RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 CAMTA2O94983 1202 aa27.96■■■□□ 2.07
SQSTM1-210ENST00000506042 BCORQ6W2J9 1755 aa27.96■■■□□ 2.07
SQSTM1-210ENST00000506042 PHACTR3Q96KR7 559 aa27.95■■■□□ 2.06
SQSTM1-210ENST00000506042 ZNF219Q9P2Y4 722 aaPredicted RBP27.95■■■□□ 2.06
SQSTM1-210ENST00000506042 ANKRD31Q8N7Z5 1873 aa27.95■■■□□ 2.06
SQSTM1-210ENST00000506042 TPTE2Q6XPS3 522 aa27.94■■■□□ 2.06
SQSTM1-210ENST00000506042 JMYQ8N9B5 988 aa27.94■■■□□ 2.06
SQSTM1-210ENST00000506042 DICER1Q9UPY3 1922 aaKnown RBP27.93■■■□□ 2.06
SQSTM1-210ENST00000506042 PNNQ9H307 717 aaKnown RBP27.93■■■□□ 2.06
SQSTM1-210ENST00000506042 GTF2E1P29083 439 aaPredicted RBP27.92■■■□□ 2.06
SQSTM1-210ENST00000506042 PNISRQ8TF01 805 aaKnown RBP27.92■■■□□ 2.06
SQSTM1-210ENST00000506042 SRGNP10124 158 aa27.91■■■□□ 2.06
SQSTM1-210ENST00000506042 PPP2R1AP30153 589 aa27.91■■■□□ 2.06
SQSTM1-210ENST00000506042 PRPF40BQ6NWY9 871 aaKnown RBP27.91■■■□□ 2.06
SQSTM1-210ENST00000506042 FER1L6Q2WGJ9 1857 aa27.91■■■□□ 2.06
SQSTM1-210ENST00000506042 IQCA1LA6NCM1 817 aa27.9■■■□□ 2.06
SQSTM1-210ENST00000506042 NPR1P16066 1061 aa27.9■■■□□ 2.06
SQSTM1-210ENST00000506042 COL11A2P13942 1736 aaPredicted RBP27.89■■■□□ 2.06
SQSTM1-210ENST00000506042 ARFGEF2Q9Y6D5 1785 aa27.89■■■□□ 2.06
SQSTM1-210ENST00000506042 TAF7Q15545 349 aaPredicted RBP27.89■■■□□ 2.06
SQSTM1-210ENST00000506042 CCDC93Q567U6 631 aa27.89■■■□□ 2.06
SQSTM1-210ENST00000506042 MCM10Q7L590 875 aa27.89■■■□□ 2.06
SQSTM1-210ENST00000506042 USP16Q9Y5T5 823 aa27.89■■■□□ 2.06
SQSTM1-210ENST00000506042 CCDC24Q8N4L8 307 aa27.88■■■□□ 2.05
SQSTM1-210ENST00000506042 NIP7Q9Y221 180 aaKnown RBP eCLIP27.88■■■□□ 2.05
SQSTM1-210ENST00000506042 CACNA1SQ13698 1873 aa27.87■■■□□ 2.05
SQSTM1-210ENST00000506042 KCNQ3O43525 872 aa27.86■■■□□ 2.05
SQSTM1-210ENST00000506042 ALDH1B1P30837 517 aa27.86■■■□□ 2.05
SQSTM1-210ENST00000506042 NYXQ9GZU5 481 aa27.86■■■□□ 2.05
SQSTM1-210ENST00000506042 HTRA3P83110 453 aa27.85■■■□□ 2.05
SQSTM1-210ENST00000506042 RTKN2Q8IZC4 609 aa27.85■■■□□ 2.05
SQSTM1-210ENST00000506042 PRELPP51888 382 aa27.83■■■□□ 2.05
SQSTM1-210ENST00000506042 CHADLQ6NUI6 762 aa27.83■■■□□ 2.05
SQSTM1-210ENST00000506042 LAMB4A4D0S4 1761 aa27.82■■■□□ 2.04
SQSTM1-210ENST00000506042 KIF6Q6ZMV9 814 aa27.82■■■□□ 2.04
SQSTM1-210ENST00000506042 SLX4Q8IY92 1834 aa27.81■■■□□ 2.04
SQSTM1-210ENST00000506042 MAPK8IP3Q9UPT6 1336 aa27.81■■■□□ 2.04
SQSTM1-210ENST00000506042 PIP4K2AP48426 406 aaPredicted RBP27.8■■■□□ 2.04
SQSTM1-210ENST00000506042 FKBP4Q02790 459 aaKnown RBP eCLIP27.8■■■□□ 2.04
SQSTM1-210ENST00000506042 GRIPAP1Q4V328 841 aa27.79■■■□□ 2.04
SQSTM1-210ENST00000506042 DCTN1Q14203 1278 aa27.78■■■□□ 2.04
SQSTM1-210ENST00000506042 CC2D2BQ6DHV5 1058 aa27.78■■■□□ 2.04
SQSTM1-210ENST00000506042 TMX4Q9H1E5 349 aaPredicted RBP27.78■■■□□ 2.04
SQSTM1-210ENST00000506042 CREBZFQ9NS37 354 aa27.78■■■□□ 2.04
SQSTM1-210ENST00000506042 SCN4AP35499 1836 aa27.77■■■□□ 2.04
SQSTM1-210ENST00000506042 ERVV-1B6SEH8 477 aa27.77■■■□□ 2.04
SQSTM1-210ENST00000506042 LDHDQ86WU2 507 aa27.77■■■□□ 2.04
SQSTM1-210ENST00000506042 PRAMEF22A3QJZ6 481 aa27.76■■■□□ 2.03
SQSTM1-210ENST00000506042 KLRG2A4D1S0 409 aaPredicted RBP27.76■■■□□ 2.03
SQSTM1-210ENST00000506042 FAM177BA6PVY3 158 aa27.76■■■□□ 2.03
SQSTM1-210ENST00000506042 DDNO94850 711 aaPredicted RBP27.76■■■□□ 2.03
SQSTM1-210ENST00000506042 TNS4Q8IZW8 715 aa27.75■■■□□ 2.03
SQSTM1-210ENST00000506042 JDP2Q8WYK2 163 aa27.75■■■□□ 2.03
SQSTM1-210ENST00000506042 RPGRQ92834 1020 aaKnown RBP27.75■■■□□ 2.03
SQSTM1-210ENST00000506042 L3MBTL3Q96JM7 780 aaPredicted RBP27.75■■■□□ 2.03
SQSTM1-210ENST00000506042 POTECB2RU33 542 aa27.74■■■□□ 2.03
SQSTM1-210ENST00000506042 NBPF26B4DH59 902 aa27.73■■■□□ 2.03
SQSTM1-210ENST00000506042 NBPF10Q6P3W6 841 aaKnown RBP27.73■■■□□ 2.03
SQSTM1-210ENST00000506042 PNMA8AQ86V59 439 aaPredicted RBP27.73■■■□□ 2.03
SQSTM1-210ENST00000506042 NBPF15Q8N660 670 aa27.73■■■□□ 2.03
SQSTM1-210ENST00000506042 ERBB4Q15303 1308 aa27.72■■■□□ 2.03
SQSTM1-210ENST00000506042 HACL1Q9UJ83 578 aa27.72■■■□□ 2.03
SQSTM1-210ENST00000506042 MAP3K15Q6ZN16 1313 aa27.71■■■□□ 2.03
SQSTM1-210ENST00000506042 HSPA1AP0DMV8 641 aaKnown RBP27.71■■■□□ 2.03
SQSTM1-210ENST00000506042 HSPA1BP0DMV9 641 aaKnown RBP27.71■■■□□ 2.03
SQSTM1-210ENST00000506042 NFE2L2Q16236 605 aa27.71■■■□□ 2.03
SQSTM1-210ENST00000506042 NGEFQ8N5V2 710 aa27.71■■■□□ 2.03
SQSTM1-210ENST00000506042 C7orf43Q8WVR3 580 aa27.71■■■□□ 2.03
SQSTM1-210ENST00000506042 IBTKQ9P2D0 1353 aaPredicted RBP27.71■■■□□ 2.03
SQSTM1-210ENST00000506042 IARSP41252 1262 aaKnown RBP27.7■■■□□ 2.02
SQSTM1-210ENST00000506042 CLEC11AQ9Y240 323 aa27.7■■■□□ 2.02
SQSTM1-210ENST00000506042 RRP7AQ9Y3A4 280 aaKnown RBP27.7■■■□□ 2.02
SQSTM1-210ENST00000506042 KDM3BQ7LBC6 1761 aa27.69■■■□□ 2.02
SQSTM1-210ENST00000506042 TAF1DQ9H5J8 278 aaPredicted RBP27.69■■■□□ 2.02
SQSTM1-210ENST00000506042 ZNF277Q9NRM2 450 aaPredicted RBP27.69■■■□□ 2.02
SQSTM1-210ENST00000506042 DLG5Q8TDM6 1919 aa27.69■■■□□ 2.02
SQSTM1-210ENST00000506042 EIF6P56537 245 aaKnown RBP27.68■■■□□ 2.02
SQSTM1-210ENST00000506042 LMOD3Q0VAK6 560 aa27.68■■■□□ 2.02
SQSTM1-210ENST00000506042 EAPPQ56P03 285 aaPredicted RBP27.68■■■□□ 2.02
SQSTM1-210ENST00000506042 COL13A1Q5TAT6 717 aaPredicted RBP27.68■■■□□ 2.02
SQSTM1-210ENST00000506042 PPP1R42Q7Z4L9 355 aa27.68■■■□□ 2.02
SQSTM1-210ENST00000506042 PSMD1Q99460 953 aa27.68■■■□□ 2.02
SQSTM1-210ENST00000506042 MIS18AQ9NYP9 233 aa27.68■■■□□ 2.02
SQSTM1-210ENST00000506042 HLFQ16534 295 aa27.67■■■□□ 2.02
SQSTM1-210ENST00000506042 RBM17Q96I25 401 aaKnown RBP27.67■■■□□ 2.02
SQSTM1-210ENST00000506042 RIC1Q4ADV7 1423 aa27.67■■■□□ 2.02
SQSTM1-210ENST00000506042 MYL6BP14649 208 aa27.66■■■□□ 2.02
SQSTM1-210ENST00000506042 LMOD1P29536 600 aaPredicted RBP27.66■■■□□ 2.02
SQSTM1-210ENST00000506042 EIF4A1P60842 406 aaKnown RBP27.66■■■□□ 2.02
SQSTM1-210ENST00000506042 GPC2Q8N158 579 aa27.66■■■□□ 2.02
SQSTM1-210ENST00000506042 SYNE4Q8N205 404 aa27.66■■■□□ 2.02
SQSTM1-210ENST00000506042 NUP98P52948 1817 aa27.65■■■□□ 2.02
SQSTM1-210ENST00000506042 CRY2Q49AN0 593 aa27.65■■■□□ 2.02
SQSTM1-210ENST00000506042 PARP10Q53GL7 1025 aa27.65■■■□□ 2.02
SQSTM1-210ENST00000506042 AIDAQ96BJ3 306 aa27.65■■■□□ 2.02
SQSTM1-210ENST00000506042 EPHX2P34913 555 aa27.64■■■□□ 2.02
SQSTM1-210ENST00000506042 TMEM88BA6NKF7 163 aa27.63■■■□□ 2.01
SQSTM1-210ENST00000506042 BABAM1Q9NWV8 329 aa27.63■■■□□ 2.01
SQSTM1-210ENST00000506042 MKRN1Q9UHC7 482 aaKnown RBP27.63■■■□□ 2.01
SQSTM1-210ENST00000506042 TSPYL4Q9UJ04 414 aa27.63■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms