RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 NPM2Q86SE8 214 aaKnown RBP16.91■□□□□ 0.3
SKA1-205ENST00000494518 DNAJC5GQ8N7S2 189 aa16.91■□□□□ 0.3
SKA1-205ENST00000494518 NUDCQ9Y266 331 aa16.91■□□□□ 0.3
SKA1-205ENST00000494518 C21orf2O43822 256 aa16.9■□□□□ 0.3
SKA1-205ENST00000494518 DZIP3Q86Y13 1208 aaKnown RBP16.9■□□□□ 0.3
SKA1-205ENST00000494518 USP16Q9Y5T5 823 aa16.9■□□□□ 0.3
SKA1-205ENST00000494518 PCNTO95613 3336 aa16.9■□□□□ 0.3
SKA1-205ENST00000494518 ARFGEF2Q9Y6D5 1785 aa16.89■□□□□ 0.3
SKA1-205ENST00000494518 CNBD1Q8NA66 436 aa16.89■□□□□ 0.29
SKA1-205ENST00000494518 RTF1Q92541 710 aaKnown RBP16.89■□□□□ 0.29
SKA1-205ENST00000494518 SETDB2Q96T68 719 aa16.89■□□□□ 0.29
SKA1-205ENST00000494518 BRIP1Q9BX63 1249 aa16.89■□□□□ 0.29
SKA1-205ENST00000494518 PDE6BP35913 854 aa16.88■□□□□ 0.29
SKA1-205ENST00000494518 FSTL1Q12841 308 aa16.88■□□□□ 0.29
SKA1-205ENST00000494518 GLTPD2A6NH11 291 aa16.87■□□□□ 0.29
SKA1-205ENST00000494518 ZC3H4Q9UPT8 1303 aaKnown RBP16.87■□□□□ 0.29
SKA1-205ENST00000494518 LAMB4A4D0S4 1761 aa16.87■□□□□ 0.29
SKA1-205ENST00000494518 ST5P78524 1137 aa16.86■□□□□ 0.29
SKA1-205ENST00000494518 SMC1BQ8NDV3 1235 aa16.86■□□□□ 0.29
SKA1-205ENST00000494518 MIS18AQ9NYP9 233 aa16.86■□□□□ 0.29
SKA1-205ENST00000494518 FAM177BA6PVY3 158 aa16.85■□□□□ 0.29
SKA1-205ENST00000494518 SNRPA1P09661 255 aaKnown RBP16.85■□□□□ 0.29
SKA1-205ENST00000494518 KDM3BQ7LBC6 1761 aa16.84■□□□□ 0.29
SKA1-205ENST00000494518 VEGFAP15692 232 aaPredicted RBP16.84■□□□□ 0.29
SKA1-205ENST00000494518 PRPF40BQ6NWY9 871 aaKnown RBP16.84■□□□□ 0.29
SKA1-205ENST00000494518 NBPF5PQ86XG9 351 aaPredicted RBP16.84■□□□□ 0.29
SKA1-205ENST00000494518 KLRG1Q96E93 195 aa16.84■□□□□ 0.29
SKA1-205ENST00000494518 NBPF26B4DH59 902 aa16.83■□□□□ 0.28
SKA1-205ENST00000494518 NUP98P52948 1817 aa16.83■□□□□ 0.28
SKA1-205ENST00000494518 ERFEQ4G0M1 354 aa16.83■□□□□ 0.28
SKA1-205ENST00000494518 NBPF10Q6P3W6 841 aaKnown RBP16.83■□□□□ 0.28
SKA1-205ENST00000494518 NBPF15Q8N660 670 aa16.83■□□□□ 0.28
SKA1-205ENST00000494518 PDZRN3Q9UPQ7 1066 aa16.83■□□□□ 0.28
SKA1-205ENST00000494518 SRGNP10124 158 aa16.82■□□□□ 0.28
SKA1-205ENST00000494518 CNKSR1Q969H4 720 aa16.82■□□□□ 0.28
SKA1-205ENST00000494518 TAOK3Q9H2K8 898 aa16.82■□□□□ 0.28
SKA1-205ENST00000494518 POTECB2RU33 542 aa16.81■□□□□ 0.28
SKA1-205ENST00000494518 STYK1Q6J9G0 422 aa16.81■□□□□ 0.28
SKA1-205ENST00000494518 NGEFQ8N5V2 710 aa16.81■□□□□ 0.28
SKA1-205ENST00000494518 MASTLQ96GX5 879 aa16.81■□□□□ 0.28
SKA1-205ENST00000494518 NIP7Q9Y221 180 aaKnown RBP eCLIP16.81■□□□□ 0.28
SKA1-205ENST00000494518 ZNF652Q9Y2D9 606 aa16.81■□□□□ 0.28
SKA1-205ENST00000494518 DPY19L2Q6NUT2 758 aa16.8■□□□□ 0.28
SKA1-205ENST00000494518 THUMPD2Q9BTF0 503 aaKnown RBP16.8■□□□□ 0.28
SKA1-205ENST00000494518 TAF7Q15545 349 aaPredicted RBP16.79■□□□□ 0.28
SKA1-205ENST00000494518 HLFQ16534 295 aa16.79■□□□□ 0.28
SKA1-205ENST00000494518 OLFM4Q6UX06 510 aa16.79■□□□□ 0.28
SKA1-205ENST00000494518 HTATSF1O43719 755 aaKnown RBP16.78■□□□□ 0.28
SKA1-205ENST00000494518 DDNO94850 711 aaPredicted RBP16.78■□□□□ 0.28
SKA1-205ENST00000494518 CLEC4GQ6UXB4 293 aa16.78■□□□□ 0.28
SKA1-205ENST00000494518 LTBP3Q9NS15 1303 aa16.77■□□□□ 0.28
SKA1-205ENST00000494518 POTEIP0CG38 1075 aa16.77■□□□□ 0.28
SKA1-205ENST00000494518 POTEJP0CG39 1038 aa16.77■□□□□ 0.28
SKA1-205ENST00000494518 NEFMP07197 916 aa16.76■□□□□ 0.27
SKA1-205ENST00000494518 NPR1P16066 1061 aa16.76■□□□□ 0.27
SKA1-205ENST00000494518 JMYQ8N9B5 988 aa16.76■□□□□ 0.27
SKA1-205ENST00000494518 RRP7AQ9Y3A4 280 aaKnown RBP16.76■□□□□ 0.27
SKA1-205ENST00000494518 GTF2E1P29083 439 aaPredicted RBP16.75■□□□□ 0.27
SKA1-205ENST00000494518 CCDC93Q567U6 631 aa16.75■□□□□ 0.27
SKA1-205ENST00000494518 SOGA3Q5TF21 947 aa16.75■□□□□ 0.27
SKA1-205ENST00000494518 TPTE2Q6XPS3 522 aa16.75■□□□□ 0.27
SKA1-205ENST00000494518 ZNF277Q9NRM2 450 aaPredicted RBP16.75■□□□□ 0.27
SKA1-205ENST00000494518 ABCC12Q96J65 1359 aa16.75■□□□□ 0.27
SKA1-205ENST00000494518 MYL6BP14649 208 aa16.74■□□□□ 0.27
SKA1-205ENST00000494518 TTLL7Q6ZT98 887 aa16.74■□□□□ 0.27
SKA1-205ENST00000494518 NUTM1Q86Y26 1132 aa16.74■□□□□ 0.27
SKA1-205ENST00000494518 C7orf43Q8WVR3 580 aa16.74■□□□□ 0.27
SKA1-205ENST00000494518 PLEKHF1Q96S99 279 aa16.74■□□□□ 0.27
SKA1-205ENST00000494518 SCN4AP35499 1836 aa16.74■□□□□ 0.27
SKA1-205ENST00000494518 GPTP24298 496 aa16.73■□□□□ 0.27
SKA1-205ENST00000494518 NFE2L2Q16236 605 aa16.73■□□□□ 0.27
SKA1-205ENST00000494518 COL13A1Q5TAT6 717 aaPredicted RBP16.73■□□□□ 0.27
SKA1-205ENST00000494518 ZNF541Q9H0D2 1346 aa16.72■□□□□ 0.27
SKA1-205ENST00000494518 KLRG2A4D1S0 409 aaPredicted RBP16.72■□□□□ 0.27
SKA1-205ENST00000494518 EIF4A1P60842 406 aaKnown RBP16.72■□□□□ 0.27
SKA1-205ENST00000494518 FKBP4Q02790 459 aaKnown RBP eCLIP16.72■□□□□ 0.27
SKA1-205ENST00000494518 ZBTB3Q9H5J0 574 aa16.72■□□□□ 0.27
SKA1-205ENST00000494518 MAPK8IP3Q9UPT6 1336 aa16.71■□□□□ 0.27
SKA1-205ENST00000494518 CHADLQ6NUI6 762 aa16.71■□□□□ 0.27
SKA1-205ENST00000494518 KIF6Q6ZMV9 814 aa16.71■□□□□ 0.27
SKA1-205ENST00000494518 SLC51AQ86UW1 340 aa16.71■□□□□ 0.27
SKA1-205ENST00000494518 PNISRQ8TF01 805 aaKnown RBP16.71■□□□□ 0.27
SKA1-205ENST00000494518 MAP3K15Q6ZN16 1313 aa16.7■□□□□ 0.26
SKA1-205ENST00000494518 UBN2Q6ZU65 1347 aa16.7■□□□□ 0.26
SKA1-205ENST00000494518 HSPA1AP0DMV8 641 aaKnown RBP16.69■□□□□ 0.26
SKA1-205ENST00000494518 HSPA1BP0DMV9 641 aaKnown RBP16.69■□□□□ 0.26
SKA1-205ENST00000494518 EAPPQ56P03 285 aaPredicted RBP16.69■□□□□ 0.26
SKA1-205ENST00000494518 SYNE4Q8N205 404 aa16.69■□□□□ 0.26
SKA1-205ENST00000494518 MKRN1Q9UHC7 482 aaKnown RBP16.69■□□□□ 0.26
SKA1-205ENST00000494518 TCERG1O14776 1098 aaKnown RBP16.68■□□□□ 0.26
SKA1-205ENST00000494518 RGL2O15211 777 aa16.68■□□□□ 0.26
SKA1-205ENST00000494518 CAPN15O75808 1086 aa16.68■□□□□ 0.26
SKA1-205ENST00000494518 NYXQ9GZU5 481 aa16.68■□□□□ 0.26
SKA1-205ENST00000494518 TAF1DQ9H5J8 278 aaPredicted RBP16.68■□□□□ 0.26
SKA1-205ENST00000494518 TSPYL4Q9UJ04 414 aa16.68■□□□□ 0.26
SKA1-205ENST00000494518 COL4A5P29400 1685 aa16.67■□□□□ 0.26
SKA1-205ENST00000494518 IQCA1LA6NCM1 817 aa16.67■□□□□ 0.26
SKA1-205ENST00000494518 ERVV-1B6SEH8 477 aa16.67■□□□□ 0.26
SKA1-205ENST00000494518 ANXA1P04083 346 aa16.67■□□□□ 0.26
SKA1-205ENST00000494518 EIF2S2P20042 333 aaKnown RBP16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms