RNA–Protein interactions for RNA: ENST00000502315.1

SH3RF1-202, Transcript of SH3 domain containing ring finger 1, humanhuman

TSL 4

Gene SH3RF1, Length 487 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-202ENST00000502315 TPTE2Q6XPS3 522 aa9.55□□□□□ -0.88
SH3RF1-202ENST00000502315 PNISRQ8TF01 805 aaKnown RBP9.55□□□□□ -0.88
SH3RF1-202ENST00000502315 RSPH6AQ9H0K4 717 aa9.55□□□□□ -0.88
SH3RF1-202ENST00000502315 AFDNP55196 1824 aaKnown RBP9.54□□□□□ -0.88
SH3RF1-202ENST00000502315 NFKBIEO00221 500 aa9.54□□□□□ -0.88
SH3RF1-202ENST00000502315 CAMTA2O94983 1202 aa9.54□□□□□ -0.88
SH3RF1-202ENST00000502315 NEFMP07197 916 aa9.54□□□□□ -0.88
SH3RF1-202ENST00000502315 SRGNP10124 158 aa9.54□□□□□ -0.88
SH3RF1-202ENST00000502315 ALDH1B1P30837 517 aa9.54□□□□□ -0.88
SH3RF1-202ENST00000502315 DZIP3Q86Y13 1208 aaKnown RBP9.54□□□□□ -0.88
SH3RF1-202ENST00000502315 CNBD1Q8NA66 436 aa9.54□□□□□ -0.88
SH3RF1-202ENST00000502315 IQCA1LA6NCM1 817 aa9.53□□□□□ -0.88
SH3RF1-202ENST00000502315 PRKAR2BP31323 418 aa9.53□□□□□ -0.88
SH3RF1-202ENST00000502315 TAF7Q15545 349 aaPredicted RBP9.53□□□□□ -0.88
SH3RF1-202ENST00000502315 ERFEQ4G0M1 354 aa9.53□□□□□ -0.88
SH3RF1-202ENST00000502315 CC2D2BQ6DHV5 1058 aa9.53□□□□□ -0.88
SH3RF1-202ENST00000502315 RTKN2Q8IZC4 609 aa9.53□□□□□ -0.88
SH3RF1-202ENST00000502315 ZNF622Q969S3 477 aaKnown RBP eCLIP9.53□□□□□ -0.88
SH3RF1-202ENST00000502315 TAOK3Q9H2K8 898 aa9.53□□□□□ -0.88
SH3RF1-202ENST00000502315 VIRMAQ69YN4 1812 aaKnown RBP9.53□□□□□ -0.88
SH3RF1-202ENST00000502315 WDR90Q96KV7 1748 aa9.53□□□□□ -0.88
SH3RF1-202ENST00000502315 SIPA1L3O60292 1781 aaPredicted RBP9.52□□□□□ -0.88
SH3RF1-202ENST00000502315 ERVV-1B6SEH8 477 aa9.52□□□□□ -0.89
SH3RF1-202ENST00000502315 NPHP1O15259 732 aa9.52□□□□□ -0.89
SH3RF1-202ENST00000502315 A1BGP04217 495 aa9.52□□□□□ -0.89
SH3RF1-202ENST00000502315 NPR1P16066 1061 aa9.52□□□□□ -0.89
SH3RF1-202ENST00000502315 RASSF7Q02833 373 aa9.52□□□□□ -0.89
SH3RF1-202ENST00000502315 L3MBTL3Q96JM7 780 aaPredicted RBP9.52□□□□□ -0.89
SH3RF1-202ENST00000502315 TBC1D2BQ9UPU7 963 aa9.52□□□□□ -0.89
SH3RF1-202ENST00000502315 SCN7AQ01118 1682 aa9.51□□□□□ -0.89
SH3RF1-202ENST00000502315 C21orf2O43822 256 aa9.51□□□□□ -0.89
SH3RF1-202ENST00000502315 CCDC93Q567U6 631 aa9.51□□□□□ -0.89
SH3RF1-202ENST00000502315 BICDL1Q6ZP65 573 aa9.51□□□□□ -0.89
SH3RF1-202ENST00000502315 C7orf43Q8WVR3 580 aa9.51□□□□□ -0.89
SH3RF1-202ENST00000502315 PHACTR3Q96KR7 559 aa9.51□□□□□ -0.89
SH3RF1-202ENST00000502315 NYXQ9GZU5 481 aa9.51□□□□□ -0.89
SH3RF1-202ENST00000502315 VPS33BQ9H267 617 aa9.51□□□□□ -0.89
SH3RF1-202ENST00000502315 CREBZFQ9NS37 354 aa9.51□□□□□ -0.89
SH3RF1-202ENST00000502315 BABAM1Q9NWV8 329 aa9.51□□□□□ -0.89
SH3RF1-202ENST00000502315 USP16Q9Y5T5 823 aa9.51□□□□□ -0.89
SH3RF1-202ENST00000502315 POTECB2RU33 542 aa9.5□□□□□ -0.89
SH3RF1-202ENST00000502315 U2AF1L5P0DN76 240 aaPredicted RBP9.5□□□□□ -0.89
SH3RF1-202ENST00000502315 PPP2R1AP30153 589 aa9.5□□□□□ -0.89
SH3RF1-202ENST00000502315 PRELPP51888 382 aa9.5□□□□□ -0.89
SH3RF1-202ENST00000502315 U2AF1Q01081 240 aaKnown RBP eCLIP9.5□□□□□ -0.89
SH3RF1-202ENST00000502315 POLA2Q14181 598 aa9.5□□□□□ -0.89
SH3RF1-202ENST00000502315 CHADLQ6NUI6 762 aa9.5□□□□□ -0.89
SH3RF1-202ENST00000502315 PRPF40BQ6NWY9 871 aaKnown RBP9.5□□□□□ -0.89
SH3RF1-202ENST00000502315 NBPF5PQ86XG9 351 aaPredicted RBP9.5□□□□□ -0.89
SH3RF1-202ENST00000502315 FER1L6Q2WGJ9 1857 aa9.5□□□□□ -0.89
SH3RF1-202ENST00000502315 DICER1Q9UPY3 1922 aaKnown RBP9.5□□□□□ -0.89
SH3RF1-202ENST00000502315 ERBB4Q15303 1308 aa9.5□□□□□ -0.89
SH3RF1-202ENST00000502315 IBTKQ9P2D0 1353 aaPredicted RBP9.5□□□□□ -0.89
SH3RF1-202ENST00000502315 FKBP4Q02790 459 aaKnown RBP eCLIP9.49□□□□□ -0.89
SH3RF1-202ENST00000502315 PNMA8AQ86V59 439 aaPredicted RBP9.49□□□□□ -0.89
SH3RF1-202ENST00000502315 LDHDQ86WU2 507 aa9.49□□□□□ -0.89
SH3RF1-202ENST00000502315 PSMD1Q99460 953 aa9.49□□□□□ -0.89
SH3RF1-202ENST00000502315 RIC1Q4ADV7 1423 aa9.48□□□□□ -0.89
SH3RF1-202ENST00000502315 CRY2Q49AN0 593 aa9.48□□□□□ -0.89
SH3RF1-202ENST00000502315 NIP7Q9Y221 180 aaKnown RBP eCLIP9.48□□□□□ -0.89
SH3RF1-202ENST00000502315 ZNF330Q9Y3S2 320 aaPredicted RBP9.48□□□□□ -0.89
SH3RF1-202ENST00000502315 ARFGEF2Q9Y6D5 1785 aa9.47□□□□□ -0.89
SH3RF1-202ENST00000502315 ANKRD31Q8N7Z5 1873 aa9.47□□□□□ -0.89
SH3RF1-202ENST00000502315 FZD9O00144 591 aa9.47□□□□□ -0.89
SH3RF1-202ENST00000502315 HOXA10P31260 410 aaPredicted RBP9.47□□□□□ -0.89
SH3RF1-202ENST00000502315 RNF123Q5XPI4 1314 aa9.47□□□□□ -0.89
SH3RF1-202ENST00000502315 BCORQ6W2J9 1755 aa9.47□□□□□ -0.89
SH3RF1-202ENST00000502315 NBPF26B4DH59 902 aa9.46□□□□□ -0.9
SH3RF1-202ENST00000502315 KCNQ3O43525 872 aa9.46□□□□□ -0.9
SH3RF1-202ENST00000502315 GTF2E1P29083 439 aaPredicted RBP9.46□□□□□ -0.9
SH3RF1-202ENST00000502315 NBPF10Q6P3W6 841 aaKnown RBP9.46□□□□□ -0.9
SH3RF1-202ENST00000502315 MCM10Q7L590 875 aa9.46□□□□□ -0.9
SH3RF1-202ENST00000502315 GPC2Q8N158 579 aa9.46□□□□□ -0.9
SH3RF1-202ENST00000502315 NBPF15Q8N660 670 aa9.46□□□□□ -0.9
SH3RF1-202ENST00000502315 CRAMP1Q96RY5 1269 aa9.46□□□□□ -0.9
SH3RF1-202ENST00000502315 SCN4AP35499 1836 aa9.46□□□□□ -0.9
SH3RF1-202ENST00000502315 MAP3K15Q6ZN16 1313 aa9.46□□□□□ -0.9
SH3RF1-202ENST00000502315 TIAM2Q8IVF5 1701 aa9.45□□□□□ -0.9
SH3RF1-202ENST00000502315 CCDC88AQ3V6T2 1871 aa9.45□□□□□ -0.9
SH3RF1-202ENST00000502315 DDNO94850 711 aaPredicted RBP9.45□□□□□ -0.9
SH3RF1-202ENST00000502315 PARP10Q53GL7 1025 aa9.45□□□□□ -0.9
SH3RF1-202ENST00000502315 KIF6Q6ZMV9 814 aa9.45□□□□□ -0.9
SH3RF1-202ENST00000502315 JDP2Q8WYK2 163 aa9.45□□□□□ -0.9
SH3RF1-202ENST00000502315 PLEKHF1Q96S99 279 aa9.45□□□□□ -0.9
SH3RF1-202ENST00000502315 TAF1DQ9H5J8 278 aaPredicted RBP9.45□□□□□ -0.9
SH3RF1-202ENST00000502315 HACL1Q9UJ83 578 aa9.45□□□□□ -0.9
SH3RF1-202ENST00000502315 PASKQ96RG2 1323 aa9.45□□□□□ -0.9
SH3RF1-202ENST00000502315 IARSP41252 1262 aaKnown RBP9.44□□□□□ -0.9
SH3RF1-202ENST00000502315 EIF4A1P60842 406 aaKnown RBP9.44□□□□□ -0.9
SH3RF1-202ENST00000502315 LMOD3Q0VAK6 560 aa9.44□□□□□ -0.9
SH3RF1-202ENST00000502315 NFE2L2Q16236 605 aa9.44□□□□□ -0.9
SH3RF1-202ENST00000502315 SLC10A5Q5PT55 438 aa9.44□□□□□ -0.9
SH3RF1-202ENST00000502315 GIGYF2Q6Y7W6 1299 aaKnown RBP9.44□□□□□ -0.9
SH3RF1-202ENST00000502315 PPP1R42Q7Z4L9 355 aa9.44□□□□□ -0.9
SH3RF1-202ENST00000502315 TMX4Q9H1E5 349 aaPredicted RBP9.44□□□□□ -0.9
SH3RF1-202ENST00000502315 PRDM10Q9NQV6 1147 aa9.44□□□□□ -0.9
SH3RF1-202ENST00000502315 SLX4Q8IY92 1834 aa9.44□□□□□ -0.9
SH3RF1-202ENST00000502315 CNTNAP1P78357 1384 aa9.43□□□□□ -0.9
SH3RF1-202ENST00000502315 TMEM88BA6NKF7 163 aa9.43□□□□□ -0.9
SH3RF1-202ENST00000502315 ITGBL1O95965 494 aaPredicted RBP9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms