RNA–Protein interactions for RNA: ENST00000505054.2

SYNE4-207, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

TSL 3

Gene SYNE4, Length 713 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-207ENST00000505054 ZNF853P0CG23 659 aa21.98■■□□□ 1.11
SYNE4-207ENST00000505054 CFAP44Q96MT7 982 aa21.98■■□□□ 1.11
SYNE4-207ENST00000505054 TEX13AQ9BXU3 409 aaPredicted RBP21.98■■□□□ 1.11
SYNE4-207ENST00000505054 BCL2L12Q9HB09 334 aa21.98■■□□□ 1.11
SYNE4-207ENST00000505054 SALL2Q9Y467 1007 aaPredicted RBP21.98■■□□□ 1.11
SYNE4-207ENST00000505054 LAS1LQ9Y4W2 734 aaKnown RBP21.98■■□□□ 1.11
SYNE4-207ENST00000505054 COL11A2P13942 1736 aaPredicted RBP21.97■■□□□ 1.11
SYNE4-207ENST00000505054 STARD3NLO95772 234 aa21.97■■□□□ 1.11
SYNE4-207ENST00000505054 SERPINB2P05120 415 aa21.97■■□□□ 1.11
SYNE4-207ENST00000505054 CALD1Q05682 793 aaKnown RBP21.97■■□□□ 1.11
SYNE4-207ENST00000505054 RRAGCQ9HB90 399 aa21.97■■□□□ 1.11
SYNE4-207ENST00000505054 IFT57Q9NWB7 429 aa21.97■■□□□ 1.11
SYNE4-207ENST00000505054 USP16Q9Y5T5 823 aa21.97■■□□□ 1.11
SYNE4-207ENST00000505054 CARMIL3Q8ND23 1372 aa21.97■■□□□ 1.11
SYNE4-207ENST00000505054 DICER1Q9UPY3 1922 aaKnown RBP21.96■■□□□ 1.11
SYNE4-207ENST00000505054 LMNB1P20700 586 aa21.96■■□□□ 1.11
SYNE4-207ENST00000505054 KLRG1Q96E93 195 aa21.96■■□□□ 1.11
SYNE4-207ENST00000505054 BCORQ6W2J9 1755 aa21.95■■□□□ 1.1
SYNE4-207ENST00000505054 SMC1BQ8NDV3 1235 aa21.95■■□□□ 1.1
SYNE4-207ENST00000505054 MBIPQ9NS73 344 aa21.95■■□□□ 1.1
SYNE4-207ENST00000505054 LAMB4A4D0S4 1761 aa21.94■■□□□ 1.1
SYNE4-207ENST00000505054 GNAI1P63096 354 aa21.94■■□□□ 1.1
SYNE4-207ENST00000505054 TTLL6Q8N841 843 aa21.94■■□□□ 1.1
SYNE4-207ENST00000505054 FER1L6Q2WGJ9 1857 aa21.94■■□□□ 1.1
SYNE4-207ENST00000505054 A0A087WZG4 1122 aa21.93■■□□□ 1.1
SYNE4-207ENST00000505054 A1BGP04217 495 aa21.93■■□□□ 1.1
SYNE4-207ENST00000505054 CANXP27824 592 aaKnown RBP21.93■■□□□ 1.1
SYNE4-207ENST00000505054 HTRA3P83110 453 aa21.93■■□□□ 1.1
SYNE4-207ENST00000505054 KRT24Q2M2I5 525 aa21.93■■□□□ 1.1
SYNE4-207ENST00000505054 NGEFQ8N5V2 710 aa21.93■■□□□ 1.1
SYNE4-207ENST00000505054 JMYQ8N9B5 988 aa21.93■■□□□ 1.1
SYNE4-207ENST00000505054 ARFGEF2Q9Y6D5 1785 aa21.93■■□□□ 1.1
SYNE4-207ENST00000505054 CACNA1SQ13698 1873 aa21.92■■□□□ 1.1
SYNE4-207ENST00000505054 IL16Q14005 1332 aa21.92■■□□□ 1.1
SYNE4-207ENST00000505054 EIF5P55010 431 aaKnown RBP21.92■■□□□ 1.1
SYNE4-207ENST00000505054 C2CD5Q86YS7 1000 aa21.92■■□□□ 1.1
SYNE4-207ENST00000505054 ZNF521Q96K83 1311 aa21.91■■□□□ 1.1
SYNE4-207ENST00000505054 GLTPD2A6NH11 291 aa21.91■■□□□ 1.1
SYNE4-207ENST00000505054 H0YIN7 160 aa21.91■■□□□ 1.1
SYNE4-207ENST00000505054 PRELPP51888 382 aa21.91■■□□□ 1.1
SYNE4-207ENST00000505054 PIP4K2AP48426 406 aaPredicted RBP21.9■■□□□ 1.1
SYNE4-207ENST00000505054 WDR63Q8IWG1 891 aa21.9■■□□□ 1.1
SYNE4-207ENST00000505054 NBPF26B4DH59 902 aa21.89■■□□□ 1.09
SYNE4-207ENST00000505054 NFKBIEO00221 500 aa21.89■■□□□ 1.09
SYNE4-207ENST00000505054 NBPF10Q6P3W6 841 aaKnown RBP21.89■■□□□ 1.09
SYNE4-207ENST00000505054 BICDL1Q6ZP65 573 aa21.89■■□□□ 1.09
SYNE4-207ENST00000505054 NBPF15Q8N660 670 aa21.89■■□□□ 1.09
SYNE4-207ENST00000505054 PDZRN3Q9UPQ7 1066 aa21.89■■□□□ 1.09
SYNE4-207ENST00000505054 VEGFAP15692 232 aaPredicted RBP21.88■■□□□ 1.09
SYNE4-207ENST00000505054 TSR2Q969E8 191 aaKnown RBP21.88■■□□□ 1.09
SYNE4-207ENST00000505054 IL6STP40189 918 aaPredicted RBP21.87■■□□□ 1.09
SYNE4-207ENST00000505054 TBC1D9BQ66K14 1250 aa21.87■■□□□ 1.09
SYNE4-207ENST00000505054 SPINK5Q9NQ38 1064 aaPredicted RBP21.87■■□□□ 1.09
SYNE4-207ENST00000505054 PDE6BP35913 854 aa21.86■■□□□ 1.09
SYNE4-207ENST00000505054 PRR5LQ6MZQ0 368 aa21.85■■□□□ 1.09
SYNE4-207ENST00000505054 BRIP1Q9BX63 1249 aa21.85■■□□□ 1.09
SYNE4-207ENST00000505054 FANCIQ9NVI1 1328 aa21.84■■□□□ 1.09
SYNE4-207ENST00000505054 HOXB7P09629 217 aa21.84■■□□□ 1.09
SYNE4-207ENST00000505054 DUSP27Q5VZP5 1158 aa21.84■■□□□ 1.09
SYNE4-207ENST00000505054 C8orf58Q8NAV2 365 aa21.84■■□□□ 1.09
SYNE4-207ENST00000505054 ZNF330Q9Y3S2 320 aaPredicted RBP21.84■■□□□ 1.09
SYNE4-207ENST00000505054 SLX4Q8IY92 1834 aa21.84■■□□□ 1.09
SYNE4-207ENST00000505054 EIF2S2P20042 333 aaKnown RBP21.83■■□□□ 1.09
SYNE4-207ENST00000505054 ZNF622Q969S3 477 aaKnown RBP eCLIP21.83■■□□□ 1.09
SYNE4-207ENST00000505054 TBC1D2BQ9UPU7 963 aa21.83■■□□□ 1.09
SYNE4-207ENST00000505054 ERBB4Q15303 1308 aa21.82■■□□□ 1.08
SYNE4-207ENST00000505054 PDIA6Q15084 440 aa21.82■■□□□ 1.08
SYNE4-207ENST00000505054 NECTIN2Q92692 538 aa21.82■■□□□ 1.08
SYNE4-207ENST00000505054 PCNTO95613 3336 aa21.82■■□□□ 1.08
SYNE4-207ENST00000505054 LTBP3Q9NS15 1303 aa21.81■■□□□ 1.08
SYNE4-207ENST00000505054 DPY19L2Q6NUT2 758 aa21.81■■□□□ 1.08
SYNE4-207ENST00000505054 NPM2Q86SE8 214 aaKnown RBP21.81■■□□□ 1.08
SYNE4-207ENST00000505054 CNBD1Q8NA66 436 aa21.81■■□□□ 1.08
SYNE4-207ENST00000505054 ELL2O00472 640 aaPredicted RBP21.8■■□□□ 1.08
SYNE4-207ENST00000505054 C21orf2O43822 256 aa21.8■■□□□ 1.08
SYNE4-207ENST00000505054 CAMTA2O94983 1202 aa21.8■■□□□ 1.08
SYNE4-207ENST00000505054 PROSER3Q2NL68 480 aa21.8■■□□□ 1.08
SYNE4-207ENST00000505054 HDGFL1Q5TGJ6 251 aa21.8■■□□□ 1.08
SYNE4-207ENST00000505054 LRP10Q7Z4F1 713 aa21.8■■□□□ 1.08
SYNE4-207ENST00000505054 TSPYL6Q8N831 410 aa21.8■■□□□ 1.08
SYNE4-207ENST00000505054 MYL6BP14649 208 aa21.79■■□□□ 1.08
SYNE4-207ENST00000505054 ST5P78524 1137 aa21.79■■□□□ 1.08
SYNE4-207ENST00000505054 ERFEQ4G0M1 354 aa21.79■■□□□ 1.08
SYNE4-207ENST00000505054 COL13A1Q5TAT6 717 aaPredicted RBP21.79■■□□□ 1.08
SYNE4-207ENST00000505054 SETDB2Q96T68 719 aa21.79■■□□□ 1.08
SYNE4-207ENST00000505054 POTECB2RU33 542 aa21.78■■□□□ 1.08
SYNE4-207ENST00000505054 NPHP1O15259 732 aa21.78■■□□□ 1.08
SYNE4-207ENST00000505054 ANXA1P04083 346 aa21.78■■□□□ 1.08
SYNE4-207ENST00000505054 DZIP3Q86Y13 1208 aaKnown RBP21.78■■□□□ 1.08
SYNE4-207ENST00000505054 CCDC24Q8N4L8 307 aa21.78■■□□□ 1.08
SYNE4-207ENST00000505054 TAOK3Q9H2K8 898 aa21.78■■□□□ 1.08
SYNE4-207ENST00000505054 MYH16Q9H6N6 1097 aa21.78■■□□□ 1.08
SYNE4-207ENST00000505054 ZNF219Q9P2Y4 722 aaPredicted RBP21.78■■□□□ 1.08
SYNE4-207ENST00000505054 GOLGA2Q08379 1002 aa21.77■■□□□ 1.08
SYNE4-207ENST00000505054 STYK1Q6J9G0 422 aa21.77■■□□□ 1.08
SYNE4-207ENST00000505054 CNKSR1Q969H4 720 aa21.77■■□□□ 1.08
SYNE4-207ENST00000505054 CHPF2Q9P2E5 772 aa21.77■■□□□ 1.08
SYNE4-207ENST00000505054 SCN4AP35499 1836 aa21.76■■□□□ 1.07
SYNE4-207ENST00000505054 EXOSC9Q06265 439 aaKnown RBP21.76■■□□□ 1.07
SYNE4-207ENST00000505054 SOGA3Q5TF21 947 aa21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms