RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 CLEC4GQ6UXB4 293 aa23.67■■□□□ 1.38
COL9A3-214ENST00000490398 ZBTB3Q9H5J0 574 aa23.65■■□□□ 1.38
COL9A3-214ENST00000490398 PIM2Q9P1W9 311 aa23.65■■□□□ 1.38
COL9A3-214ENST00000490398 BRCA1P38398 1863 aaKnown RBP23.64■■□□□ 1.38
COL9A3-214ENST00000490398 ERBB4Q15303 1308 aa23.64■■□□□ 1.38
COL9A3-214ENST00000490398 MAP3K15Q6ZN16 1313 aa23.64■■□□□ 1.38
COL9A3-214ENST00000490398 FAM177BA6PVY3 158 aa23.64■■□□□ 1.37
COL9A3-214ENST00000490398 C2CD5Q86YS7 1000 aa23.64■■□□□ 1.37
COL9A3-214ENST00000490398 ZNF784Q8NCA9 323 aaPredicted RBP23.64■■□□□ 1.37
COL9A3-214ENST00000490398 IFT57Q9NWB7 429 aa23.64■■□□□ 1.37
COL9A3-214ENST00000490398 NIP7Q9Y221 180 aaKnown RBP eCLIP23.64■■□□□ 1.37
COL9A3-214ENST00000490398 CHD4Q14839 1912 aa23.63■■□□□ 1.37
COL9A3-214ENST00000490398 ZNF652Q9Y2D9 606 aa23.63■■□□□ 1.37
COL9A3-214ENST00000490398 ANKRD31Q8N7Z5 1873 aa23.62■■□□□ 1.37
COL9A3-214ENST00000490398 DALRD3Q5D0E6 543 aaKnown RBP23.62■■□□□ 1.37
COL9A3-214ENST00000490398 FAM9BQ8IZU0 186 aa23.62■■□□□ 1.37
COL9A3-214ENST00000490398 CNBD1Q8NA66 436 aa23.62■■□□□ 1.37
COL9A3-214ENST00000490398 SALL2Q9Y467 1007 aaPredicted RBP23.62■■□□□ 1.37
COL9A3-214ENST00000490398 ERVV-1B6SEH8 477 aa23.61■■□□□ 1.37
COL9A3-214ENST00000490398 GNAI1P63096 354 aa23.61■■□□□ 1.37
COL9A3-214ENST00000490398 DUSP27Q5VZP5 1158 aa23.61■■□□□ 1.37
COL9A3-214ENST00000490398 KIF6Q6ZMV9 814 aa23.61■■□□□ 1.37
COL9A3-214ENST00000490398 WWC1Q8IX03 1113 aa23.61■■□□□ 1.37
COL9A3-214ENST00000490398 BRIP1Q9BX63 1249 aa23.61■■□□□ 1.37
COL9A3-214ENST00000490398 CHPF2Q9P2E5 772 aa23.61■■□□□ 1.37
COL9A3-214ENST00000490398 ELL2O00472 640 aaPredicted RBP23.6■■□□□ 1.37
COL9A3-214ENST00000490398 RGL2O15211 777 aa23.6■■□□□ 1.37
COL9A3-214ENST00000490398 GPTP24298 496 aa23.6■■□□□ 1.37
COL9A3-214ENST00000490398 NBPF5PQ86XG9 351 aaPredicted RBP23.6■■□□□ 1.37
COL9A3-214ENST00000490398 C8orf58Q8NAV2 365 aa23.6■■□□□ 1.37
COL9A3-214ENST00000490398 XAGE3Q8WTP9 111 aa23.6■■□□□ 1.37
COL9A3-214ENST00000490398 AIMP1Q12904 312 aaKnown RBP23.59■■□□□ 1.37
COL9A3-214ENST00000490398 CCDC27Q2M243 656 aa23.59■■□□□ 1.37
COL9A3-214ENST00000490398 HDGFL1Q5TGJ6 251 aa23.59■■□□□ 1.37
COL9A3-214ENST00000490398 ARHGAP27Q6ZUM4 889 aa23.59■■□□□ 1.37
COL9A3-214ENST00000490398 COPS6Q7L5N1 327 aa23.59■■□□□ 1.37
COL9A3-214ENST00000490398 TSR2Q969E8 191 aaKnown RBP23.59■■□□□ 1.37
COL9A3-214ENST00000490398 UBN2Q6ZU65 1347 aa23.59■■□□□ 1.37
COL9A3-214ENST00000490398 H0YIN7 160 aa23.58■■□□□ 1.37
COL9A3-214ENST00000490398 DDX21Q9NR30 783 aaKnown RBP eCLIP23.58■■□□□ 1.37
COL9A3-214ENST00000490398 COL11A2P13942 1736 aaPredicted RBP23.58■■□□□ 1.37
COL9A3-214ENST00000490398 CALD1Q05682 793 aaKnown RBP23.57■■□□□ 1.36
COL9A3-214ENST00000490398 ATP10DQ9P241 1426 aa23.57■■□□□ 1.36
COL9A3-214ENST00000490398 HOXB7P09629 217 aa23.56■■□□□ 1.36
COL9A3-214ENST00000490398 PDE6BP35913 854 aa23.56■■□□□ 1.36
COL9A3-214ENST00000490398 ST5P78524 1137 aa23.56■■□□□ 1.36
COL9A3-214ENST00000490398 GIGYF2Q6Y7W6 1299 aaKnown RBP23.56■■□□□ 1.36
COL9A3-214ENST00000490398 ZNF34Q8IZ26 560 aa23.56■■□□□ 1.36
COL9A3-214ENST00000490398 TSPYL6Q8N831 410 aa23.56■■□□□ 1.36
COL9A3-214ENST00000490398 ABCC12Q96J65 1359 aa23.55■■□□□ 1.36
COL9A3-214ENST00000490398 NPHP1O15259 732 aa23.55■■□□□ 1.36
COL9A3-214ENST00000490398 SUSD4Q5VX71 490 aa23.55■■□□□ 1.36
COL9A3-214ENST00000490398 NUTM1Q86Y26 1132 aa23.55■■□□□ 1.36
COL9A3-214ENST00000490398 ZNF622Q969S3 477 aaKnown RBP eCLIP23.55■■□□□ 1.36
COL9A3-214ENST00000490398 DLEC1Q9Y238 1755 aa23.55■■□□□ 1.36
COL9A3-214ENST00000490398 NUP98P52948 1817 aa23.54■■□□□ 1.36
COL9A3-214ENST00000490398 ADCY9O60503 1353 aa23.54■■□□□ 1.36
COL9A3-214ENST00000490398 TPTE2Q6XPS3 522 aa23.54■■□□□ 1.36
COL9A3-214ENST00000490398 SRGNP10124 158 aa23.53■■□□□ 1.36
COL9A3-214ENST00000490398 ERFEQ4G0M1 354 aa23.53■■□□□ 1.36
COL9A3-214ENST00000490398 TTLL6Q8N841 843 aa23.53■■□□□ 1.36
COL9A3-214ENST00000490398 ARFGEF1Q9Y6D6 1849 aa23.52■■□□□ 1.36
COL9A3-214ENST00000490398 ZNF428Q96B54 188 aa23.52■■□□□ 1.36
COL9A3-214ENST00000490398 ZNF219Q9P2Y4 722 aaPredicted RBP23.52■■□□□ 1.36
COL9A3-214ENST00000490398 PRELPP51888 382 aa23.51■■□□□ 1.35
COL9A3-214ENST00000490398 RASSF7Q02833 373 aa23.51■■□□□ 1.35
COL9A3-214ENST00000490398 NCBP3Q53F19 620 aaKnown RBP23.51■■□□□ 1.35
COL9A3-214ENST00000490398 SPINK5Q9NQ38 1064 aaPredicted RBP23.51■■□□□ 1.35
COL9A3-214ENST00000490398 DBF4Q9UBU7 674 aaPredicted RBP23.51■■□□□ 1.35
COL9A3-214ENST00000490398 KLRG2A4D1S0 409 aaPredicted RBP23.5■■□□□ 1.35
COL9A3-214ENST00000490398 NTSR2O95665 410 aa23.5■■□□□ 1.35
COL9A3-214ENST00000490398 PHAXQ9H814 394 aaKnown RBP23.5■■□□□ 1.35
COL9A3-214ENST00000490398 TNRC6CQ9HCJ0 1690 aaKnown RBP23.5■■□□□ 1.35
COL9A3-214ENST00000490398 TCERG1O14776 1098 aaKnown RBP23.48■■□□□ 1.35
COL9A3-214ENST00000490398 GTF2E1P29083 439 aaPredicted RBP23.48■■□□□ 1.35
COL9A3-214ENST00000490398 STYK1Q6J9G0 422 aa23.48■■□□□ 1.35
COL9A3-214ENST00000490398 C3orf67Q6ZVT6 689 aa23.48■■□□□ 1.35
COL9A3-214ENST00000490398 PDZRN3Q9UPQ7 1066 aa23.48■■□□□ 1.35
COL9A3-214ENST00000490398 IL16Q14005 1332 aa23.48■■□□□ 1.35
COL9A3-214ENST00000490398 C21orf2O43822 256 aa23.47■■□□□ 1.35
COL9A3-214ENST00000490398 C9orf131Q5VYM1 1079 aa23.47■■□□□ 1.35
COL9A3-214ENST00000490398 ZNF526Q8TF50 670 aaPredicted RBP23.47■■□□□ 1.35
COL9A3-214ENST00000490398 MASTLQ96GX5 879 aa23.47■■□□□ 1.35
COL9A3-214ENST00000490398 NYXQ9GZU5 481 aa23.47■■□□□ 1.35
COL9A3-214ENST00000490398 NFKBIEO00221 500 aa23.46■■□□□ 1.35
COL9A3-214ENST00000490398 TCIRG1Q13488 830 aa23.46■■□□□ 1.35
COL9A3-214ENST00000490398 PRPF40BQ6NWY9 871 aaKnown RBP23.46■■□□□ 1.35
COL9A3-214ENST00000490398 NLRP10Q86W26 655 aa23.46■■□□□ 1.35
COL9A3-214ENST00000490398 SYNE4Q8N205 404 aa23.46■■□□□ 1.35
COL9A3-214ENST00000490398 FANCIQ9NVI1 1328 aa23.46■■□□□ 1.35
COL9A3-214ENST00000490398 HYPKQ9NX55 129 aa23.46■■□□□ 1.35
COL9A3-214ENST00000490398 IBTKQ9P2D0 1353 aaPredicted RBP23.46■■□□□ 1.35
COL9A3-214ENST00000490398 ANKRD13DQ6ZTN6 518 aa23.45■■□□□ 1.34
COL9A3-214ENST00000490398 WDR63Q8IWG1 891 aa23.45■■□□□ 1.34
COL9A3-214ENST00000490398 PLBD2Q8NHP8 589 aa23.45■■□□□ 1.34
COL9A3-214ENST00000490398 NPR1P16066 1061 aa23.44■■□□□ 1.34
COL9A3-214ENST00000490398 PARP10Q53GL7 1025 aa23.44■■□□□ 1.34
COL9A3-214ENST00000490398 OLFM4Q6UX06 510 aa23.44■■□□□ 1.34
COL9A3-214ENST00000490398 SLC51AQ86UW1 340 aa23.44■■□□□ 1.34
COL9A3-214ENST00000490398 CNKSR1Q969H4 720 aa23.44■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms