RNA–Protein interactions for RNA: ENST00000496653.4

LIMS1-213, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 4

Gene LIMS1, Length 626 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-213ENST00000496653 TM4SF1P30408 202 aa18.84■□□□□ 0.61
LIMS1-213ENST00000496653 HSP90AB3PQ58FF7 597 aa18.84■□□□□ 0.61
LIMS1-213ENST00000496653 NECTIN2Q92692 538 aa18.84■□□□□ 0.61
LIMS1-213ENST00000496653 SYT17Q9BSW7 474 aa18.84■□□□□ 0.61
LIMS1-213ENST00000496653 C10orf71Q711Q0 1435 aa18.83■□□□□ 0.61
LIMS1-213ENST00000496653 ATP10DQ9P241 1426 aa18.83■□□□□ 0.61
LIMS1-213ENST00000496653 POLRMTO00411 1230 aaKnown RBP18.83■□□□□ 0.6
LIMS1-213ENST00000496653 ELL2O00472 640 aaPredicted RBP18.83■□□□□ 0.6
LIMS1-213ENST00000496653 NPHP1O15259 732 aa18.83■□□□□ 0.6
LIMS1-213ENST00000496653 LRP10Q7Z4F1 713 aa18.83■□□□□ 0.6
LIMS1-213ENST00000496653 BCORQ6W2J9 1755 aa18.81■□□□□ 0.6
LIMS1-213ENST00000496653 DDX58O95786 925 aaKnown RBP18.81■□□□□ 0.6
LIMS1-213ENST00000496653 DDR1Q08345 913 aa18.81■□□□□ 0.6
LIMS1-213ENST00000496653 PROSER3Q2NL68 480 aa18.81■□□□□ 0.6
LIMS1-213ENST00000496653 TBC1D9BQ66K14 1250 aa18.81■□□□□ 0.6
LIMS1-213ENST00000496653 XAGE3Q8WTP9 111 aa18.81■□□□□ 0.6
LIMS1-213ENST00000496653 ZNF428Q96B54 188 aa18.81■□□□□ 0.6
LIMS1-213ENST00000496653 IBTKQ9P2D0 1353 aaPredicted RBP18.81■□□□□ 0.6
LIMS1-213ENST00000496653 SERPINB2P05120 415 aa18.8■□□□□ 0.6
LIMS1-213ENST00000496653 TGFB2P61812 414 aa18.8■□□□□ 0.6
LIMS1-213ENST00000496653 HNRNPUQ00839 825 aaKnown RBP eCLIP18.8■□□□□ 0.6
LIMS1-213ENST00000496653 EXOSC9Q06265 439 aaKnown RBP18.8■□□□□ 0.6
LIMS1-213ENST00000496653 GIGYF2Q6Y7W6 1299 aaKnown RBP18.8■□□□□ 0.6
LIMS1-213ENST00000496653 BICDL1Q6ZP65 573 aa18.8■□□□□ 0.6
LIMS1-213ENST00000496653 TTLL7Q6ZT98 887 aa18.8■□□□□ 0.6
LIMS1-213ENST00000496653 COPS6Q7L5N1 327 aa18.8■□□□□ 0.6
LIMS1-213ENST00000496653 TSPYL6Q8N831 410 aa18.8■□□□□ 0.6
LIMS1-213ENST00000496653 CNBD1Q8NA66 436 aa18.8■□□□□ 0.6
LIMS1-213ENST00000496653 PLBD2Q8NHP8 589 aa18.8■□□□□ 0.6
LIMS1-213ENST00000496653 NYXQ9GZU5 481 aa18.8■□□□□ 0.6
LIMS1-213ENST00000496653 ZBTB3Q9H5J0 574 aa18.8■□□□□ 0.6
LIMS1-213ENST00000496653 PDZRN3Q9UPQ7 1066 aa18.8■□□□□ 0.6
LIMS1-213ENST00000496653 NIP7Q9Y221 180 aaKnown RBP eCLIP18.8■□□□□ 0.6
LIMS1-213ENST00000496653 CT47B1P0C2W7 299 aaPredicted RBP18.79■□□□□ 0.6
LIMS1-213ENST00000496653 ST5P78524 1137 aa18.79■□□□□ 0.6
LIMS1-213ENST00000496653 SLFN5Q08AF3 891 aa18.79■□□□□ 0.6
LIMS1-213ENST00000496653 PARP10Q53GL7 1025 aa18.79■□□□□ 0.6
LIMS1-213ENST00000496653 ANXA1P04083 346 aa18.78■□□□□ 0.6
LIMS1-213ENST00000496653 AIMP1Q12904 312 aaKnown RBP18.78■□□□□ 0.6
LIMS1-213ENST00000496653 NBPF5PQ86XG9 351 aaPredicted RBP18.78■□□□□ 0.6
LIMS1-213ENST00000496653 SPINK5Q9NQ38 1064 aaPredicted RBP18.78■□□□□ 0.6
LIMS1-213ENST00000496653 RNF123Q5XPI4 1314 aa18.77■□□□□ 0.6
LIMS1-213ENST00000496653 TPTE2Q6XPS3 522 aa18.77■□□□□ 0.6
LIMS1-213ENST00000496653 ANKRD13DQ6ZTN6 518 aa18.77■□□□□ 0.6
LIMS1-213ENST00000496653 VAMP4O75379 141 aa18.76■□□□□ 0.59
LIMS1-213ENST00000496653 HLFQ16534 295 aa18.76■□□□□ 0.59
LIMS1-213ENST00000496653 ZBED9Q6R2W3 1325 aa18.75■□□□□ 0.59
LIMS1-213ENST00000496653 PPP1R42Q7Z4L9 355 aa18.75■□□□□ 0.59
LIMS1-213ENST00000496653 GTF2E1P29083 439 aaPredicted RBP18.74■□□□□ 0.59
LIMS1-213ENST00000496653 PDE6BP35913 854 aa18.74■□□□□ 0.59
LIMS1-213ENST00000496653 RIC3Q7Z5B4 369 aa18.74■□□□□ 0.59
LIMS1-213ENST00000496653 BRIP1Q9BX63 1249 aa18.74■□□□□ 0.59
LIMS1-213ENST00000496653 PXDNLA1KZ92 1463 aa18.73■□□□□ 0.59
LIMS1-213ENST00000496653 SLC4A2P04920 1241 aa18.73■□□□□ 0.59
LIMS1-213ENST00000496653 TCIRG1Q13488 830 aa18.73■□□□□ 0.59
LIMS1-213ENST00000496653 PRR5LQ6MZQ0 368 aa18.73■□□□□ 0.59
LIMS1-213ENST00000496653 ZNF34Q8IZ26 560 aa18.73■□□□□ 0.59
LIMS1-213ENST00000496653 NLGN2Q8NFZ4 835 aa18.73■□□□□ 0.59
LIMS1-213ENST00000496653 NRXN2Q9P2S2 1712 aa18.73■□□□□ 0.59
LIMS1-213ENST00000496653 TRMT2AQ8IZ69 625 aaKnown RBP18.72■□□□□ 0.59
LIMS1-213ENST00000496653 HSP90B1P14625 803 aaKnown RBP18.71■□□□□ 0.59
LIMS1-213ENST00000496653 GPTP24298 496 aa18.71■□□□□ 0.59
LIMS1-213ENST00000496653 NEXNQ0ZGT2 675 aa18.71■□□□□ 0.59
LIMS1-213ENST00000496653 FLIIQ13045 1269 aa18.71■□□□□ 0.59
LIMS1-213ENST00000496653 RIC1Q4ADV7 1423 aa18.71■□□□□ 0.59
LIMS1-213ENST00000496653 H0YIN7 160 aa18.7■□□□□ 0.58
LIMS1-213ENST00000496653 GPR162Q16538 588 aa18.7■□□□□ 0.58
LIMS1-213ENST00000496653 KSR2Q6VAB6 950 aa18.7■□□□□ 0.58
LIMS1-213ENST00000496653 CDCA7LQ96GN5 454 aa18.7■□□□□ 0.58
LIMS1-213ENST00000496653 UTP14AQ9BVJ6 771 aaKnown RBP18.7■□□□□ 0.58
LIMS1-213ENST00000496653 PHAXQ9H814 394 aaKnown RBP18.7■□□□□ 0.58
LIMS1-213ENST00000496653 UBN2Q6ZU65 1347 aa18.7■□□□□ 0.58
LIMS1-213ENST00000496653 KIF13BQ9NQT8 1826 aa18.7■□□□□ 0.58
LIMS1-213ENST00000496653 GRIN3BO60391 1043 aa18.69■□□□□ 0.58
LIMS1-213ENST00000496653 TRIM28Q13263 835 aaKnown RBP18.69■□□□□ 0.58
LIMS1-213ENST00000496653 FKBP5Q13451 457 aaPredicted RBP18.69■□□□□ 0.58
LIMS1-213ENST00000496653 ALDH1L2Q3SY69 923 aa18.69■□□□□ 0.58
LIMS1-213ENST00000496653 PIM2Q9P1W9 311 aa18.69■□□□□ 0.58
LIMS1-213ENST00000496653 NLRP10Q86W26 655 aa18.68■□□□□ 0.58
LIMS1-213ENST00000496653 NTSR2O95665 410 aa18.67■□□□□ 0.58
LIMS1-213ENST00000496653 DPEP1P16444 411 aa18.67■□□□□ 0.58
LIMS1-213ENST00000496653 C2CD5Q86YS7 1000 aa18.67■□□□□ 0.58
LIMS1-213ENST00000496653 PELP1Q8IZL8 1130 aaKnown RBP18.67■□□□□ 0.58
LIMS1-213ENST00000496653 ISCA1Q9BUE6 129 aa18.67■□□□□ 0.58
LIMS1-213ENST00000496653 METTL22Q9BUU2 404 aaPredicted RBP18.67■□□□□ 0.58
LIMS1-213ENST00000496653 MAP3K2Q9Y2U5 619 aa18.67■□□□□ 0.58
LIMS1-213ENST00000496653 A0A0G2JLW4 131 aa18.66■□□□□ 0.58
LIMS1-213ENST00000496653 PI4KAP2A4QPH2 592 aa18.66■□□□□ 0.58
LIMS1-213ENST00000496653 FAM177BA6PVY3 158 aa18.66■□□□□ 0.58
LIMS1-213ENST00000496653 TCERG1O14776 1098 aaKnown RBP18.66■□□□□ 0.58
LIMS1-213ENST00000496653 SUSD4Q5VX71 490 aa18.66■□□□□ 0.58
LIMS1-213ENST00000496653 PI4KAP1Q8N8J0 262 aa18.66■□□□□ 0.58
LIMS1-213ENST00000496653 CCDC191Q8NCU4 936 aa18.66■□□□□ 0.58
LIMS1-213ENST00000496653 TRMT112Q9UI30 125 aaKnown RBP18.66■□□□□ 0.58
LIMS1-213ENST00000496653 PTPRCP08575 1304 aa18.66■□□□□ 0.58
LIMS1-213ENST00000496653 SH3TC1Q8TE82 1336 aa18.66■□□□□ 0.58
LIMS1-213ENST00000496653 DALRD3Q5D0E6 543 aaKnown RBP18.65■□□□□ 0.58
LIMS1-213ENST00000496653 STYK1Q6J9G0 422 aa18.64■□□□□ 0.57
LIMS1-213ENST00000496653 DNAAF4Q8WXU2 420 aa18.64■□□□□ 0.57
LIMS1-213ENST00000496653 CNKSR1Q969H4 720 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms