RNA–Protein interactions for RNA: ENST00000503492.5

PCDH1-204, Transcript of protocadherin 1, humanhuman

TSL 5 BASIC

Gene PCDH1, Length 2,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-204ENST00000503492 MYD88Q99836 296 aa27.5■■□□□ 1.99
PCDH1-204ENST00000503492 CARD10Q9BWT7 1032 aa27.5■■□□□ 1.99
PCDH1-204ENST00000503492 ANKRD13DQ6ZTN6 518 aa27.49■■□□□ 1.99
PCDH1-204ENST00000503492 USP42Q9H9J4 1324 aaKnown RBP27.48■■□□□ 1.99
PCDH1-204ENST00000503492 MAP4K4O95819 1239 aaPredicted RBP27.48■■□□□ 1.99
PCDH1-204ENST00000503492 GCKRQ14397 625 aa27.48■■□□□ 1.99
PCDH1-204ENST00000503492 NHSL1Q5SYE7 1610 aa27.48■■□□□ 1.99
PCDH1-204ENST00000503492 IL2RBP14784 551 aa27.48■■□□□ 1.99
PCDH1-204ENST00000503492 STRN4Q9NRL3 753 aa27.47■■□□□ 1.99
PCDH1-204ENST00000503492 LAMB4A4D0S4 1761 aa27.47■■□□□ 1.99
PCDH1-204ENST00000503492 AK9Q5TCS8 1911 aa27.46■■□□□ 1.99
PCDH1-204ENST00000503492 CLASRPQ8N2M8 674 aaKnown RBP27.46■■□□□ 1.99
PCDH1-204ENST00000503492 NKX1-1Q15270 411 aaPredicted RBP27.45■■□□□ 1.99
PCDH1-204ENST00000503492 ERC1Q8IUD2 1116 aa27.45■■□□□ 1.99
PCDH1-204ENST00000503492 ERVV-2B6SEH9 535 aa27.45■■□□□ 1.98
PCDH1-204ENST00000503492 IL25Q9H293 177 aa27.45■■□□□ 1.98
PCDH1-204ENST00000503492 ANO2Q9NQ90 1003 aa27.45■■□□□ 1.98
PCDH1-204ENST00000503492 TTC41PQ6P2S7 1318 aa27.45■■□□□ 1.98
PCDH1-204ENST00000503492 SHANK3Q9BYB0 1731 aa27.44■■□□□ 1.98
PCDH1-204ENST00000503492 RAB3GAP1Q15042 981 aa27.44■■□□□ 1.98
PCDH1-204ENST00000503492 ST18O60284 1047 aa27.43■■□□□ 1.98
PCDH1-204ENST00000503492 EVA1CP58658 441 aa27.43■■□□□ 1.98
PCDH1-204ENST00000503492 TNPO1Q92973 898 aaKnown RBP27.43■■□□□ 1.98
PCDH1-204ENST00000503492 EPHA10Q5JZY3 1008 aa27.42■■□□□ 1.98
PCDH1-204ENST00000503492 DDX54Q8TDD1 881 aaKnown RBP27.42■■□□□ 1.98
PCDH1-204ENST00000503492 UBR2Q8IWV8 1755 aa27.42■■□□□ 1.98
PCDH1-204ENST00000503492 ARFGEF2Q9Y6D5 1785 aa27.42■■□□□ 1.98
PCDH1-204ENST00000503492 SASH1O94885 1247 aa27.42■■□□□ 1.98
PCDH1-204ENST00000503492 CNTROBQ8N137 903 aa27.42■■□□□ 1.98
PCDH1-204ENST00000503492 GLRX3O76003 335 aaKnown RBP27.41■■□□□ 1.98
PCDH1-204ENST00000503492 PALD1Q9ULE6 856 aa27.41■■□□□ 1.98
PCDH1-204ENST00000503492 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP27.41■■□□□ 1.98
PCDH1-204ENST00000503492 NBPF26B4DH59 902 aa27.4■■□□□ 1.98
PCDH1-204ENST00000503492 G3BP1Q13283 466 aaKnown RBP eCLIP27.4■■□□□ 1.98
PCDH1-204ENST00000503492 NBPF14Q5TI25 921 aa27.4■■□□□ 1.98
PCDH1-204ENST00000503492 NBPF10Q6P3W6 841 aaKnown RBP27.4■■□□□ 1.98
PCDH1-204ENST00000503492 NBPF15Q8N660 670 aa27.4■■□□□ 1.98
PCDH1-204ENST00000503492 MCCP23508 829 aa27.4■■□□□ 1.98
PCDH1-204ENST00000503492 AFDNP55196 1824 aaKnown RBP27.39■■□□□ 1.98
PCDH1-204ENST00000503492 KCPQ6ZWJ8 1503 aa27.39■■□□□ 1.98
PCDH1-204ENST00000503492 IFIT2P09913 472 aaKnown RBP27.39■■□□□ 1.98
PCDH1-204ENST00000503492 PLBD2Q8NHP8 589 aa27.39■■□□□ 1.98
PCDH1-204ENST00000503492 JARID2Q92833 1246 aaPredicted RBP27.39■■□□□ 1.98
PCDH1-204ENST00000503492 ECHDC1Q9NTX5 307 aa27.39■■□□□ 1.98
PCDH1-204ENST00000503492 PAPPAQ13219 1627 aa27.39■■□□□ 1.97
PCDH1-204ENST00000503492 ERBB4Q15303 1308 aa27.38■■□□□ 1.97
PCDH1-204ENST00000503492 AACSQ86V21 672 aa27.38■■□□□ 1.97
PCDH1-204ENST00000503492 ATP5J2-PTCD1G3V325 749 aa27.37■■□□□ 1.97
PCDH1-204ENST00000503492 PTCD1O75127 700 aaKnown RBP27.37■■□□□ 1.97
PCDH1-204ENST00000503492 ANAPC15P60006 121 aa27.37■■□□□ 1.97
PCDH1-204ENST00000503492 SGSM2O43147 1006 aa27.37■■□□□ 1.97
PCDH1-204ENST00000503492 KLHDC4Q8TBB5 520 aa27.37■■□□□ 1.97
PCDH1-204ENST00000503492 EPB41L2O43491 1005 aaKnown RBP27.36■■□□□ 1.97
PCDH1-204ENST00000503492 EAF2Q96CJ1 260 aaPredicted RBP27.36■■□□□ 1.97
PCDH1-204ENST00000503492 SIL1Q9H173 461 aa27.36■■□□□ 1.97
PCDH1-204ENST00000503492 NEK4P51957 841 aa27.36■■□□□ 1.97
PCDH1-204ENST00000503492 IL17RAQ96F46 866 aa27.36■■□□□ 1.97
PCDH1-204ENST00000503492 GPATCH3Q96I76 525 aa27.35■■□□□ 1.97
PCDH1-204ENST00000503492 UBE3BQ7Z3V4 1068 aa27.35■■□□□ 1.97
PCDH1-204ENST00000503492 DDX11L8A8MPP1 907 aa27.34■■□□□ 1.97
PCDH1-204ENST00000503492 A1BGP04217 495 aa27.34■■□□□ 1.97
PCDH1-204ENST00000503492 TNS2Q63HR2 1409 aa27.34■■□□□ 1.97
PCDH1-204ENST00000503492 COL15A1P39059 1388 aa27.33■■□□□ 1.97
PCDH1-204ENST00000503492 SSFA2P28290 1259 aa27.33■■□□□ 1.97
PCDH1-204ENST00000503492 TTLL7Q6ZT98 887 aa27.33■■□□□ 1.97
PCDH1-204ENST00000503492 TOGARAM1Q9Y4F4 1720 aa27.33■■□□□ 1.97
PCDH1-204ENST00000503492 A0A087WZG4 1122 aa27.33■■□□□ 1.96
PCDH1-204ENST00000503492 TRAK2O60296 914 aa27.32■■□□□ 1.96
PCDH1-204ENST00000503492 HSPA4P34932 840 aa27.32■■□□□ 1.96
PCDH1-204ENST00000503492 RFX5P48382 616 aaPredicted RBP27.32■■□□□ 1.96
PCDH1-204ENST00000503492 CASP7P55210 303 aa27.32■■□□□ 1.96
PCDH1-204ENST00000503492 RABL6Q3YEC7 729 aaPredicted RBP27.32■■□□□ 1.96
PCDH1-204ENST00000503492 GBP4Q96PP9 640 aa27.32■■□□□ 1.96
PCDH1-204ENST00000503492 CCDC8Q9H0W5 538 aaPredicted RBP27.32■■□□□ 1.96
PCDH1-204ENST00000503492 CWC27Q6UX04 472 aaKnown RBP27.31■■□□□ 1.96
PCDH1-204ENST00000503492 LSG1Q9H089 658 aaKnown RBP27.31■■□□□ 1.96
PCDH1-204ENST00000503492 COPRSQ9NQ92 184 aa27.31■■□□□ 1.96
PCDH1-204ENST00000503492 BTG4Q9NY30 223 aa27.31■■□□□ 1.96
PCDH1-204ENST00000503492 TLR7Q9NYK1 1049 aaKnown RBP27.31■■□□□ 1.96
PCDH1-204ENST00000503492 RAD50Q92878 1312 aa27.31■■□□□ 1.96
PCDH1-204ENST00000503492 ZGPATQ8N5A5 531 aaKnown RBP27.3■■□□□ 1.96
PCDH1-204ENST00000503492 NUP188Q5SRE5 1749 aa27.29■■□□□ 1.96
PCDH1-204ENST00000503492 PTPN12Q05209 780 aaKnown RBP27.29■■□□□ 1.96
PCDH1-204ENST00000503492 EVI5LQ96CN4 794 aa27.28■■□□□ 1.96
PCDH1-204ENST00000503492 CWC22Q9HCG8 908 aaKnown RBP27.28■■□□□ 1.96
PCDH1-204ENST00000503492 DIAPH3Q9NSV4 1193 aa27.28■■□□□ 1.96
PCDH1-204ENST00000503492 MCM2P49736 904 aa27.27■■□□□ 1.96
PCDH1-204ENST00000503492 TMX3Q96JJ7 454 aa27.27■■□□□ 1.96
PCDH1-204ENST00000503492 TMOD3Q9NYL9 352 aa27.27■■□□□ 1.96
PCDH1-204ENST00000503492 H7C1W4 665 aa27.26■■□□□ 1.95
PCDH1-204ENST00000503492 CLEC17AQ6ZS10 378 aa27.26■■□□□ 1.95
PCDH1-204ENST00000503492 CYP2E1P05181 493 aaPredicted RBP27.26■■□□□ 1.95
PCDH1-204ENST00000503492 UPF3BQ9BZI7 483 aaKnown RBP27.26■■□□□ 1.95
PCDH1-204ENST00000503492 NUCB2P80303 420 aa27.25■■□□□ 1.95
PCDH1-204ENST00000503492 KIAA1211Q6ZU35 1233 aa27.24■■□□□ 1.95
PCDH1-204ENST00000503492 RUFY2Q8WXA3 655 aa27.24■■□□□ 1.95
PCDH1-204ENST00000503492 ZBTB3Q9H5J0 574 aa27.24■■□□□ 1.95
PCDH1-204ENST00000503492 FOXO4P98177 505 aa27.23■■□□□ 1.95
PCDH1-204ENST00000503492 PKP1Q13835 747 aa27.23■■□□□ 1.95
PCDH1-204ENST00000503492 GZF1Q9H116 711 aaPredicted RBP27.23■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms