RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 CICQ96RK0 1608 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-206ENST00000505705 FKBP5Q13451 457 aaPredicted RBP10.49□□□□□ -0.73
LIMCH1-206ENST00000505705 ALDH1L2Q3SY69 923 aa10.49□□□□□ -0.73
LIMCH1-206ENST00000505705 RIC3Q7Z5B4 369 aa10.49□□□□□ -0.73
LIMCH1-206ENST00000505705 ZBTB3Q9H5J0 574 aa10.49□□□□□ -0.73
LIMCH1-206ENST00000505705 SRP68Q9UHB9 627 aaKnown RBP10.49□□□□□ -0.73
LIMCH1-206ENST00000505705 NARFQ9UHQ1 456 aa10.49□□□□□ -0.73
LIMCH1-206ENST00000505705 ZNF652Q9Y2D9 606 aa10.49□□□□□ -0.73
LIMCH1-206ENST00000505705 ZBTB7AO95365 584 aa10.48□□□□□ -0.73
LIMCH1-206ENST00000505705 MSL1Q68DK7 614 aa10.48□□□□□ -0.73
LIMCH1-206ENST00000505705 BICDL1Q6ZP65 573 aa10.48□□□□□ -0.73
LIMCH1-206ENST00000505705 TTLL7Q6ZT98 887 aa10.48□□□□□ -0.73
LIMCH1-206ENST00000505705 ANKRD13DQ6ZTN6 518 aa10.48□□□□□ -0.73
LIMCH1-206ENST00000505705 SLC16A10Q8TF71 515 aa10.48□□□□□ -0.73
LIMCH1-206ENST00000505705 SSH1Q8WYL5 1049 aa10.48□□□□□ -0.73
LIMCH1-206ENST00000505705 PDGFDQ9GZP0 370 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-206ENST00000505705 ATF5Q9Y2D1 282 aaPredicted RBP10.48□□□□□ -0.73
LIMCH1-206ENST00000505705 MYH14Q7Z406 1995 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-206ENST00000505705 NPHP1O15259 732 aa10.47□□□□□ -0.73
LIMCH1-206ENST00000505705 RARSP54136 660 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-206ENST00000505705 FLIIQ13045 1269 aa10.47□□□□□ -0.73
LIMCH1-206ENST00000505705 G2E3Q7L622 706 aa10.47□□□□□ -0.73
LIMCH1-206ENST00000505705 NLGN1Q8N2Q7 840 aa10.47□□□□□ -0.73
LIMCH1-206ENST00000505705 MRPL50Q8N5N7 158 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-206ENST00000505705 FRAT1Q92837 279 aaPredicted RBP10.47□□□□□ -0.73
LIMCH1-206ENST00000505705 MAP3K15Q6ZN16 1313 aa10.47□□□□□ -0.73
LIMCH1-206ENST00000505705 USP42Q9H9J4 1324 aaKnown RBP10.47□□□□□ -0.73
LIMCH1-206ENST00000505705 ERVV-1B6SEH8 477 aa10.46□□□□□ -0.73
LIMCH1-206ENST00000505705 BCAR3O75815 825 aa10.46□□□□□ -0.73
LIMCH1-206ENST00000505705 CAMTA2O94983 1202 aa10.46□□□□□ -0.73
LIMCH1-206ENST00000505705 GYS1P13807 737 aa10.46□□□□□ -0.73
LIMCH1-206ENST00000505705 POLD1P28340 1107 aa10.46□□□□□ -0.73
LIMCH1-206ENST00000505705 LRP10Q7Z4F1 713 aa10.46□□□□□ -0.73
LIMCH1-206ENST00000505705 PLBD2Q8NHP8 589 aa10.46□□□□□ -0.73
LIMCH1-206ENST00000505705 MTFR1LQ9H019 292 aa10.46□□□□□ -0.73
LIMCH1-206ENST00000505705 RCAN3Q9UKA8 241 aa10.46□□□□□ -0.73
LIMCH1-206ENST00000505705 NOB1Q9ULX3 412 aaKnown RBP10.46□□□□□ -0.73
LIMCH1-206ENST00000505705 UBR3Q6ZT12 1888 aa10.46□□□□□ -0.74
LIMCH1-206ENST00000505705 PI4KAP2A4QPH2 592 aa10.45□□□□□ -0.74
LIMCH1-206ENST00000505705 IPO8O15397 1037 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-206ENST00000505705 NEXNQ0ZGT2 675 aa10.45□□□□□ -0.74
LIMCH1-206ENST00000505705 FKBP8Q14318 412 aa10.45□□□□□ -0.74
LIMCH1-206ENST00000505705 HLFQ16534 295 aa10.45□□□□□ -0.74
LIMCH1-206ENST00000505705 HSP90AB3PQ58FF7 597 aa10.45□□□□□ -0.74
LIMCH1-206ENST00000505705 SLC4A10Q6U841 1118 aa10.45□□□□□ -0.74
LIMCH1-206ENST00000505705 CLEC4GQ6UXB4 293 aa10.45□□□□□ -0.74
LIMCH1-206ENST00000505705 KSR2Q6VAB6 950 aa10.45□□□□□ -0.74
LIMCH1-206ENST00000505705 GIGYF2Q6Y7W6 1299 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-206ENST00000505705 PI4KAP1Q8N8J0 262 aa10.45□□□□□ -0.74
LIMCH1-206ENST00000505705 SETDB2Q96T68 719 aa10.45□□□□□ -0.74
LIMCH1-206ENST00000505705 SPON1Q9HCB6 807 aa10.45□□□□□ -0.74
LIMCH1-206ENST00000505705 NIP7Q9Y221 180 aaKnown RBP eCLIP10.45□□□□□ -0.74
LIMCH1-206ENST00000505705 MAP3K2Q9Y2U5 619 aa10.45□□□□□ -0.74
LIMCH1-206ENST00000505705 PARP3Q9Y6F1 533 aa10.45□□□□□ -0.74
LIMCH1-206ENST00000505705 PTPRCP08575 1304 aa10.44□□□□□ -0.74
LIMCH1-206ENST00000505705 KIF16BQ96L93 1317 aa10.44□□□□□ -0.74
LIMCH1-206ENST00000505705 FAM177BA6PVY3 158 aa10.44□□□□□ -0.74
LIMCH1-206ENST00000505705 GTF2E1P29083 439 aaPredicted RBP10.44□□□□□ -0.74
LIMCH1-206ENST00000505705 TBC1D9BQ66K14 1250 aa10.44□□□□□ -0.74
LIMCH1-206ENST00000505705 MYD88Q99836 296 aa10.44□□□□□ -0.74
LIMCH1-206ENST00000505705 TUBGCP6Q96RT7 1819 aa10.43□□□□□ -0.74
LIMCH1-206ENST00000505705 MMP10P09238 476 aa10.43□□□□□ -0.74
LIMCH1-206ENST00000505705 GPTP24298 496 aa10.43□□□□□ -0.74
LIMCH1-206ENST00000505705 TCIRG1Q13488 830 aa10.43□□□□□ -0.74
LIMCH1-206ENST00000505705 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-206ENST00000505705 DNAAF4Q8WXU2 420 aa10.43□□□□□ -0.74
LIMCH1-206ENST00000505705 API5Q9BZZ5 524 aaKnown RBP10.43□□□□□ -0.74
LIMCH1-206ENST00000505705 BCL2L12Q9HB09 334 aa10.43□□□□□ -0.74
LIMCH1-206ENST00000505705 QSER1Q2KHR3 1735 aa10.42□□□□□ -0.74
LIMCH1-206ENST00000505705 F6X3S4 739 aa10.42□□□□□ -0.74
LIMCH1-206ENST00000505705 ATP5J2-PTCD1G3V325 749 aa10.42□□□□□ -0.74
LIMCH1-206ENST00000505705 BRPF1P55201 1214 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-206ENST00000505705 NFIXQ14938 502 aa10.42□□□□□ -0.74
LIMCH1-206ENST00000505705 ZKSCAN2Q63HK3 967 aa10.42□□□□□ -0.74
LIMCH1-206ENST00000505705 PPP1R42Q7Z4L9 355 aa10.42□□□□□ -0.74
LIMCH1-206ENST00000505705 NBPF5PQ86XG9 351 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-206ENST00000505705 KLHL34Q8N239 644 aa10.42□□□□□ -0.74
LIMCH1-206ENST00000505705 METTL22Q9BUU2 404 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-206ENST00000505705 PPP1R1BQ9UD71 204 aaPredicted RBP10.42□□□□□ -0.74
LIMCH1-206ENST00000505705 RGL2O15211 777 aa10.41□□□□□ -0.74
LIMCH1-206ENST00000505705 SERPINB2P05120 415 aa10.41□□□□□ -0.74
LIMCH1-206ENST00000505705 TM4SF1P30408 202 aa10.41□□□□□ -0.74
LIMCH1-206ENST00000505705 PARP10Q53GL7 1025 aa10.41□□□□□ -0.74
LIMCH1-206ENST00000505705 TPTE2Q6XPS3 522 aa10.41□□□□□ -0.74
LIMCH1-206ENST00000505705 FTSJ3Q8IY81 847 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-206ENST00000505705 CLUAP1Q96AJ1 413 aa10.41□□□□□ -0.74
LIMCH1-206ENST00000505705 NYXQ9GZU5 481 aa10.41□□□□□ -0.74
LIMCH1-206ENST00000505705 C4AP0C0L4 1744 aa10.41□□□□□ -0.74
LIMCH1-206ENST00000505705 ADCY9O60503 1353 aa10.4□□□□□ -0.74
LIMCH1-206ENST00000505705 CENPBP07199 599 aaPredicted RBP10.4□□□□□ -0.74
LIMCH1-206ENST00000505705 ST5P78524 1137 aa10.4□□□□□ -0.74
LIMCH1-206ENST00000505705 ATF7IPQ6VMQ6 1270 aa10.4□□□□□ -0.74
LIMCH1-206ENST00000505705 ZNF34Q8IZ26 560 aa10.4□□□□□ -0.74
LIMCH1-206ENST00000505705 ARHGAP45Q92619 1136 aa10.4□□□□□ -0.74
LIMCH1-206ENST00000505705 UTP14AQ9BVJ6 771 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-206ENST00000505705 SRCIN1Q9C0H9 1055 aa10.4□□□□□ -0.74
LIMCH1-206ENST00000505705 TRMT112Q9UI30 125 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-206ENST00000505705 CARMIL3Q8ND23 1372 aa10.39□□□□□ -0.75
LIMCH1-206ENST00000505705 POLRMTO00411 1230 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-206ENST00000505705 PLIN1O60240 522 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms