RNA–Protein interactions for RNA: ENST00000490135.6

SYNE1-228, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 5,707 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-228ENST00000490135 TSG101Q99816 390 aa8.34□□□□□ -1.07
SYNE1-228ENST00000490135 TAOK3Q9H2K8 898 aa8.34□□□□□ -1.07
SYNE1-228ENST00000490135 ARHGAP35Q9NRY4 1499 aa8.34□□□□□ -1.08
SYNE1-228ENST00000490135 ABCC8Q09428 1581 aa8.33□□□□□ -1.08
SYNE1-228ENST00000490135 CTAGE5O15320 804 aa8.33□□□□□ -1.08
SYNE1-228ENST00000490135 MPHOSPH9Q99550 1183 aa8.33□□□□□ -1.08
SYNE1-228ENST00000490135 ZSCAN12O43309 604 aa8.33□□□□□ -1.08
SYNE1-228ENST00000490135 SNX21Q969T3 373 aa8.33□□□□□ -1.08
SYNE1-228ENST00000490135 SEC24BO95487 1268 aa8.33□□□□□ -1.08
SYNE1-228ENST00000490135 USP5P45974 858 aa8.33□□□□□ -1.08
SYNE1-228ENST00000490135 LIG3P49916 1009 aa8.33□□□□□ -1.08
SYNE1-228ENST00000490135 RNF217Q8TC41 542 aa8.33□□□□□ -1.08
SYNE1-228ENST00000490135 TRIM6Q9C030 488 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-228ENST00000490135 SERPINA10Q9UK55 444 aa8.33□□□□□ -1.08
SYNE1-228ENST00000490135 ODF2LQ9ULJ1 636 aa8.33□□□□□ -1.08
SYNE1-228ENST00000490135 PDE3AQ14432 1141 aa8.33□□□□□ -1.08
SYNE1-228ENST00000490135 INF2Q27J81 1249 aa8.33□□□□□ -1.08
SYNE1-228ENST00000490135 CCDC121Q6ZUS5 278 aa8.33□□□□□ -1.08
SYNE1-228ENST00000490135 AFAP1L1Q8TED9 768 aa8.33□□□□□ -1.08
SYNE1-228ENST00000490135 CAMK4Q16566 473 aa8.32□□□□□ -1.08
SYNE1-228ENST00000490135 HDXQ7Z353 690 aa8.32□□□□□ -1.08
SYNE1-228ENST00000490135 CAPN7Q9Y6W3 813 aa8.32□□□□□ -1.08
SYNE1-228ENST00000490135 ARL1P40616 181 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-228ENST00000490135 FBXO18Q8NFZ0 1043 aa8.32□□□□□ -1.08
SYNE1-228ENST00000490135 PPP1R14CQ8TAE6 165 aa8.32□□□□□ -1.08
SYNE1-228ENST00000490135 TACO1Q9BSH4 297 aaKnown RBP8.32□□□□□ -1.08
SYNE1-228ENST00000490135 CTNNA3Q9UI47 895 aa8.32□□□□□ -1.08
SYNE1-228ENST00000490135 MINK1Q8N4C8 1332 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-228ENST00000490135 CA8P35219 290 aa8.32□□□□□ -1.08
SYNE1-228ENST00000490135 FKBP15Q5T1M5 1219 aa8.32□□□□□ -1.08
SYNE1-228ENST00000490135 UBAC1Q9BSL1 405 aa8.32□□□□□ -1.08
SYNE1-228ENST00000490135 MED4Q9NPJ6 270 aa8.32□□□□□ -1.08
SYNE1-228ENST00000490135 A0A087WUV0 522 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-228ENST00000490135 SLFN14P0C7P3 912 aa8.32□□□□□ -1.08
SYNE1-228ENST00000490135 ACTN2P35609 894 aa8.32□□□□□ -1.08
SYNE1-228ENST00000490135 WASF1Q92558 559 aa8.32□□□□□ -1.08
SYNE1-228ENST00000490135 BCAR3O75815 825 aa8.32□□□□□ -1.08
SYNE1-228ENST00000490135 GNAI3P08754 354 aa8.32□□□□□ -1.08
SYNE1-228ENST00000490135 SCP2P22307 547 aa8.32□□□□□ -1.08
SYNE1-228ENST00000490135 CYP2C19P33261 490 aa8.32□□□□□ -1.08
SYNE1-228ENST00000490135 MMP14P50281 582 aa8.32□□□□□ -1.08
SYNE1-228ENST00000490135 PDCD2Q16342 344 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-228ENST00000490135 SPECC1LQ69YQ0 1117 aa8.32□□□□□ -1.08
SYNE1-228ENST00000490135 ISM2Q6H9L7 571 aa8.32□□□□□ -1.08
SYNE1-228ENST00000490135 ARMC2Q8NEN0 867 aa8.32□□□□□ -1.08
SYNE1-228ENST00000490135 TRIM66O15016 1216 aa8.31□□□□□ -1.08
SYNE1-228ENST00000490135 SURF6O75683 361 aaKnown RBP8.31□□□□□ -1.08
SYNE1-228ENST00000490135 PRR29P0C7W0 189 aa8.31□□□□□ -1.08
SYNE1-228ENST00000490135 TTC16Q8NEE8 873 aa8.31□□□□□ -1.08
SYNE1-228ENST00000490135 NAP1L3Q99457 506 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-228ENST00000490135 ANAPC4Q9UJX5 808 aa8.31□□□□□ -1.08
SYNE1-228ENST00000490135 CEP131Q9UPN4 1083 aa8.31□□□□□ -1.08
SYNE1-228ENST00000490135 NDC80O14777 642 aa8.31□□□□□ -1.08
SYNE1-228ENST00000490135 GSDMDP57764 484 aa8.31□□□□□ -1.08
SYNE1-228ENST00000490135 TRIM4Q9C037 500 aa8.31□□□□□ -1.08
SYNE1-228ENST00000490135 CYP46A1Q9Y6A2 500 aa8.31□□□□□ -1.08
SYNE1-228ENST00000490135 SMARCA2P51531 1590 aa8.31□□□□□ -1.08
SYNE1-228ENST00000490135 NCBP1Q09161 790 aaKnown RBP8.31□□□□□ -1.08
SYNE1-228ENST00000490135 SEPT6Q14141 434 aa8.31□□□□□ -1.08
SYNE1-228ENST00000490135 CCDC92Q53HC0 331 aaPredicted RBP8.31□□□□□ -1.08
SYNE1-228ENST00000490135 B4GALNT4Q76KP1 1039 aa8.31□□□□□ -1.08
SYNE1-228ENST00000490135 CACNA2D4Q7Z3S7 1137 aa8.31□□□□□ -1.08
SYNE1-228ENST00000490135 ATP2C2O75185 946 aa8.31□□□□□ -1.08
SYNE1-228ENST00000490135 ACRBPQ8NEB7 543 aa8.31□□□□□ -1.08
SYNE1-228ENST00000490135 GOLGA1Q92805 767 aa8.31□□□□□ -1.08
SYNE1-228ENST00000490135 EIF3CLB5ME19 914 aaKnown RBP8.3□□□□□ -1.08
SYNE1-228ENST00000490135 NOL3O60936 208 aaKnown RBP8.3□□□□□ -1.08
SYNE1-228ENST00000490135 CEP128Q6ZU80 1094 aa8.3□□□□□ -1.08
SYNE1-228ENST00000490135 EIF3CQ99613 913 aaKnown RBP8.3□□□□□ -1.08
SYNE1-228ENST00000490135 SKILP12757 684 aa8.3□□□□□ -1.08
SYNE1-228ENST00000490135 SFPQP23246 707 aaKnown RBP eCLIP8.3□□□□□ -1.08
SYNE1-228ENST00000490135 NEK4P51957 841 aa8.3□□□□□ -1.08
SYNE1-228ENST00000490135 STK3Q13188 491 aa8.3□□□□□ -1.08
SYNE1-228ENST00000490135 CCDC30Q5VVM6 783 aa8.3□□□□□ -1.08
SYNE1-228ENST00000490135 WHAMMQ8TF30 809 aa8.3□□□□□ -1.08
SYNE1-228ENST00000490135 SEC63Q9UGP8 760 aaKnown RBP8.3□□□□□ -1.08
SYNE1-228ENST00000490135 IKBKGQ9Y6K9 419 aa8.3□□□□□ -1.08
SYNE1-228ENST00000490135 FMN1Q68DA7 1419 aa8.3□□□□□ -1.08
SYNE1-228ENST00000490135 TPD52L2O43399 206 aaKnown RBP8.3□□□□□ -1.08
SYNE1-228ENST00000490135 HMGB2P26583 209 aaKnown RBP8.3□□□□□ -1.08
SYNE1-228ENST00000490135 FBF1Q8TES7 1133 aa8.3□□□□□ -1.08
SYNE1-228ENST00000490135 MPHOSPH8Q99549 860 aa8.3□□□□□ -1.08
SYNE1-228ENST00000490135 UPF3BQ9BZI7 483 aaKnown RBP8.3□□□□□ -1.08
SYNE1-228ENST00000490135 ETAA1Q9NY74 926 aa8.3□□□□□ -1.08
SYNE1-228ENST00000490135 TUBB4AP04350 444 aa8.3□□□□□ -1.08
SYNE1-228ENST00000490135 KRT85P78386 507 aa8.3□□□□□ -1.08
SYNE1-228ENST00000490135 TTLL12Q14166 644 aaPredicted RBP8.3□□□□□ -1.08
SYNE1-228ENST00000490135 SPECC1Q5M775 1068 aa8.3□□□□□ -1.08
SYNE1-228ENST00000490135 TTC19Q6DKK2 380 aaPredicted RBP8.3□□□□□ -1.08
SYNE1-228ENST00000490135 APBB1IPQ7Z5R6 666 aaPredicted RBP8.3□□□□□ -1.08
SYNE1-228ENST00000490135 SRLQ86TD4 932 aa8.3□□□□□ -1.08
SYNE1-228ENST00000490135 ZNF710Q8N1W2 664 aa8.3□□□□□ -1.08
SYNE1-228ENST00000490135 UBA5Q9GZZ9 404 aa8.3□□□□□ -1.08
SYNE1-228ENST00000490135 EHMT1Q9H9B1 1298 aa8.3□□□□□ -1.08
SYNE1-228ENST00000490135 CHCHD3Q9NX63 227 aaKnown RBP8.3□□□□□ -1.08
SYNE1-228ENST00000490135 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.3□□□□□ -1.08
SYNE1-228ENST00000490135 RAD50Q92878 1312 aa8.3□□□□□ -1.08
SYNE1-228ENST00000490135 ERICH3Q5RHP9 1530 aa8.3□□□□□ -1.08
SYNE1-228ENST00000490135 PHACTR2O75167 634 aa8.3□□□□□ -1.08
SYNE1-228ENST00000490135 IGHDP01880 384 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms