RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 ANXA1P04083 346 aa12.68□□□□□ -0.38
LIMCH1-205ENST00000503057 HSP90AB3PQ58FF7 597 aa12.68□□□□□ -0.38
LIMCH1-205ENST00000503057 CWC25Q9NXE8 425 aaPredicted RBP12.68□□□□□ -0.38
LIMCH1-205ENST00000503057 ANKRD13DQ6ZTN6 518 aa12.68□□□□□ -0.38
LIMCH1-205ENST00000503057 DDX11Q96FC9 970 aa12.68□□□□□ -0.38
LIMCH1-205ENST00000503057 IPO7O95373 1038 aaKnown RBP12.67□□□□□ -0.38
LIMCH1-205ENST00000503057 HOXB7P09629 217 aa12.67□□□□□ -0.38
LIMCH1-205ENST00000503057 KCNA6P17658 529 aa12.67□□□□□ -0.38
LIMCH1-205ENST00000503057 CADPS2Q86UW7 1296 aa12.67□□□□□ -0.38
LIMCH1-205ENST00000503057 FERMT3Q86UX7 667 aa12.67□□□□□ -0.38
LIMCH1-205ENST00000503057 CEP57L1Q8IYX8 460 aa12.67□□□□□ -0.38
LIMCH1-205ENST00000503057 WASF1Q92558 559 aa12.67□□□□□ -0.38
LIMCH1-205ENST00000503057 AOX1Q06278 1338 aa12.67□□□□□ -0.38
LIMCH1-205ENST00000503057 LMTK2Q8IWU2 1503 aa12.67□□□□□ -0.38
LIMCH1-205ENST00000503057 BRPF1P55201 1214 aaPredicted RBP12.67□□□□□ -0.38
LIMCH1-205ENST00000503057 IFIT5Q13325 482 aaKnown RBP12.67□□□□□ -0.38
LIMCH1-205ENST00000503057 TEX13AQ9BXU3 409 aaPredicted RBP12.67□□□□□ -0.38
LIMCH1-205ENST00000503057 KDM4AO75164 1064 aa12.66□□□□□ -0.38
LIMCH1-205ENST00000503057 CCAR2Q8N163 923 aaKnown RBP12.66□□□□□ -0.38
LIMCH1-205ENST00000503057 LINS1Q8NG48 757 aa12.66□□□□□ -0.38
LIMCH1-205ENST00000503057 DACH1Q9UI36 760 aa12.66□□□□□ -0.38
LIMCH1-205ENST00000503057 ZSCAN22P10073 491 aaPredicted RBP12.66□□□□□ -0.38
LIMCH1-205ENST00000503057 UBE2HP62256 183 aa12.66□□□□□ -0.38
LIMCH1-205ENST00000503057 G2E3Q7L622 706 aa12.66□□□□□ -0.38
LIMCH1-205ENST00000503057 UBE3BQ7Z3V4 1068 aa12.66□□□□□ -0.38
LIMCH1-205ENST00000503057 TRIM34Q9BYJ4 488 aa12.66□□□□□ -0.38
LIMCH1-205ENST00000503057 CHMLP26374 656 aa12.66□□□□□ -0.38
LIMCH1-205ENST00000503057 VPS53Q5VIR6 699 aa12.66□□□□□ -0.38
LIMCH1-205ENST00000503057 AIDAQ96BJ3 306 aa12.66□□□□□ -0.38
LIMCH1-205ENST00000503057 GPS2Q13227 327 aa12.66□□□□□ -0.38
LIMCH1-205ENST00000503057 LRSAM1Q6UWE0 723 aa12.66□□□□□ -0.38
LIMCH1-205ENST00000503057 CLSTN1O94985 981 aa12.65□□□□□ -0.38
LIMCH1-205ENST00000503057 IGHMBP2P38935 993 aaKnown RBP12.65□□□□□ -0.38
LIMCH1-205ENST00000503057 IDH1O75874 414 aaKnown RBP12.65□□□□□ -0.38
LIMCH1-205ENST00000503057 INTS4Q96HW7 963 aaKnown RBP12.65□□□□□ -0.38
LIMCH1-205ENST00000503057 PCMTD1Q96MG8 357 aaPredicted RBP12.65□□□□□ -0.38
LIMCH1-205ENST00000503057 RNMTO43148 476 aaKnown RBP12.65□□□□□ -0.38
LIMCH1-205ENST00000503057 XRCC6P12956 609 aaKnown RBP eCLIP12.65□□□□□ -0.38
LIMCH1-205ENST00000503057 MNS1Q8NEH6 495 aa12.65□□□□□ -0.38
LIMCH1-205ENST00000503057 XAGE3Q8WTP9 111 aa12.65□□□□□ -0.38
LIMCH1-205ENST00000503057 LRRC59Q96AG4 307 aaKnown RBP12.65□□□□□ -0.38
LIMCH1-205ENST00000503057 ARGLU1Q9NWB6 273 aaPredicted RBP12.65□□□□□ -0.38
LIMCH1-205ENST00000503057 UVSSAQ2YD98 709 aa12.65□□□□□ -0.38
LIMCH1-205ENST00000503057 CCDC70Q6NSX1 233 aa12.65□□□□□ -0.38
LIMCH1-205ENST00000503057 NPHP3Q7Z494 1330 aa12.65□□□□□ -0.39
LIMCH1-205ENST00000503057 TDO2P48775 406 aa12.65□□□□□ -0.39
LIMCH1-205ENST00000503057 CCDC85AQ96PX6 553 aaPredicted RBP12.65□□□□□ -0.39
LIMCH1-205ENST00000503057 NEK1Q96PY6 1258 aa12.65□□□□□ -0.39
LIMCH1-205ENST00000503057 DDX19AQ9NUU7 478 aaKnown RBP12.65□□□□□ -0.39
LIMCH1-205ENST00000503057 MCM5P33992 734 aa12.64□□□□□ -0.39
LIMCH1-205ENST00000503057 CDK12Q9NYV4 1490 aaPredicted RBP12.64□□□□□ -0.39
LIMCH1-205ENST00000503057 A0A0U1RQG5 324 aaPredicted RBP12.64□□□□□ -0.39
LIMCH1-205ENST00000503057 CAMK4Q16566 473 aa12.64□□□□□ -0.39
LIMCH1-205ENST00000503057 MEX3CQ5U5Q3 659 aaKnown RBP12.64□□□□□ -0.39
LIMCH1-205ENST00000503057 INO80Q9ULG1 1556 aaPredicted RBP12.64□□□□□ -0.39
LIMCH1-205ENST00000503057 CTAGE5O15320 804 aa12.64□□□□□ -0.39
LIMCH1-205ENST00000503057 CBFA2T2O43439 604 aa12.64□□□□□ -0.39
LIMCH1-205ENST00000503057 PDILTQ8N807 584 aa12.64□□□□□ -0.39
LIMCH1-205ENST00000503057 ATP5J2-PTCD1G3V325 749 aa12.64□□□□□ -0.39
LIMCH1-205ENST00000503057 GCP02774 474 aa12.64□□□□□ -0.39
LIMCH1-205ENST00000503057 TXLNAP40222 546 aa12.64□□□□□ -0.39
LIMCH1-205ENST00000503057 COPS6Q7L5N1 327 aa12.64□□□□□ -0.39
LIMCH1-205ENST00000503057 RBM27Q9P2N5 1060 aaKnown RBP12.64□□□□□ -0.39
LIMCH1-205ENST00000503057 PLEKHG1Q9ULL1 1385 aa12.63□□□□□ -0.39
LIMCH1-205ENST00000503057 PIP4K2AP48426 406 aaPredicted RBP12.63□□□□□ -0.39
LIMCH1-205ENST00000503057 LARP6Q9BRS8 491 aaKnown RBP12.63□□□□□ -0.39
LIMCH1-205ENST00000503057 PHAXQ9H814 394 aaKnown RBP12.63□□□□□ -0.39
LIMCH1-205ENST00000503057 METP08581 1390 aa12.63□□□□□ -0.39
LIMCH1-205ENST00000503057 ANKRD18BA2A2Z9 1011 aa12.63□□□□□ -0.39
LIMCH1-205ENST00000503057 UBAC1Q9BSL1 405 aa12.63□□□□□ -0.39
LIMCH1-205ENST00000503057 RBM8AQ9Y5S9 174 aaKnown RBP12.63□□□□□ -0.39
LIMCH1-205ENST00000503057 GOLIM4O00461 696 aa12.63□□□□□ -0.39
LIMCH1-205ENST00000503057 ZBTB3Q9H5J0 574 aa12.63□□□□□ -0.39
LIMCH1-205ENST00000503057 GDPD2Q9HCC8 539 aa12.63□□□□□ -0.39
LIMCH1-205ENST00000503057 UQCRHLA0A096LP55 91 aa12.63□□□□□ -0.39
LIMCH1-205ENST00000503057 SMTNL1A8MU46 457 aa12.63□□□□□ -0.39
LIMCH1-205ENST00000503057 UQCRHP07919 91 aa12.63□□□□□ -0.39
LIMCH1-205ENST00000503057 FILIP1LQ4L180 1135 aa12.63□□□□□ -0.39
LIMCH1-205ENST00000503057 RAD50Q92878 1312 aa12.63□□□□□ -0.39
LIMCH1-205ENST00000503057 SERPINC1P01008 464 aa12.62□□□□□ -0.39
LIMCH1-205ENST00000503057 ATP2B1P20020 1258 aa12.62□□□□□ -0.39
LIMCH1-205ENST00000503057 VSIG10Q8N0Z9 540 aa12.62□□□□□ -0.39
LIMCH1-205ENST00000503057 KIAA1210Q9ULL0 1709 aa12.62□□□□□ -0.39
LIMCH1-205ENST00000503057 TTF1Q15361 905 aaPredicted RBP12.62□□□□□ -0.39
LIMCH1-205ENST00000503057 NOC3LQ8WTT2 800 aaKnown RBP12.62□□□□□ -0.39
LIMCH1-205ENST00000503057 NOL7Q9UMY1 257 aaKnown RBP12.62□□□□□ -0.39
LIMCH1-205ENST00000503057 ZNF213O14771 459 aa12.62□□□□□ -0.39
LIMCH1-205ENST00000503057 LRP2BPQ9P2M1 347 aa12.62□□□□□ -0.39
LIMCH1-205ENST00000503057 OTUD7AQ8TE49 926 aaPredicted RBP12.62□□□□□ -0.39
LIMCH1-205ENST00000503057 NUP133Q8WUM0 1156 aa12.62□□□□□ -0.39
LIMCH1-205ENST00000503057 C8orf76Q96K31 380 aa12.61□□□□□ -0.39
LIMCH1-205ENST00000503057 ANO10Q9NW15 660 aa12.61□□□□□ -0.39
LIMCH1-205ENST00000503057 ZNF652Q9Y2D9 606 aa12.61□□□□□ -0.39
LIMCH1-205ENST00000503057 USP19O94966 1318 aa12.61□□□□□ -0.39
LIMCH1-205ENST00000503057 PPRC1Q5VV67 1664 aaKnown RBP12.61□□□□□ -0.39
LIMCH1-205ENST00000503057 SLC39A6Q13433 755 aa12.61□□□□□ -0.39
LIMCH1-205ENST00000503057 SLC5A1P13866 664 aa12.61□□□□□ -0.39
LIMCH1-205ENST00000503057 ZSCAN16Q9H4T2 348 aaPredicted RBP12.61□□□□□ -0.39
LIMCH1-205ENST00000503057 CAMSAP1Q5T5Y3 1602 aa12.61□□□□□ -0.39
LIMCH1-205ENST00000503057 MAP3K12Q12852 859 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms