RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 PCF11O94913 1555 aaKnown RBP7.82□□□□□ -1.16
CSMD3-208ENST00000497026 HECW1Q76N89 1606 aa7.82□□□□□ -1.16
CSMD3-208ENST00000497026 A0A1B0GTH6 734 aa7.82□□□□□ -1.16
CSMD3-208ENST00000497026 SLURP2P0DP57 97 aa7.82□□□□□ -1.16
CSMD3-208ENST00000497026 LYPD4Q6UWN0 246 aa7.82□□□□□ -1.16
CSMD3-208ENST00000497026 PROSER2Q86WR7 435 aaPredicted RBP7.82□□□□□ -1.16
CSMD3-208ENST00000497026 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.82□□□□□ -1.16
CSMD3-208ENST00000497026 AIDAQ96BJ3 306 aa7.82□□□□□ -1.16
CSMD3-208ENST00000497026 GMCL1Q96IK5 515 aa7.82□□□□□ -1.16
CSMD3-208ENST00000497026 FMN1Q68DA7 1419 aa7.81□□□□□ -1.16
CSMD3-208ENST00000497026 NFATC2IPQ8NCF5 419 aa7.81□□□□□ -1.16
CSMD3-208ENST00000497026 TRERF1Q96PN7 1200 aa7.81□□□□□ -1.16
CSMD3-208ENST00000497026 COL17A1Q9UMD9 1497 aaPredicted RBP7.8□□□□□ -1.16
CSMD3-208ENST00000497026 MAGI3Q5TCQ9 1506 aa7.8□□□□□ -1.16
CSMD3-208ENST00000497026 MSTNO14793 375 aa7.8□□□□□ -1.16
CSMD3-208ENST00000497026 CSB-PGBD3P0DP91 1061 aa7.8□□□□□ -1.16
CSMD3-208ENST00000497026 SRSF11Q05519 484 aaKnown RBP7.8□□□□□ -1.16
CSMD3-208ENST00000497026 TBCELQ5QJ74 424 aa7.8□□□□□ -1.16
CSMD3-208ENST00000497026 PGBD3Q8N328 593 aa7.8□□□□□ -1.16
CSMD3-208ENST00000497026 MBIPQ9NS73 344 aa7.8□□□□□ -1.16
CSMD3-208ENST00000497026 PARP3Q9Y6F1 533 aa7.8□□□□□ -1.16
CSMD3-208ENST00000497026 USP17L3A6NCW0 530 aa7.79□□□□□ -1.16
CSMD3-208ENST00000497026 USP17L4A6NCW7 530 aa7.79□□□□□ -1.16
CSMD3-208ENST00000497026 A6NJY4 79 aa7.79□□□□□ -1.16
CSMD3-208ENST00000497026 USP17L2Q6R6M4 530 aa7.79□□□□□ -1.16
CSMD3-208ENST00000497026 USP17L1Q7RTZ2 530 aa7.79□□□□□ -1.16
CSMD3-208ENST00000497026 FNBP4Q8N3X1 1017 aaPredicted RBP7.79□□□□□ -1.16
CSMD3-208ENST00000497026 ZNF358Q9NW07 568 aa7.79□□□□□ -1.16
CSMD3-208ENST00000497026 CLIP1P30622 1438 aa7.79□□□□□ -1.16
CSMD3-208ENST00000497026 CD109Q6YHK3 1445 aa7.79□□□□□ -1.16
CSMD3-208ENST00000497026 TEX14Q8IWB6 1497 aa7.79□□□□□ -1.16
CSMD3-208ENST00000497026 TTC37Q6PGP7 1564 aa7.79□□□□□ -1.16
CSMD3-208ENST00000497026 MX2P20592 715 aa7.78□□□□□ -1.16
CSMD3-208ENST00000497026 GLMNQ92990 594 aa7.78□□□□□ -1.16
CSMD3-208ENST00000497026 SLC4A9Q96Q91 983 aa7.78□□□□□ -1.16
CSMD3-208ENST00000497026 NIFKQ9BYG3 293 aaKnown RBP7.78□□□□□ -1.16
CSMD3-208ENST00000497026 CABP1Q9NZU7 370 aa7.78□□□□□ -1.16
CSMD3-208ENST00000497026 KIAA1024Q9UPX6 916 aa7.78□□□□□ -1.16
CSMD3-208ENST00000497026 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP7.78□□□□□ -1.16
CSMD3-208ENST00000497026 ATP9BO43861 1147 aa7.78□□□□□ -1.16
CSMD3-208ENST00000497026 ARHGEF15O94989 841 aa7.78□□□□□ -1.16
CSMD3-208ENST00000497026 CELA2BP08218 269 aaPredicted RBP7.78□□□□□ -1.16
CSMD3-208ENST00000497026 CDK2AP1O14519 115 aa7.77□□□□□ -1.17
CSMD3-208ENST00000497026 LZTS3O60299 673 aaPredicted RBP7.77□□□□□ -1.17
CSMD3-208ENST00000497026 UBAP2LQ14157 1087 aaKnown RBP7.77□□□□□ -1.17
CSMD3-208ENST00000497026 EFHC2Q5JST6 749 aa7.77□□□□□ -1.17
CSMD3-208ENST00000497026 TNS4Q8IZW8 715 aa7.77□□□□□ -1.17
CSMD3-208ENST00000497026 TPCN2Q8NHX9 752 aa7.77□□□□□ -1.17
CSMD3-208ENST00000497026 ABHD17AQ96GS6 310 aa7.77□□□□□ -1.17
CSMD3-208ENST00000497026 PSMG3-AS1Q96PY0 264 aa7.77□□□□□ -1.17
CSMD3-208ENST00000497026 IQSEC3Q9UPP2 1182 aaPredicted RBP7.77□□□□□ -1.17
CSMD3-208ENST00000497026 CEP162Q5TB80 1403 aa7.77□□□□□ -1.17
CSMD3-208ENST00000497026 CASKIN1Q8WXD9 1431 aa7.77□□□□□ -1.17
CSMD3-208ENST00000497026 KIF14Q15058 1648 aa7.76□□□□□ -1.17
CSMD3-208ENST00000497026 BACH1O14867 736 aa7.76□□□□□ -1.17
CSMD3-208ENST00000497026 ZBTB7BO15156 539 aaPredicted RBP7.76□□□□□ -1.17
CSMD3-208ENST00000497026 ATP4AP20648 1035 aa7.76□□□□□ -1.17
CSMD3-208ENST00000497026 CLDN10P78369 228 aa7.76□□□□□ -1.17
CSMD3-208ENST00000497026 MAP3K10Q02779 954 aa7.76□□□□□ -1.17
CSMD3-208ENST00000497026 MTFR1Q15390 333 aa7.76□□□□□ -1.17
CSMD3-208ENST00000497026 ACDQ96AP0 544 aa7.76□□□□□ -1.17
CSMD3-208ENST00000497026 FYCO1Q9BQS8 1478 aa7.76□□□□□ -1.17
CSMD3-208ENST00000497026 TFIP11Q9UBB9 837 aaKnown RBP7.76□□□□□ -1.17
CSMD3-208ENST00000497026 MKRN1Q9UHC7 482 aaKnown RBP7.76□□□□□ -1.17
CSMD3-208ENST00000497026 ARSJQ5FYB0 599 aaPredicted RBP7.75□□□□□ -1.17
CSMD3-208ENST00000497026 CCDC102BQ68D86 513 aa7.75□□□□□ -1.17
CSMD3-208ENST00000497026 PLEKHM2Q8IWE5 1019 aa7.75□□□□□ -1.17
CSMD3-208ENST00000497026 ZNF295-AS1Q8N0V1 137 aa7.75□□□□□ -1.17
CSMD3-208ENST00000497026 ZNF594Q96JF6 807 aaPredicted RBP7.75□□□□□ -1.17
CSMD3-208ENST00000497026 CCDC18Q5T9S5 1454 aa7.74□□□□□ -1.17
CSMD3-208ENST00000497026 BNIP3LO60238 219 aa7.74□□□□□ -1.17
CSMD3-208ENST00000497026 TRIM50Q86XT4 487 aa7.74□□□□□ -1.17
CSMD3-208ENST00000497026 OGFOD1Q8N543 542 aa7.74□□□□□ -1.17
CSMD3-208ENST00000497026 ZDHHC1Q8WTX9 485 aa7.74□□□□□ -1.17
CSMD3-208ENST00000497026 CALR3Q96L12 384 aaKnown RBP7.74□□□□□ -1.17
CSMD3-208ENST00000497026 DNAAF2Q9NVR5 837 aaKnown RBP7.74□□□□□ -1.17
CSMD3-208ENST00000497026 SCHIP1Q9P0W5 487 aaPredicted RBP7.74□□□□□ -1.17
CSMD3-208ENST00000497026 FRMPD1Q5SYB0 1578 aa7.74□□□□□ -1.17
CSMD3-208ENST00000497026 ARAP3Q8WWN8 1544 aa7.73□□□□□ -1.17
CSMD3-208ENST00000497026 TROQ12816 1431 aaPredicted RBP7.73□□□□□ -1.17
CSMD3-208ENST00000497026 MYO5CQ9NQX4 1742 aa7.73□□□□□ -1.17
CSMD3-208ENST00000497026 A0A1W2PNR3 127 aa7.73□□□□□ -1.17
CSMD3-208ENST00000497026 LOC105371045A0A1W2PR82 267 aa7.73□□□□□ -1.17
CSMD3-208ENST00000497026 PLEKHD1A6NEE1 506 aa7.73□□□□□ -1.17
CSMD3-208ENST00000497026 TXLNAP40222 546 aa7.73□□□□□ -1.17
CSMD3-208ENST00000497026 CTBSQ01459 385 aa7.73□□□□□ -1.17
CSMD3-208ENST00000497026 SLC9A9Q8IVB4 645 aa7.73□□□□□ -1.17
CSMD3-208ENST00000497026 CFHR5Q9BXR6 569 aa7.73□□□□□ -1.17
CSMD3-208ENST00000497026 ZCCHC2Q9C0B9 1178 aaKnown RBP7.73□□□□□ -1.17
CSMD3-208ENST00000497026 CRISPLD1Q9H336 500 aa7.73□□□□□ -1.17
CSMD3-208ENST00000497026 PHF24Q9UPV7 400 aa7.73□□□□□ -1.17
CSMD3-208ENST00000497026 NEO1Q92859 1461 aa7.73□□□□□ -1.17
CSMD3-208ENST00000497026 SFI1A8K8P3 1242 aa7.72□□□□□ -1.17
CSMD3-208ENST00000497026 BCRP11274 1271 aa7.72□□□□□ -1.17
CSMD3-208ENST00000497026 NBPF1Q3BBV0 1214 aa7.72□□□□□ -1.17
CSMD3-208ENST00000497026 SH3PXD2AQ5TCZ1 1133 aa7.72□□□□□ -1.17
CSMD3-208ENST00000497026 ZNF232Q9UNY5 417 aa7.72□□□□□ -1.17
CSMD3-208ENST00000497026 NSFL1CQ9UNZ2 370 aaKnown RBP7.72□□□□□ -1.17
CSMD3-208ENST00000497026 RICTORQ6R327 1708 aa7.72□□□□□ -1.17
CSMD3-208ENST00000497026 CFAP74Q9C0B2 1584 aa7.71□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms