RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 POTEJP0CG39 1038 aa19.79■□□□□ 0.76
TRAF4-212ENST00000498540 PIP4K2AP48426 406 aaPredicted RBP19.79■□□□□ 0.76
TRAF4-212ENST00000498540 NPC1L1Q9UHC9 1359 aa19.79■□□□□ 0.76
TRAF4-212ENST00000498540 NPHP1O15259 732 aa19.78■□□□□ 0.76
TRAF4-212ENST00000498540 DDNO94850 711 aaPredicted RBP19.78■□□□□ 0.76
TRAF4-212ENST00000498540 SRGNP10124 158 aa19.78■□□□□ 0.76
TRAF4-212ENST00000498540 ST5P78524 1137 aa19.78■□□□□ 0.76
TRAF4-212ENST00000498540 STYK1Q6J9G0 422 aa19.78■□□□□ 0.76
TRAF4-212ENST00000498540 DZIP3Q86Y13 1208 aaKnown RBP19.78■□□□□ 0.76
TRAF4-212ENST00000498540 CNKSR1Q969H4 720 aa19.78■□□□□ 0.76
TRAF4-212ENST00000498540 PHACTR3Q96KR7 559 aa19.78■□□□□ 0.76
TRAF4-212ENST00000498540 BTBD11A6QL63 1104 aa19.77■□□□□ 0.76
TRAF4-212ENST00000498540 CHADLQ6NUI6 762 aa19.77■□□□□ 0.76
TRAF4-212ENST00000498540 NPM2Q86SE8 214 aaKnown RBP19.77■□□□□ 0.76
TRAF4-212ENST00000498540 PRAMEF22A3QJZ6 481 aa19.76■□□□□ 0.75
TRAF4-212ENST00000498540 MASTLQ96GX5 879 aa19.76■□□□□ 0.75
TRAF4-212ENST00000498540 USP16Q9Y5T5 823 aa19.76■□□□□ 0.75
TRAF4-212ENST00000498540 PRKAR2BP31323 418 aa19.75■□□□□ 0.75
TRAF4-212ENST00000498540 RSPH6AQ9H0K4 717 aa19.75■□□□□ 0.75
TRAF4-212ENST00000498540 CREBZFQ9NS37 354 aa19.75■□□□□ 0.75
TRAF4-212ENST00000498540 SCN4AP35499 1836 aa19.74■□□□□ 0.75
TRAF4-212ENST00000498540 SOGA3Q5TF21 947 aa19.74■□□□□ 0.75
TRAF4-212ENST00000498540 MKRN1Q9UHC7 482 aaKnown RBP19.74■□□□□ 0.75
TRAF4-212ENST00000498540 NBPF5PQ86XG9 351 aaPredicted RBP19.73■□□□□ 0.75
TRAF4-212ENST00000498540 C7orf43Q8WVR3 580 aa19.73■□□□□ 0.75
TRAF4-212ENST00000498540 CLEC4GQ6UXB4 293 aa19.71■□□□□ 0.75
TRAF4-212ENST00000498540 CCDC93Q567U6 631 aa19.7■□□□□ 0.74
TRAF4-212ENST00000498540 OLFM4Q6UX06 510 aa19.7■□□□□ 0.74
TRAF4-212ENST00000498540 MCM10Q7L590 875 aa19.7■□□□□ 0.74
TRAF4-212ENST00000498540 L3MBTL3Q96JM7 780 aaPredicted RBP19.7■□□□□ 0.74
TRAF4-212ENST00000498540 PASKQ96RG2 1323 aa19.7■□□□□ 0.74
TRAF4-212ENST00000498540 IQCA1LA6NCM1 817 aa19.69■□□□□ 0.74
TRAF4-212ENST00000498540 NBPF26B4DH59 902 aa19.69■□□□□ 0.74
TRAF4-212ENST00000498540 SNRPA1P09661 255 aaKnown RBP19.69■□□□□ 0.74
TRAF4-212ENST00000498540 NPR1P16066 1061 aa19.69■□□□□ 0.74
TRAF4-212ENST00000498540 NBPF10Q6P3W6 841 aaKnown RBP19.69■□□□□ 0.74
TRAF4-212ENST00000498540 LDHDQ86WU2 507 aa19.69■□□□□ 0.74
TRAF4-212ENST00000498540 NBPF15Q8N660 670 aa19.69■□□□□ 0.74
TRAF4-212ENST00000498540 TAF1DQ9H5J8 278 aaPredicted RBP19.69■□□□□ 0.74
TRAF4-212ENST00000498540 ZNF652Q9Y2D9 606 aa19.69■□□□□ 0.74
TRAF4-212ENST00000498540 ADAMTSL1Q8N6G6 1762 aa19.69■□□□□ 0.74
TRAF4-212ENST00000498540 ZNF541Q9H0D2 1346 aa19.69■□□□□ 0.74
TRAF4-212ENST00000498540 CNTNAP1P78357 1384 aa19.69■□□□□ 0.74
TRAF4-212ENST00000498540 LAMB4A4D0S4 1761 aa19.68■□□□□ 0.74
TRAF4-212ENST00000498540 KLRG2A4D1S0 409 aaPredicted RBP19.68■□□□□ 0.74
TRAF4-212ENST00000498540 CFAP53Q96M91 514 aa19.68■□□□□ 0.74
TRAF4-212ENST00000498540 ZNF277Q9NRM2 450 aaPredicted RBP19.68■□□□□ 0.74
TRAF4-212ENST00000498540 NIP7Q9Y221 180 aaKnown RBP eCLIP19.68■□□□□ 0.74
TRAF4-212ENST00000498540 FKBP4Q02790 459 aaKnown RBP eCLIP19.67■□□□□ 0.74
TRAF4-212ENST00000498540 FAM177BA6PVY3 158 aa19.66■□□□□ 0.74
TRAF4-212ENST00000498540 DCTN1Q14203 1278 aa19.66■□□□□ 0.74
TRAF4-212ENST00000498540 RTF1Q92541 710 aaKnown RBP19.66■□□□□ 0.74
TRAF4-212ENST00000498540 FOXN1O15353 648 aa19.65■□□□□ 0.74
TRAF4-212ENST00000498540 U2AF1L5P0DN76 240 aaPredicted RBP19.65■□□□□ 0.74
TRAF4-212ENST00000498540 U2AF1Q01081 240 aaKnown RBP eCLIP19.65■□□□□ 0.743e-7■■□□□ 12.8
TRAF4-212ENST00000498540 EAPPQ56P03 285 aaPredicted RBP19.65■□□□□ 0.74
TRAF4-212ENST00000498540 TPTE2Q6XPS3 522 aa19.65■□□□□ 0.74
TRAF4-212ENST00000498540 ITGBL1O95965 494 aaPredicted RBP19.64■□□□□ 0.73
TRAF4-212ENST00000498540 HLFQ16534 295 aa19.64■□□□□ 0.73
TRAF4-212ENST00000498540 NUDCQ9Y266 331 aa19.64■□□□□ 0.73
TRAF4-212ENST00000498540 SNED1Q8TER0 1413 aa19.63■□□□□ 0.73
TRAF4-212ENST00000498540 RGL2O15211 777 aa19.63■□□□□ 0.73
TRAF4-212ENST00000498540 HACL1Q9UJ83 578 aa19.63■□□□□ 0.73
TRAF4-212ENST00000498540 NUP98P52948 1817 aa19.62■□□□□ 0.73
TRAF4-212ENST00000498540 ABCC12Q96J65 1359 aa19.62■□□□□ 0.73
TRAF4-212ENST00000498540 RNF123Q5XPI4 1314 aa19.62■□□□□ 0.73
TRAF4-212ENST00000498540 TMEM88BA6NKF7 163 aa19.62■□□□□ 0.73
TRAF4-212ENST00000498540 EPHX2P34913 555 aa19.62■□□□□ 0.73
TRAF4-212ENST00000498540 IARSP41252 1262 aaKnown RBP19.62■□□□□ 0.73
TRAF4-212ENST00000498540 VEGFBP49765 207 aa19.62■□□□□ 0.73
TRAF4-212ENST00000498540 RTKN2Q8IZC4 609 aa19.62■□□□□ 0.73
TRAF4-212ENST00000498540 DLG5Q8TDM6 1919 aa19.62■□□□□ 0.73
TRAF4-212ENST00000498540 KDM3BQ7LBC6 1761 aa19.62■□□□□ 0.73
TRAF4-212ENST00000498540 COL4A5P29400 1685 aa19.62■□□□□ 0.73
TRAF4-212ENST00000498540 PPP2R1AP30153 589 aa19.61■□□□□ 0.73
TRAF4-212ENST00000498540 FZD9O00144 591 aa19.6■□□□□ 0.73
TRAF4-212ENST00000498540 SYNE4Q8N205 404 aa19.6■□□□□ 0.73
TRAF4-212ENST00000498540 MIS18AQ9NYP9 233 aa19.6■□□□□ 0.73
TRAF4-212ENST00000498540 CLEC11AQ9Y240 323 aa19.6■□□□□ 0.73
TRAF4-212ENST00000498540 LTBP1Q14766 1721 aa19.59■□□□□ 0.73
TRAF4-212ENST00000498540 HTATSF1O43719 755 aaKnown RBP19.59■□□□□ 0.73
TRAF4-212ENST00000498540 GTF2E1P29083 439 aaPredicted RBP19.59■□□□□ 0.73
TRAF4-212ENST00000498540 ALDH1B1P30837 517 aa19.59■□□□□ 0.73
TRAF4-212ENST00000498540 TAF7Q15545 349 aaPredicted RBP19.58■□□□□ 0.72
TRAF4-212ENST00000498540 CRY2Q49AN0 593 aa19.58■□□□□ 0.72
TRAF4-212ENST00000498540 MAP1SQ66K74 1059 aaPredicted RBP19.58■□□□□ 0.72
TRAF4-212ENST00000498540 NUTM1Q86Y26 1132 aa19.58■□□□□ 0.72
TRAF4-212ENST00000498540 PRDM10Q9NQV6 1147 aa19.58■□□□□ 0.72
TRAF4-212ENST00000498540 PNMA8AQ86V59 439 aaPredicted RBP19.57■□□□□ 0.72
TRAF4-212ENST00000498540 GPC2Q8N158 579 aa19.57■□□□□ 0.72
TRAF4-212ENST00000498540 NGEFQ8N5V2 710 aa19.57■□□□□ 0.72
TRAF4-212ENST00000498540 PSMD1Q99460 953 aa19.57■□□□□ 0.72
TRAF4-212ENST00000498540 CTCFP49711 727 aaPredicted RBP19.56■□□□□ 0.72
TRAF4-212ENST00000498540 SLC51AQ86UW1 340 aa19.56■□□□□ 0.72
TRAF4-212ENST00000498540 CNTROBQ8N137 903 aa19.56■□□□□ 0.72
TRAF4-212ENST00000498540 AIDAQ96BJ3 306 aa19.56■□□□□ 0.72
TRAF4-212ENST00000498540 NYXQ9GZU5 481 aa19.55■□□□□ 0.72
TRAF4-212ENST00000498540 WBP1LQ9NX94 342 aa19.55■□□□□ 0.72
TRAF4-212ENST00000498540 MAP3K15Q6ZN16 1313 aa19.54■□□□□ 0.72
TRAF4-212ENST00000498540 UBN2Q6ZU65 1347 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms