RNA–Protein interactions for RNA: ENST00000491330.1

PDLIM2-217, Transcript of PDZ and LIM domain 2, humanhuman

TSL 3

Gene PDLIM2, Length 563 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-217ENST00000491330 ZNF316A6NFI3 1004 aaPredicted RBP21.63■■□□□ 1.05
PDLIM2-217ENST00000491330 NBPF26B4DH59 902 aa21.63■■□□□ 1.05
PDLIM2-217ENST00000491330 MYL6BP14649 208 aa21.63■■□□□ 1.05
PDLIM2-217ENST00000491330 LMNB1P20700 586 aa21.63■■□□□ 1.05
PDLIM2-217ENST00000491330 CALD1Q05682 793 aaKnown RBP21.63■■□□□ 1.05
PDLIM2-217ENST00000491330 STYK1Q6J9G0 422 aa21.63■■□□□ 1.05
PDLIM2-217ENST00000491330 NBPF10Q6P3W6 841 aaKnown RBP21.63■■□□□ 1.05
PDLIM2-217ENST00000491330 CCDC146Q8IYE0 955 aa21.63■■□□□ 1.05
PDLIM2-217ENST00000491330 NBPF15Q8N660 670 aa21.63■■□□□ 1.05
PDLIM2-217ENST00000491330 MASTLQ96GX5 879 aa21.63■■□□□ 1.05
PDLIM2-217ENST00000491330 ZC3H4Q9UPT8 1303 aaKnown RBP21.62■■□□□ 1.05
PDLIM2-217ENST00000491330 LAS1LQ9Y4W2 734 aaKnown RBP21.62■■□□□ 1.05
PDLIM2-217ENST00000491330 EIF2S2P20042 333 aaKnown RBP21.61■■□□□ 1.05
PDLIM2-217ENST00000491330 ADAMTS8Q9UP79 889 aa21.6■■□□□ 1.05
PDLIM2-217ENST00000491330 MAP3K15Q6ZN16 1313 aa21.59■■□□□ 1.05
PDLIM2-217ENST00000491330 FAM177BA6PVY3 158 aa21.59■■□□□ 1.05
PDLIM2-217ENST00000491330 NPR1P16066 1061 aa21.59■■□□□ 1.05
PDLIM2-217ENST00000491330 ALDH1B1P30837 517 aa21.59■■□□□ 1.05
PDLIM2-217ENST00000491330 DPY19L2Q6NUT2 758 aa21.59■■□□□ 1.05
PDLIM2-217ENST00000491330 CCDC24Q8N4L8 307 aa21.59■■□□□ 1.05
PDLIM2-217ENST00000491330 CHMP4AQ9BY43 222 aa21.59■■□□□ 1.05
PDLIM2-217ENST00000491330 C21orf2O43822 256 aa21.58■■□□□ 1.05
PDLIM2-217ENST00000491330 TOMM70O94826 608 aa21.58■■□□□ 1.05
PDLIM2-217ENST00000491330 SRGNP10124 158 aa21.58■■□□□ 1.05
PDLIM2-217ENST00000491330 DLG5Q8TDM6 1919 aa21.58■■□□□ 1.04
PDLIM2-217ENST00000491330 PPP1R42Q7Z4L9 355 aa21.57■■□□□ 1.04
PDLIM2-217ENST00000491330 TMX4Q9H1E5 349 aaPredicted RBP21.57■■□□□ 1.04
PDLIM2-217ENST00000491330 ZNF219Q9P2Y4 722 aaPredicted RBP21.57■■□□□ 1.04
PDLIM2-217ENST00000491330 HSP90AB3PQ58FF7 597 aa21.56■■□□□ 1.04
PDLIM2-217ENST00000491330 UTRNP46939 3433 aa21.55■■□□□ 1.04
PDLIM2-217ENST00000491330 KIAA1551Q9HCM1 1747 aa21.55■■□□□ 1.04
PDLIM2-217ENST00000491330 HLFQ16534 295 aa21.55■■□□□ 1.04
PDLIM2-217ENST00000491330 PARP10Q53GL7 1025 aa21.55■■□□□ 1.04
PDLIM2-217ENST00000491330 ZBTB3Q9H5J0 574 aa21.55■■□□□ 1.04
PDLIM2-217ENST00000491330 SCN7AQ01118 1682 aa21.55■■□□□ 1.04
PDLIM2-217ENST00000491330 NRXN2Q9P2S2 1712 aa21.55■■□□□ 1.04
PDLIM2-217ENST00000491330 KIF3CO14782 793 aa21.54■■□□□ 1.04
PDLIM2-217ENST00000491330 PRPF40BQ6NWY9 871 aaKnown RBP21.54■■□□□ 1.04
PDLIM2-217ENST00000491330 GIGYF2Q6Y7W6 1299 aaKnown RBP21.54■■□□□ 1.04
PDLIM2-217ENST00000491330 TAOK3Q9H2K8 898 aa21.54■■□□□ 1.04
PDLIM2-217ENST00000491330 CHL1O00533 1208 aa21.53■■□□□ 1.04
PDLIM2-217ENST00000491330 HOXB7P09629 217 aa21.53■■□□□ 1.04
PDLIM2-217ENST00000491330 RASSF7Q02833 373 aa21.53■■□□□ 1.04
PDLIM2-217ENST00000491330 RPGRQ92834 1020 aaKnown RBP21.53■■□□□ 1.04
PDLIM2-217ENST00000491330 ANP32CO43423 234 aa21.52■■□□□ 1.04
PDLIM2-217ENST00000491330 HSPA6P17066 643 aa21.52■■□□□ 1.04
PDLIM2-217ENST00000491330 ERFEQ4G0M1 354 aa21.52■■□□□ 1.04
PDLIM2-217ENST00000491330 CCDC93Q567U6 631 aa21.52■■□□□ 1.04
PDLIM2-217ENST00000491330 RTKN2Q8IZC4 609 aa21.52■■□□□ 1.04
PDLIM2-217ENST00000491330 CFAP44Q96MT7 982 aa21.52■■□□□ 1.04
PDLIM2-217ENST00000491330 ARFGEF1Q9Y6D6 1849 aa21.52■■□□□ 1.04
PDLIM2-217ENST00000491330 AFDNP55196 1824 aaKnown RBP21.51■■□□□ 1.03
PDLIM2-217ENST00000491330 GPTP24298 496 aa21.51■■□□□ 1.03
PDLIM2-217ENST00000491330 TTLL7Q6ZT98 887 aa21.51■■□□□ 1.03
PDLIM2-217ENST00000491330 NMRK2Q9NPI5 230 aa21.51■■□□□ 1.03
PDLIM2-217ENST00000491330 KLRG2A4D1S0 409 aaPredicted RBP21.5■■□□□ 1.03
PDLIM2-217ENST00000491330 GLTPD2A6NH11 291 aa21.5■■□□□ 1.03
PDLIM2-217ENST00000491330 GNAI1P63096 354 aa21.5■■□□□ 1.03
PDLIM2-217ENST00000491330 AIMP1Q12904 312 aaKnown RBP21.5■■□□□ 1.03
PDLIM2-217ENST00000491330 HDGFL1Q5TGJ6 251 aa21.5■■□□□ 1.03
PDLIM2-217ENST00000491330 DDX21Q9NR30 783 aaKnown RBP eCLIP21.5■■□□□ 1.03
PDLIM2-217ENST00000491330 TRIM35Q9UPQ4 493 aa21.5■■□□□ 1.03
PDLIM2-217ENST00000491330 LTBP3Q9NS15 1303 aa21.5■■□□□ 1.03
PDLIM2-217ENST00000491330 VEGFAP15692 232 aaPredicted RBP21.49■■□□□ 1.03
PDLIM2-217ENST00000491330 GRIPAP1Q4V328 841 aa21.49■■□□□ 1.03
PDLIM2-217ENST00000491330 CC2D2BQ6DHV5 1058 aa21.49■■□□□ 1.03
PDLIM2-217ENST00000491330 RBM46Q8TBY0 533 aaKnown RBP21.49■■□□□ 1.03
PDLIM2-217ENST00000491330 NECTIN2Q92692 538 aa21.49■■□□□ 1.03
PDLIM2-217ENST00000491330 RBM17Q96I25 401 aaKnown RBP21.49■■□□□ 1.03
PDLIM2-217ENST00000491330 NLRP3Q96P20 1036 aa21.49■■□□□ 1.03
PDLIM2-217ENST00000491330 RRAGCQ9HB90 399 aa21.49■■□□□ 1.03
PDLIM2-217ENST00000491330 DBF4Q9UBU7 674 aaPredicted RBP21.49■■□□□ 1.03
PDLIM2-217ENST00000491330 BRCA1P38398 1863 aaKnown RBP21.48■■□□□ 1.03
PDLIM2-217ENST00000491330 NFKBIEO00221 500 aa21.48■■□□□ 1.03
PDLIM2-217ENST00000491330 APAF1O14727 1248 aa21.48■■□□□ 1.03
PDLIM2-217ENST00000491330 COPS6Q7L5N1 327 aa21.48■■□□□ 1.03
PDLIM2-217ENST00000491330 UTP14AQ9BVJ6 771 aaKnown RBP21.48■■□□□ 1.03
PDLIM2-217ENST00000491330 RNF123Q5XPI4 1314 aa21.48■■□□□ 1.03
PDLIM2-217ENST00000491330 IBTKQ9P2D0 1353 aaPredicted RBP21.48■■□□□ 1.03
PDLIM2-217ENST00000491330 KDM3BQ7LBC6 1761 aa21.47■■□□□ 1.03
PDLIM2-217ENST00000491330 FSTL1Q12841 308 aa21.47■■□□□ 1.03
PDLIM2-217ENST00000491330 NUTM1Q86Y26 1132 aa21.47■■□□□ 1.03
PDLIM2-217ENST00000491330 ZNF34Q8IZ26 560 aa21.47■■□□□ 1.03
PDLIM2-217ENST00000491330 APLP1P51693 650 aa21.46■■□□□ 1.03
PDLIM2-217ENST00000491330 XAGE3Q8WTP9 111 aa21.46■■□□□ 1.03
PDLIM2-217ENST00000491330 IFT57Q9NWB7 429 aa21.46■■□□□ 1.03
PDLIM2-217ENST00000491330 HYPKQ9NX55 129 aa21.46■■□□□ 1.03
PDLIM2-217ENST00000491330 LAMB4A4D0S4 1761 aa21.46■■□□□ 1.03
PDLIM2-217ENST00000491330 SUSD4Q5VX71 490 aa21.45■■□□□ 1.02
PDLIM2-217ENST00000491330 BCORQ6W2J9 1755 aa21.45■■□□□ 1.02
PDLIM2-217ENST00000491330 GOLGB1Q14789 3259 aaKnown RBP21.45■■□□□ 1.02
PDLIM2-217ENST00000491330 FKBP4Q02790 459 aaKnown RBP eCLIP21.44■■□□□ 1.02
PDLIM2-217ENST00000491330 PDIA6Q15084 440 aa21.44■■□□□ 1.02
PDLIM2-217ENST00000491330 SMC1BQ8NDV3 1235 aa21.44■■□□□ 1.02
PDLIM2-217ENST00000491330 HSP90B1P14625 803 aaKnown RBP21.43■■□□□ 1.02
PDLIM2-217ENST00000491330 DUSP27Q5VZP5 1158 aa21.43■■□□□ 1.02
PDLIM2-217ENST00000491330 TCIRG1Q13488 830 aa21.42■■□□□ 1.02
PDLIM2-217ENST00000491330 CRY2Q49AN0 593 aa21.42■■□□□ 1.02
PDLIM2-217ENST00000491330 ANKRD13DQ6ZTN6 518 aa21.42■■□□□ 1.02
PDLIM2-217ENST00000491330 JDP2Q8WYK2 163 aa21.42■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms