RNA–Protein interactions for RNA: ENST00000497089.1

HOXA9-206, Transcript of homeobox A9, humanhuman

TSL 1 (best)

Gene HOXA9, Length 1,393 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9-206ENST00000497089 FAM83GA6ND36 823 aa9.09□□□□□ -0.95
HOXA9-206ENST00000497089 TLL1O43897 1013 aa9.09□□□□□ -0.95
HOXA9-206ENST00000497089 AP1G2O75843 785 aa9.09□□□□□ -0.95
HOXA9-206ENST00000497089 SRPK2P78362 688 aaKnown RBP9.09□□□□□ -0.95
HOXA9-206ENST00000497089 RTL5Q5HYW3 569 aaPredicted RBP9.09□□□□□ -0.95
HOXA9-206ENST00000497089 PRM3Q9NNZ6 103 aa9.09□□□□□ -0.95
HOXA9-206ENST00000497089 SNRKQ9NRH2 765 aa9.09□□□□□ -0.95
HOXA9-206ENST00000497089 PHRF1Q9P1Y6 1649 aaKnown RBP9.09□□□□□ -0.95
HOXA9-206ENST00000497089 PPIP5K1Q6PFW1 1433 aa9.08□□□□□ -0.96
HOXA9-206ENST00000497089 EIF5BO60841 1220 aaKnown RBP9.08□□□□□ -0.96
HOXA9-206ENST00000497089 RETREG3Q86VR2 466 aa9.08□□□□□ -0.96
HOXA9-206ENST00000497089 SPSB2Q99619 263 aa9.08□□□□□ -0.96
HOXA9-206ENST00000497089 USB1Q9BQ65 265 aaKnown RBP9.08□□□□□ -0.96
HOXA9-206ENST00000497089 EVC2Q86UK5 1308 aa9.07□□□□□ -0.96
HOXA9-206ENST00000497089 TONSLQ96HA7 1378 aa9.07□□□□□ -0.96
HOXA9-206ENST00000497089 ADH1BP00325 375 aa9.07□□□□□ -0.96
HOXA9-206ENST00000497089 NKX2-3Q8TAU0 364 aa9.07□□□□□ -0.96
HOXA9-206ENST00000497089 YTHDC1Q96MU7 727 aaKnown RBP9.07□□□□□ -0.96
HOXA9-206ENST00000497089 SSH2Q76I76 1423 aa9.07□□□□□ -0.96
HOXA9-206ENST00000497089 USP19O94966 1318 aa9.07□□□□□ -0.96
HOXA9-206ENST00000497089 BRWD3Q6RI45 1802 aa9.06□□□□□ -0.96
HOXA9-206ENST00000497089 USP6P35125 1406 aa9.06□□□□□ -0.96
HOXA9-206ENST00000497089 ERICH6BQ5W0A0 696 aa9.06□□□□□ -0.96
HOXA9-206ENST00000497089 CABP1Q9NZU7 370 aa9.06□□□□□ -0.96
HOXA9-206ENST00000497089 CPDO75976 1380 aa9.05□□□□□ -0.96
HOXA9-206ENST00000497089 NRKQ7Z2Y5 1582 aa9.05□□□□□ -0.96
HOXA9-206ENST00000497089 AKAP12Q02952 1782 aa9.05□□□□□ -0.96
HOXA9-206ENST00000497089 TRAK2O60296 914 aa9.05□□□□□ -0.96
HOXA9-206ENST00000497089 MSS51Q4VC12 460 aa9.05□□□□□ -0.96
HOXA9-206ENST00000497089 IFFO2Q5TF58 517 aa9.05□□□□□ -0.96
HOXA9-206ENST00000497089 FAM160A2Q8N612 972 aaPredicted RBP9.05□□□□□ -0.96
HOXA9-206ENST00000497089 HELBQ8NG08 1087 aaPredicted RBP9.05□□□□□ -0.96
HOXA9-206ENST00000497089 BTG4Q9NY30 223 aa9.05□□□□□ -0.96
HOXA9-206ENST00000497089 KIAA0232Q92628 1395 aa9.05□□□□□ -0.96
HOXA9-206ENST00000497089 CPSF1Q10570 1443 aaKnown RBP9.04□□□□□ -0.96
HOXA9-206ENST00000497089 CCDC125Q86Z20 511 aa9.04□□□□□ -0.96
HOXA9-206ENST00000497089 WWC1Q8IX03 1113 aa9.04□□□□□ -0.96
HOXA9-206ENST00000497089 ABTB2Q8N961 1025 aa9.04□□□□□ -0.96
HOXA9-206ENST00000497089 PRR7Q8TB68 274 aa9.04□□□□□ -0.96
HOXA9-206ENST00000497089 TSC1Q92574 1164 aa9.04□□□□□ -0.96
HOXA9-206ENST00000497089 CARD11Q9BXL7 1154 aa9.04□□□□□ -0.96
HOXA9-206ENST00000497089 PRDM11Q9NQV5 511 aa9.04□□□□□ -0.96
HOXA9-206ENST00000497089 LMO7Q8WWI1 1683 aa9.03□□□□□ -0.96
HOXA9-206ENST00000497089 THSD7AQ9UPZ6 1657 aa9.03□□□□□ -0.96
HOXA9-206ENST00000497089 SLIT3O75094 1523 aa9.03□□□□□ -0.96
HOXA9-206ENST00000497089 CFAP99D6REC4 459 aa9.03□□□□□ -0.96
HOXA9-206ENST00000497089 USP17L8P0C7I0 530 aa9.03□□□□□ -0.96
HOXA9-206ENST00000497089 NLRP13Q86W25 1043 aa9.03□□□□□ -0.96
HOXA9-206ENST00000497089 SEPT12Q8IYM1 358 aa9.03□□□□□ -0.96
HOXA9-206ENST00000497089 POM121Q96HA1 1249 aa9.03□□□□□ -0.96
HOXA9-206ENST00000497089 PUS7Q96PZ0 661 aaKnown RBP9.03□□□□□ -0.96
HOXA9-206ENST00000497089 PLA2G2EQ9NZK7 142 aa9.03□□□□□ -0.96
HOXA9-206ENST00000497089 COG6Q9Y2V7 657 aa9.03□□□□□ -0.96
HOXA9-206ENST00000497089 SPATA31A5Q5VU36 1347 aa9.03□□□□□ -0.96
HOXA9-206ENST00000497089 SPATA31A7Q8IWB4 1347 aa9.03□□□□□ -0.96
HOXA9-206ENST00000497089 PIK3C2AO00443 1686 aa9.03□□□□□ -0.96
HOXA9-206ENST00000497089 GCP02774 474 aa9.02□□□□□ -0.97
HOXA9-206ENST00000497089 NUTM2GQ5VZR2 741 aa9.02□□□□□ -0.97
HOXA9-206ENST00000497089 MTMR14Q8NCE2 650 aa9.02□□□□□ -0.97
HOXA9-206ENST00000497089 SLC6A16Q9GZN6 736 aa9.02□□□□□ -0.97
HOXA9-206ENST00000497089 CAMTA1Q9Y6Y1 1673 aa9.02□□□□□ -0.97
HOXA9-206ENST00000497089 MON2Q7Z3U7 1717 aa9.02□□□□□ -0.97
HOXA9-206ENST00000497089 EP400Q96L91 3159 aa9.02□□□□□ -0.97
HOXA9-206ENST00000497089 ZC3H6P61129 1189 aaKnown RBP9.01□□□□□ -0.97
HOXA9-206ENST00000497089 DESI1Q6ICB0 168 aa9.01□□□□□ -0.97
HOXA9-206ENST00000497089 PRDM9Q9NQV7 894 aa9.01□□□□□ -0.97
HOXA9-206ENST00000497089 CCDC9Q9Y3X0 531 aaKnown RBP9.01□□□□□ -0.97
HOXA9-206ENST00000497089 BLMP54132 1417 aaPredicted RBP9.01□□□□□ -0.97
HOXA9-206ENST00000497089 USP54Q70EL1 1684 aa9.01□□□□□ -0.97
HOXA9-206ENST00000497089 MMP16P51512 607 aa9□□□□□ -0.97
HOXA9-206ENST00000497089 CHRNA2Q15822 529 aa9□□□□□ -0.97
HOXA9-206ENST00000497089 TESK2Q96S53 571 aa9□□□□□ -0.97
HOXA9-206ENST00000497089 SPATA31A1Q5TZJ5 1347 aa9□□□□□ -0.97
HOXA9-206ENST00000497089 TTC21BQ7Z4L5 1316 aa9□□□□□ -0.97
HOXA9-206ENST00000497089 TTC21AQ8NDW8 1320 aa9□□□□□ -0.97
HOXA9-206ENST00000497089 CD163L1Q9NR16 1453 aa9□□□□□ -0.97
HOXA9-206ENST00000497089 DXOO77932 396 aaKnown RBP8.99□□□□□ -0.97
HOXA9-206ENST00000497089 S1PR4O95977 384 aa8.99□□□□□ -0.97
HOXA9-206ENST00000497089 CTDSPL2Q05D32 466 aa8.99□□□□□ -0.97
HOXA9-206ENST00000497089 KRT27Q7Z3Y8 459 aa8.99□□□□□ -0.97
HOXA9-206ENST00000497089 GDPD2Q9HCC8 539 aa8.99□□□□□ -0.97
HOXA9-206ENST00000497089 AATKQ6ZMQ8 1374 aa8.99□□□□□ -0.97
HOXA9-206ENST00000497089 COL18A1P39060 1754 aa8.99□□□□□ -0.97
HOXA9-206ENST00000497089 COL5A2P05997 1499 aaPredicted RBP8.99□□□□□ -0.97
HOXA9-206ENST00000497089 JUNDP17535 347 aa8.99□□□□□ -0.97
HOXA9-206ENST00000497089 USP31Q70CQ4 1352 aa8.99□□□□□ -0.97
HOXA9-206ENST00000497089 KTN1Q86UP2 1357 aaKnown RBP8.99□□□□□ -0.97
HOXA9-206ENST00000497089 ARID3AQ99856 593 aa8.99□□□□□ -0.97
HOXA9-206ENST00000497089 NFAT5O94916 1531 aa8.98□□□□□ -0.97
HOXA9-206ENST00000497089 ABCC6O95255 1503 aa8.98□□□□□ -0.97
HOXA9-206ENST00000497089 NINLQ9Y2I6 1382 aa8.98□□□□□ -0.97
HOXA9-206ENST00000497089 ABL2P42684 1182 aa8.98□□□□□ -0.97
HOXA9-206ENST00000497089 KCNH5Q8NCM2 988 aa8.98□□□□□ -0.97
HOXA9-206ENST00000497089 ST20-MTHFSA0A0A6YYL1 179 aa8.97□□□□□ -0.97
HOXA9-206ENST00000497089 PPP1R18Q6NYC8 613 aa8.97□□□□□ -0.97
HOXA9-206ENST00000497089 LARP1Q6PKG0 1096 aaKnown RBP8.97□□□□□ -0.97
HOXA9-206ENST00000497089 UBE2Q2Q8WVN8 375 aa8.97□□□□□ -0.97
HOXA9-206ENST00000497089 THRAP3Q9Y2W1 955 aaKnown RBP8.97□□□□□ -0.97
HOXA9-206ENST00000497089 ZNF330Q9Y3S2 320 aaPredicted RBP8.97□□□□□ -0.97
HOXA9-206ENST00000497089 NDUFB9Q9Y6M9 179 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms