENST00000508604 RSPO4Q2I0M5 234 aaPredicted RBP6.84□□□□□ -1.32
NUP54-208ENST00000508604 SH3PXD2AQ5TCZ1 1133 aa6.84□□□□□ -1.32
NUP54-208ENST00000508604 USP17L2Q6R6M4 530 aa6.84□□□□□ -1.32
NUP54-208ENST00000508604 USP17L1Q7RTZ2 530 aa6.84□□□□□ -1.32
NUP54-208ENST00000508604 RAB44Q7Z6P3 723 aaPredicted RBP6.84□□□□□ -1.32
NUP54-208ENST00000508604 LARGE2Q8N3Y3 721 aa6.84□□□□□ -1.32
NUP54-208ENST00000508604 TSPAN10Q9H1Z9 355 aaPredicted RBP6.84□□□□□ -1.32
NUP54-208ENST00000508604 TPSG1Q9NRR2 321 aa6.84□□□□□ -1.32
NUP54-208ENST00000508604 PPP1R12BO60237 982 aaPredicted RBP6.83□□□□□ -1.32
NUP54-208ENST00000508604 UBTFP17480 764 aaKnown RBP6.83□□□□□ -1.32
NUP54-208ENST00000508604 KCNQ4P56696 695 aa6.83□□□□□ -1.32
NUP54-208ENST00000508604 TBC1D8BQ0IIM8 1120 aa6.83□□□□□ -1.32
NUP54-208ENST00000508604 C7orf43Q8WVR3 580 aa6.83□□□□□ -1.32
NUP54-208ENST00000508604 BHMTQ93088 406 aa6.83□□□□□ -1.32
NUP54-208ENST00000508604 HSH2DQ96JZ2 352 aa6.83□□□□□ -1.32
NUP54-208ENST00000508604 UBE2OQ9C0C9 1292 aaKnown RBP6.83□□□□□ -1.32
NUP54-208ENST00000508604 STARD13Q9Y3M8 1113 aa6.83□□□□□ -1.32
NUP54-208ENST00000508604 ZBTB7BO15156 539 aaPredicted RBP6.82□□□□□ -1.32
NUP54-208ENST00000508604 OGFOD1Q8N543 542 aa6.82□□□□□ -1.32
NUP54-208ENST00000508604 SUSD3Q96L08 255 aa6.82□□□□□ -1.32
NUP54-208ENST00000508604 IGFLR1Q9H665 355 aa6.82□□□□□ -1.32
NUP54-208ENST00000508604 EFCC1Q9HA90 598 aa6.82□□□□□ -1.32
NUP54-208ENST00000508604 ATP9BO43861 1147 aa6.81□□□□□ -1.32
NUP54-208ENST00000508604 NID1P14543 1247 aa6.81□□□□□ -1.32
NUP54-208ENST00000508604 ITGB7P26010 798 aa6.81□□□□□ -1.32
NUP54-208ENST00000508604 RAC1P63000 192 aa6.81□□□□□ -1.32
NUP54-208ENST00000508604 FLIIQ13045 1269 aa6.81□□□□□ -1.32
NUP54-208ENST00000508604 GRIK4Q16099 956 aa6.81□□□□□ -1.32
NUP54-208ENST00000508604 NKAPLQ5M9Q1 402 aa6.81□□□□□ -1.32
NUP54-208ENST00000508604 C8orf86Q6ZUL3 223 aa6.81□□□□□ -1.32
NUP54-208ENST00000508604 PNMA5Q96PV4 448 aa6.81□□□□□ -1.32
NUP54-208ENST00000508604 MKRN1Q9UHC7 482 aaKnown RBP6.81□□□□□ -1.32
NUP54-208ENST00000508604 DYRK3O43781 588 aa6.81□□□□□ -1.32
NUP54-208ENST00000508604 CLDN10P78369 228 aa6.81□□□□□ -1.32
NUP54-208ENST00000508604 TYRO3Q06418 890 aa6.81□□□□□ -1.32
NUP54-208ENST00000508604 HDGFL1Q5TGJ6 251 aa6.81□□□□□ -1.32
NUP54-208ENST00000508604 POM121Q96HA1 1249 aa6.81□□□□□ -1.32
NUP54-208ENST00000508604 KIAA1024Q9UPX6 916 aa6.81□□□□□ -1.32
NUP54-208ENST00000508604 NRG1Q02297 640 aaPredicted RBP6.8□□□□□ -1.32
NUP54-208ENST00000508604 COL9A3Q14050 684 aaPredicted RBP6.8□□□□□ -1.32
NUP54-208ENST00000508604 ALDH16A1Q8IZ83 802 aa6.8□□□□□ -1.32
NUP54-208ENST00000508604 GAS2L2Q8NHY3 880 aa6.8□□□□□ -1.32
NUP54-208ENST00000508604 JPH1Q9HDC5 661 aaPredicted RBP6.8□□□□□ -1.32
NUP54-208ENST00000508604 ELNP15502 786 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms