RNA–Protein interactions for RNA: ENST00000490866.2

SYNE1-229, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 581 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-229ENST00000490866 RRP1P56182 461 aaKnown RBP8.85□□□□□ -0.99
SYNE1-229ENST00000490866 FAM196AQ6ZSG2 479 aa8.85□□□□□ -0.99
SYNE1-229ENST00000490866 NPM2Q86SE8 214 aaKnown RBP8.85□□□□□ -0.99
SYNE1-229ENST00000490866 TSR2Q969E8 191 aaKnown RBP8.85□□□□□ -0.99
SYNE1-229ENST00000490866 SMC4Q9NTJ3 1288 aa8.85□□□□□ -0.99
SYNE1-229ENST00000490866 HYPKQ9NX55 129 aa8.85□□□□□ -0.99
SYNE1-229ENST00000490866 TNS2Q63HR2 1409 aa8.85□□□□□ -0.99
SYNE1-229ENST00000490866 ADAMTS7Q9UKP4 1686 aa8.85□□□□□ -0.99
SYNE1-229ENST00000490866 SCN11AQ9UI33 1791 aa8.84□□□□□ -0.99
SYNE1-229ENST00000490866 GIGYF1O75420 1035 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-229ENST00000490866 ATRNO75882 1429 aa8.84□□□□□ -0.99
SYNE1-229ENST00000490866 RXRBP28702 533 aa8.84□□□□□ -0.99
SYNE1-229ENST00000490866 FAM98CQ17RN3 349 aaKnown RBP8.84□□□□□ -0.99
SYNE1-229ENST00000490866 ATF7IPQ6VMQ6 1270 aa8.84□□□□□ -0.99
SYNE1-229ENST00000490866 NRAPQ86VF7 1730 aa8.84□□□□□ -0.99
SYNE1-229ENST00000490866 FTSJ3Q8IY81 847 aaKnown RBP8.84□□□□□ -0.99
SYNE1-229ENST00000490866 THUMPD2Q9BTF0 503 aaKnown RBP8.84□□□□□ -0.99
SYNE1-229ENST00000490866 HEG1Q9ULI3 1381 aa8.84□□□□□ -0.99
SYNE1-229ENST00000490866 LRP6O75581 1613 aa8.83□□□□□ -1
SYNE1-229ENST00000490866 A0A0G2JS52 829 aa8.83□□□□□ -1
SYNE1-229ENST00000490866 MYT1Q01538 1121 aa8.83□□□□□ -1
SYNE1-229ENST00000490866 HDGFL1Q5TGJ6 251 aa8.83□□□□□ -1
SYNE1-229ENST00000490866 C8orf58Q8NAV2 365 aa8.83□□□□□ -1
SYNE1-229ENST00000490866 CRISPLD2Q9H0B8 497 aa8.83□□□□□ -1
SYNE1-229ENST00000490866 DDX19BQ9UMR2 479 aa8.83□□□□□ -1
SYNE1-229ENST00000490866 MRC1P22897 1456 aa8.83□□□□□ -1
SYNE1-229ENST00000490866 EMP3P54852 163 aa8.82□□□□□ -1
SYNE1-229ENST00000490866 GPR153Q6NV75 609 aa8.82□□□□□ -1
SYNE1-229ENST00000490866 DZIP1LQ8IYY4 767 aaKnown RBP8.82□□□□□ -1
SYNE1-229ENST00000490866 SSH1Q8WYL5 1049 aa8.82□□□□□ -1
SYNE1-229ENST00000490866 DDX21Q9NR30 783 aaKnown RBP eCLIP8.82□□□□□ -1
SYNE1-229ENST00000490866 LRRC37A3O60309 1634 aa8.81□□□□□ -1
SYNE1-229ENST00000490866 CCT4P50991 539 aaKnown RBP8.81□□□□□ -1
SYNE1-229ENST00000490866 SEPT12Q8IYM1 358 aa8.81□□□□□ -1
SYNE1-229ENST00000490866 MRPL50Q8N5N7 158 aaKnown RBP8.81□□□□□ -1
SYNE1-229ENST00000490866 MARCH10Q8NA82 808 aaPredicted RBP8.81□□□□□ -1
SYNE1-229ENST00000490866 FRAT1Q92837 279 aaPredicted RBP8.81□□□□□ -1
SYNE1-229ENST00000490866 PPP4R2Q9NY27 417 aa8.81□□□□□ -1
SYNE1-229ENST00000490866 MIS18AQ9NYP9 233 aa8.81□□□□□ -1
SYNE1-229ENST00000490866 KDM6AO15550 1401 aaPredicted RBP8.8□□□□□ -1
SYNE1-229ENST00000490866 SENP3-EIF4A1A0A087X0R7 540 aa8.8□□□□□ -1
SYNE1-229ENST00000490866 ELL2O00472 640 aaPredicted RBP8.8□□□□□ -1
SYNE1-229ENST00000490866 BCAR3O75815 825 aa8.8□□□□□ -1
SYNE1-229ENST00000490866 PRIM1P49642 420 aaKnown RBP8.8□□□□□ -1
SYNE1-229ENST00000490866 KRT27Q7Z3Y8 459 aa8.8□□□□□ -1
SYNE1-229ENST00000490866 PLPP6Q8IY26 295 aa8.8□□□□□ -1
SYNE1-229ENST00000490866 PIGBQ92521 554 aa8.8□□□□□ -1
SYNE1-229ENST00000490866 PLSCR2Q9NRY7 297 aa8.8□□□□□ -1
SYNE1-229ENST00000490866 NOB1Q9ULX3 412 aaKnown RBP8.8□□□□□ -1
SYNE1-229ENST00000490866 GTF3C3Q9Y5Q9 886 aa8.8□□□□□ -1
SYNE1-229ENST00000490866 IBTKQ9P2D0 1353 aaPredicted RBP8.8□□□□□ -1
SYNE1-229ENST00000490866 TBC1D12O60347 775 aa8.79□□□□□ -1
SYNE1-229ENST00000490866 HSP90B1P14625 803 aaKnown RBP8.79□□□□□ -1
SYNE1-229ENST00000490866 NEXNQ0ZGT2 675 aa8.79□□□□□ -1
SYNE1-229ENST00000490866 INTS3Q68E01 1043 aaKnown RBP8.79□□□□□ -1
SYNE1-229ENST00000490866 TSPYL6Q8N831 410 aa8.79□□□□□ -1
SYNE1-229ENST00000490866 PTCD2Q8WV60 388 aaKnown RBP8.79□□□□□ -1
SYNE1-229ENST00000490866 MARVELD3Q96A59 401 aa8.79□□□□□ -1
SYNE1-229ENST00000490866 SYTL4Q96C24 671 aaPredicted RBP8.79□□□□□ -1
SYNE1-229ENST00000490866 VIRMAQ69YN4 1812 aaKnown RBP8.78□□□□□ -1
SYNE1-229ENST00000490866 WNK3Q9BYP7 1800 aa8.78□□□□□ -1
SYNE1-229ENST00000490866 A0A087WZG4 1122 aa8.78□□□□□ -1
SYNE1-229ENST00000490866 EIF2S2P20042 333 aaKnown RBP8.78□□□□□ -1
SYNE1-229ENST00000490866 DSG2Q14126 1118 aa8.78□□□□□ -1
SYNE1-229ENST00000490866 MVPQ14764 893 aaKnown RBP8.78□□□□□ -1
SYNE1-229ENST00000490866 SLC27A3Q5K4L6 730 aa8.78□□□□□ -1
SYNE1-229ENST00000490866 CCDC125Q86Z20 511 aa8.78□□□□□ -1
SYNE1-229ENST00000490866 ZNF496Q96IT1 587 aaPredicted RBP8.78□□□□□ -1
SYNE1-229ENST00000490866 ATG3Q9NT62 314 aa8.78□□□□□ -1
SYNE1-229ENST00000490866 SIPA1L3O60292 1781 aaPredicted RBP8.78□□□□□ -1
SYNE1-229ENST00000490866 KDM3BQ7LBC6 1761 aa8.77□□□□□ -1.01
SYNE1-229ENST00000490866 GNAI3P08754 354 aa8.77□□□□□ -1.01
SYNE1-229ENST00000490866 FLIIQ13045 1269 aa8.77□□□□□ -1.01
SYNE1-229ENST00000490866 FKBP5Q13451 457 aaPredicted RBP8.77□□□□□ -1.01
SYNE1-229ENST00000490866 HSP90AB3PQ58FF7 597 aa8.77□□□□□ -1.01
SYNE1-229ENST00000490866 RC3H1Q5TC82 1133 aaKnown RBP8.77□□□□□ -1.01
SYNE1-229ENST00000490866 KSR2Q6VAB6 950 aa8.77□□□□□ -1.01
SYNE1-229ENST00000490866 PLSCR1O15162 318 aa8.76□□□□□ -1.01
SYNE1-229ENST00000490866 ALDH1L1O75891 902 aa8.76□□□□□ -1.01
SYNE1-229ENST00000490866 TRIM27P14373 513 aa8.76□□□□□ -1.01
SYNE1-229ENST00000490866 IL6STP40189 918 aaPredicted RBP8.76□□□□□ -1.01
SYNE1-229ENST00000490866 SLC39A6Q13433 755 aa8.76□□□□□ -1.01
SYNE1-229ENST00000490866 MFSD10Q14728 455 aa8.76□□□□□ -1.01
SYNE1-229ENST00000490866 ARSIQ5FYB1 569 aa8.76□□□□□ -1.01
SYNE1-229ENST00000490866 ANKRD13DQ6ZTN6 518 aa8.76□□□□□ -1.01
SYNE1-229ENST00000490866 CDAN1Q8IWY9 1227 aa8.76□□□□□ -1.01
SYNE1-229ENST00000490866 RWDD1Q9H446 243 aaPredicted RBP8.76□□□□□ -1.01
SYNE1-229ENST00000490866 PCDHGA4Q9Y5G9 962 aa8.76□□□□□ -1.01
SYNE1-229ENST00000490866 THSD7AQ9UPZ6 1657 aa8.75□□□□□ -1.01
SYNE1-229ENST00000490866 LOC102724428A0A0B4J2F2 783 aa8.75□□□□□ -1.01
SYNE1-229ENST00000490866 ERVV-1B6SEH8 477 aa8.75□□□□□ -1.01
SYNE1-229ENST00000490866 PTCD1O75127 700 aaKnown RBP8.75□□□□□ -1.01
SYNE1-229ENST00000490866 ATP6V1AP38606 617 aa8.75□□□□□ -1.01
SYNE1-229ENST00000490866 SIK1P57059 783 aa8.75□□□□□ -1.01
SYNE1-229ENST00000490866 PPP1R15BQ5SWA1 713 aa8.75□□□□□ -1.01
SYNE1-229ENST00000490866 PAXIP1Q6ZW49 1069 aaPredicted RBP8.75□□□□□ -1.01
SYNE1-229ENST00000490866 RIC3Q7Z5B4 369 aa8.75□□□□□ -1.01
SYNE1-229ENST00000490866 RPAP2Q8IXW5 612 aaPredicted RBP8.75□□□□□ -1.01
SYNE1-229ENST00000490866 PLBD2Q8NHP8 589 aa8.75□□□□□ -1.01
SYNE1-229ENST00000490866 DDX27Q96GQ7 796 aaKnown RBP8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms