RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 XAGE3Q8WTP9 111 aa13.97□□□□□ -0.17
VPS13D-210ENST00000489961 MAP3K15Q6ZN16 1313 aa13.96□□□□□ -0.17
VPS13D-210ENST00000489961 ERVV-1B6SEH8 477 aa13.96□□□□□ -0.17
VPS13D-210ENST00000489961 TCERG1O14776 1098 aaKnown RBP13.96□□□□□ -0.17
VPS13D-210ENST00000489961 PTGER2P43116 358 aa13.96□□□□□ -0.17
VPS13D-210ENST00000489961 FKBP8Q14318 412 aa13.96□□□□□ -0.17
VPS13D-210ENST00000489961 CLEC4GQ6UXB4 293 aa13.96□□□□□ -0.17
VPS13D-210ENST00000489961 TTLL7Q6ZT98 887 aa13.96□□□□□ -0.17
VPS13D-210ENST00000489961 SGIP1Q9BQI5 828 aa13.96□□□□□ -0.17
VPS13D-210ENST00000489961 PPP1R1BQ9UD71 204 aaPredicted RBP13.96□□□□□ -0.17
VPS13D-210ENST00000489961 NUP98P52948 1817 aa13.95□□□□□ -0.18
VPS13D-210ENST00000489961 SLC4A2P04920 1241 aa13.95□□□□□ -0.18
VPS13D-210ENST00000489961 MMP10P09238 476 aa13.95□□□□□ -0.18
VPS13D-210ENST00000489961 CT47B1P0C2W7 299 aaPredicted RBP13.95□□□□□ -0.18
VPS13D-210ENST00000489961 ZNF428Q96B54 188 aa13.95□□□□□ -0.18
VPS13D-210ENST00000489961 ZBTB3Q9H5J0 574 aa13.95□□□□□ -0.18
VPS13D-210ENST00000489961 BCL2L12Q9HB09 334 aa13.95□□□□□ -0.18
VPS13D-210ENST00000489961 PARP3Q9Y6F1 533 aa13.94□□□□□ -0.18
VPS13D-210ENST00000489961 DDX58O95786 925 aaKnown RBP13.93□□□□□ -0.18
VPS13D-210ENST00000489961 TM4SF1P30408 202 aa13.93□□□□□ -0.18
VPS13D-210ENST00000489961 NFIXQ14938 502 aa13.93□□□□□ -0.18
VPS13D-210ENST00000489961 TBC1D9BQ66K14 1250 aa13.93□□□□□ -0.18
VPS13D-210ENST00000489961 GIGYF2Q6Y7W6 1299 aaKnown RBP13.93□□□□□ -0.18
VPS13D-210ENST00000489961 BICDL1Q6ZP65 573 aa13.93□□□□□ -0.18
VPS13D-210ENST00000489961 ANKRD13DQ6ZTN6 518 aa13.93□□□□□ -0.18
VPS13D-210ENST00000489961 PLBD2Q8NHP8 589 aa13.93□□□□□ -0.18
VPS13D-210ENST00000489961 YTHDC1Q96MU7 727 aaKnown RBP13.93□□□□□ -0.18
VPS13D-210ENST00000489961 SETDB2Q96T68 719 aa13.93□□□□□ -0.18
VPS13D-210ENST00000489961 PHAXQ9H814 394 aaKnown RBP13.93□□□□□ -0.18
VPS13D-210ENST00000489961 ANKRD36CQ5JPF3 1778 aa13.92□□□□□ -0.18
VPS13D-210ENST00000489961 ARFGEF2Q9Y6D5 1785 aa13.92□□□□□ -0.18
VPS13D-210ENST00000489961 HLFQ16534 295 aa13.92□□□□□ -0.18
VPS13D-210ENST00000489961 HSP90AB3PQ58FF7 597 aa13.92□□□□□ -0.18
VPS13D-210ENST00000489961 RIC3Q7Z5B4 369 aa13.92□□□□□ -0.18
VPS13D-210ENST00000489961 NIP7Q9Y221 180 aaKnown RBP eCLIP13.92□□□□□ -0.18
VPS13D-210ENST00000489961 CARMIL3Q8ND23 1372 aa13.92□□□□□ -0.18
VPS13D-210ENST00000489961 ATP10DQ9P241 1426 aa13.91□□□□□ -0.18
VPS13D-210ENST00000489961 POLRMTO00411 1230 aaKnown RBP13.91□□□□□ -0.18
VPS13D-210ENST00000489961 DDR1Q08345 913 aa13.91□□□□□ -0.18
VPS13D-210ENST00000489961 ALDH1L2Q3SY69 923 aa13.91□□□□□ -0.18
VPS13D-210ENST00000489961 AFDNP55196 1824 aaKnown RBP13.9□□□□□ -0.18
VPS13D-210ENST00000489961 SERPINB2P05120 415 aa13.9□□□□□ -0.18
VPS13D-210ENST00000489961 FLIIQ13045 1269 aa13.9□□□□□ -0.18
VPS13D-210ENST00000489961 G2E3Q7L622 706 aa13.9□□□□□ -0.18
VPS13D-210ENST00000489961 NRXN2Q9P2S2 1712 aa13.9□□□□□ -0.18
VPS13D-210ENST00000489961 NPHP1O15259 732 aa13.89□□□□□ -0.19
VPS13D-210ENST00000489961 GPTP24298 496 aa13.89□□□□□ -0.19
VPS13D-210ENST00000489961 FKBP5Q13451 457 aaPredicted RBP13.89□□□□□ -0.19
VPS13D-210ENST00000489961 TCIRG1Q13488 830 aa13.89□□□□□ -0.19
VPS13D-210ENST00000489961 KSR2Q6VAB6 950 aa13.89□□□□□ -0.19
VPS13D-210ENST00000489961 KLHL34Q8N239 644 aa13.89□□□□□ -0.19
VPS13D-210ENST00000489961 SSH1Q8WYL5 1049 aa13.89□□□□□ -0.19
VPS13D-210ENST00000489961 SMC4Q9NTJ3 1288 aa13.89□□□□□ -0.19
VPS13D-210ENST00000489961 PI4KAP2A4QPH2 592 aa13.88□□□□□ -0.19
VPS13D-210ENST00000489961 PARP10Q53GL7 1025 aa13.88□□□□□ -0.19
VPS13D-210ENST00000489961 ZNF34Q8IZ26 560 aa13.88□□□□□ -0.19
VPS13D-210ENST00000489961 MRPL50Q8N5N7 158 aaKnown RBP13.88□□□□□ -0.19
VPS13D-210ENST00000489961 PI4KAP1Q8N8J0 262 aa13.88□□□□□ -0.19
VPS13D-210ENST00000489961 TPTE2Q6XPS3 522 aa13.87□□□□□ -0.19
VPS13D-210ENST00000489961 PPP1R42Q7Z4L9 355 aa13.87□□□□□ -0.19
VPS13D-210ENST00000489961 NBPF5PQ86XG9 351 aaPredicted RBP13.87□□□□□ -0.19
VPS13D-210ENST00000489961 CNBD1Q8NA66 436 aa13.87□□□□□ -0.19
VPS13D-210ENST00000489961 BCL2L13Q9BXK5 485 aa13.87□□□□□ -0.19
VPS13D-210ENST00000489961 FHDC1Q9C0D6 1143 aaPredicted RBP13.87□□□□□ -0.19
VPS13D-210ENST00000489961 NYXQ9GZU5 481 aa13.87□□□□□ -0.19
VPS13D-210ENST00000489961 MAP3K2Q9Y2U5 619 aa13.87□□□□□ -0.19
VPS13D-210ENST00000489961 CD2APQ9Y5K6 639 aa13.87□□□□□ -0.19
VPS13D-210ENST00000489961 KIF13BQ9NQT8 1826 aa13.87□□□□□ -0.19
VPS13D-210ENST00000489961 ADCY9O60503 1353 aa13.86□□□□□ -0.19
VPS13D-210ENST00000489961 FAM177BA6PVY3 158 aa13.86□□□□□ -0.19
VPS13D-210ENST00000489961 GTF2E1P29083 439 aaPredicted RBP13.86□□□□□ -0.19
VPS13D-210ENST00000489961 RARSP54136 660 aaKnown RBP13.86□□□□□ -0.19
VPS13D-210ENST00000489961 ST5P78524 1137 aa13.86□□□□□ -0.19
VPS13D-210ENST00000489961 NEXNQ0ZGT2 675 aa13.86□□□□□ -0.19
VPS13D-210ENST00000489961 MYD88Q99836 296 aa13.86□□□□□ -0.19
VPS13D-210ENST00000489961 METTL22Q9BUU2 404 aaPredicted RBP13.86□□□□□ -0.19
VPS13D-210ENST00000489961 C10orf71Q711Q0 1435 aa13.86□□□□□ -0.19
VPS13D-210ENST00000489961 PTPRCP08575 1304 aa13.86□□□□□ -0.19
VPS13D-210ENST00000489961 UBN2Q6ZU65 1347 aa13.86□□□□□ -0.19
VPS13D-210ENST00000489961 IBTKQ9P2D0 1353 aaPredicted RBP13.85□□□□□ -0.19
VPS13D-210ENST00000489961 PRR5LQ6MZQ0 368 aa13.85□□□□□ -0.19
VPS13D-210ENST00000489961 DNAAF4Q8WXU2 420 aa13.85□□□□□ -0.19
VPS13D-210ENST00000489961 ISCA1Q9BUE6 129 aa13.85□□□□□ -0.19
VPS13D-210ENST00000489961 ATP5J2-PTCD1G3V325 749 aa13.84□□□□□ -0.19
VPS13D-210ENST00000489961 BRPF1P55201 1214 aaPredicted RBP13.84□□□□□ -0.19
VPS13D-210ENST00000489961 TRIM28Q13263 835 aaKnown RBP13.84□□□□□ -0.19
VPS13D-210ENST00000489961 SUSD4Q5VX71 490 aa13.84□□□□□ -0.19
VPS13D-210ENST00000489961 NLRP10Q86W26 655 aa13.84□□□□□ -0.19
VPS13D-210ENST00000489961 SYT17Q9BSW7 474 aa13.84□□□□□ -0.19
VPS13D-210ENST00000489961 UTP14AQ9BVJ6 771 aaKnown RBP13.84□□□□□ -0.19
VPS13D-210ENST00000489961 RNF123Q5XPI4 1314 aa13.84□□□□□ -0.19
VPS13D-210ENST00000489961 KIF16BQ96L93 1317 aa13.84□□□□□ -0.19
VPS13D-210ENST00000489961 CCDC191Q8NCU4 936 aa13.83□□□□□ -0.2
VPS13D-210ENST00000489961 ANKRD31Q8N7Z5 1873 aa13.82□□□□□ -0.2
VPS13D-210ENST00000489961 F6X3S4 739 aa13.82□□□□□ -0.2
VPS13D-210ENST00000489961 NTSR2O95665 410 aa13.82□□□□□ -0.2
VPS13D-210ENST00000489961 PDE6BP35913 854 aa13.82□□□□□ -0.2
VPS13D-210ENST00000489961 TGFB2P61812 414 aa13.82□□□□□ -0.2
VPS13D-210ENST00000489961 BRIP1Q9BX63 1249 aa13.82□□□□□ -0.2
VPS13D-210ENST00000489961 CWC25Q9NXE8 425 aaPredicted RBP13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms