RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 DBF4Q9UBU7 674 aaPredicted RBP22.46■■□□□ 1.19
MDC1-206ENST00000489540 LAMB4A4D0S4 1761 aa22.46■■□□□ 1.19
MDC1-206ENST00000489540 A0A0G2JLW4 131 aa22.45■■□□□ 1.18
MDC1-206ENST00000489540 ELL2O00472 640 aaPredicted RBP22.45■■□□□ 1.18
MDC1-206ENST00000489540 PROSER3Q2NL68 480 aa22.45■■□□□ 1.18
MDC1-206ENST00000489540 C8orf58Q8NAV2 365 aa22.45■■□□□ 1.18
MDC1-206ENST00000489540 GRIN3BO60391 1043 aa22.44■■□□□ 1.18
MDC1-206ENST00000489540 TSR2Q969E8 191 aaKnown RBP22.44■■□□□ 1.18
MDC1-206ENST00000489540 CHPF2Q9P2E5 772 aa22.44■■□□□ 1.18
MDC1-206ENST00000489540 NIP7Q9Y221 180 aaKnown RBP eCLIP22.44■■□□□ 1.18
MDC1-206ENST00000489540 ANXA1P04083 346 aa22.43■■□□□ 1.18
MDC1-206ENST00000489540 DPEP1P16444 411 aa22.43■■□□□ 1.18
MDC1-206ENST00000489540 COPS6Q7L5N1 327 aa22.43■■□□□ 1.18
MDC1-206ENST00000489540 MIER1Q8N108 512 aa22.42■■□□□ 1.18
MDC1-206ENST00000489540 ZBTB3Q9H5J0 574 aa22.42■■□□□ 1.18
MDC1-206ENST00000489540 HYPKQ9NX55 129 aa22.42■■□□□ 1.18
MDC1-206ENST00000489540 NPHP1O15259 732 aa22.41■■□□□ 1.18
MDC1-206ENST00000489540 YBX3P16989 372 aaKnown RBP eCLIP22.41■■□□□ 1.186e-7■■□□□ 12.1
MDC1-206ENST00000489540 AIMP1Q12904 312 aaKnown RBP22.41■■□□□ 1.18
MDC1-206ENST00000489540 PRR5LQ6MZQ0 368 aa22.41■■□□□ 1.18
MDC1-206ENST00000489540 TPTE2Q6XPS3 522 aa22.41■■□□□ 1.18
MDC1-206ENST00000489540 GIGYF2Q6Y7W6 1299 aaKnown RBP22.41■■□□□ 1.18
MDC1-206ENST00000489540 NBPF5PQ86XG9 351 aaPredicted RBP22.41■■□□□ 1.18
MDC1-206ENST00000489540 CNBD1Q8NA66 436 aa22.41■■□□□ 1.18
MDC1-206ENST00000489540 XAGE3Q8WTP9 111 aa22.41■■□□□ 1.18
MDC1-206ENST00000489540 PXDNLA1KZ92 1463 aa22.41■■□□□ 1.18
MDC1-206ENST00000489540 CCDC30Q5VVM6 783 aa22.4■■□□□ 1.18
MDC1-206ENST00000489540 BRIP1Q9BX63 1249 aa22.4■■□□□ 1.18
MDC1-206ENST00000489540 SCN7AQ01118 1682 aa22.4■■□□□ 1.18
MDC1-206ENST00000489540 KCNA3P22001 575 aa22.4■■□□□ 1.18
MDC1-206ENST00000489540 ST5P78524 1137 aa22.4■■□□□ 1.18
MDC1-206ENST00000489540 GOLGA2Q08379 1002 aa22.4■■□□□ 1.18
MDC1-206ENST00000489540 TSPYL6Q8N831 410 aa22.4■■□□□ 1.18
MDC1-206ENST00000489540 MYH16Q9H6N6 1097 aa22.4■■□□□ 1.18
MDC1-206ENST00000489540 PIM2Q9P1W9 311 aa22.4■■□□□ 1.18
MDC1-206ENST00000489540 PDZRN3Q9UPQ7 1066 aa22.4■■□□□ 1.18
MDC1-206ENST00000489540 PDE6BP35913 854 aa22.39■■□□□ 1.17
MDC1-206ENST00000489540 TWISTNBQ3B726 338 aaPredicted RBP22.38■■□□□ 1.17
MDC1-206ENST00000489540 FANCIQ9NVI1 1328 aa22.38■■□□□ 1.17
MDC1-206ENST00000489540 H0YIN7 160 aa22.37■■□□□ 1.17
MDC1-206ENST00000489540 CHRNA5P30532 468 aa22.37■■□□□ 1.17
MDC1-206ENST00000489540 HSP90AB3PQ58FF7 597 aa22.37■■□□□ 1.17
MDC1-206ENST00000489540 ZNF34Q8IZ26 560 aa22.37■■□□□ 1.17
MDC1-206ENST00000489540 NYXQ9GZU5 481 aa22.37■■□□□ 1.17
MDC1-206ENST00000489540 WWC3Q9ULE0 1092 aa22.37■■□□□ 1.17
MDC1-206ENST00000489540 ZNF521Q96K83 1311 aa22.37■■□□□ 1.17
MDC1-206ENST00000489540 ATP10DQ9P241 1426 aa22.37■■□□□ 1.17
MDC1-206ENST00000489540 GTF2E1P29083 439 aaPredicted RBP22.36■■□□□ 1.17
MDC1-206ENST00000489540 ANKRD13DQ6ZTN6 518 aa22.36■■□□□ 1.17
MDC1-206ENST00000489540 C2CD5Q86YS7 1000 aa22.36■■□□□ 1.17
MDC1-206ENST00000489540 PLBD2Q8NHP8 589 aa22.36■■□□□ 1.17
MDC1-206ENST00000489540 KIF13BQ9NQT8 1826 aa22.36■■□□□ 1.17
MDC1-206ENST00000489540 BCS1LQ9Y276 419 aa22.36■■□□□ 1.17
MDC1-206ENST00000489540 GPTP24298 496 aa22.35■■□□□ 1.17
MDC1-206ENST00000489540 PARP10Q53GL7 1025 aa22.35■■□□□ 1.17
MDC1-206ENST00000489540 DALRD3Q5D0E6 543 aaKnown RBP22.35■■□□□ 1.17
MDC1-206ENST00000489540 CCDC24Q8N4L8 307 aa22.35■■□□□ 1.17
MDC1-206ENST00000489540 SPINK5Q9NQ38 1064 aaPredicted RBP22.35■■□□□ 1.17
MDC1-206ENST00000489540 BCORQ6W2J9 1755 aa22.35■■□□□ 1.17
MDC1-206ENST00000489540 FAM177BA6PVY3 158 aa22.34■■□□□ 1.17
MDC1-206ENST00000489540 NRXN2Q9P2S2 1712 aa22.34■■□□□ 1.17
MDC1-206ENST00000489540 TCIRG1Q13488 830 aa22.33■■□□□ 1.17
MDC1-206ENST00000489540 PPP1R42Q7Z4L9 355 aa22.33■■□□□ 1.17
MDC1-206ENST00000489540 STK31Q9BXU1 1019 aa22.33■■□□□ 1.17
MDC1-206ENST00000489540 EXOSC9Q06265 439 aaKnown RBP22.32■■□□□ 1.16
MDC1-206ENST00000489540 SUSD4Q5VX71 490 aa22.32■■□□□ 1.16
MDC1-206ENST00000489540 UBN2Q6ZU65 1347 aa22.32■■□□□ 1.16
MDC1-206ENST00000489540 VAMP4O75379 141 aa22.31■■□□□ 1.16
MDC1-206ENST00000489540 YY1P25490 414 aa22.31■■□□□ 1.16
MDC1-206ENST00000489540 PHAXQ9H814 394 aaKnown RBP22.31■■□□□ 1.16
MDC1-206ENST00000489540 TTLL6Q8N841 843 aa22.31■■□□□ 1.16
MDC1-206ENST00000489540 IBTKQ9P2D0 1353 aaPredicted RBP22.3■■□□□ 1.16
MDC1-206ENST00000489540 KLRG2A4D1S0 409 aaPredicted RBP22.3■■□□□ 1.16
MDC1-206ENST00000489540 E9PSI1 815 aa22.3■■□□□ 1.16
MDC1-206ENST00000489540 DDX58O95786 925 aaKnown RBP22.3■■□□□ 1.16
MDC1-206ENST00000489540 RIC3Q7Z5B4 369 aa22.3■■□□□ 1.16
MDC1-206ENST00000489540 UTP14AQ9BVJ6 771 aaKnown RBP22.3■■□□□ 1.16
MDC1-206ENST00000489540 AFDNP55196 1824 aaKnown RBP22.29■■□□□ 1.16
MDC1-206ENST00000489540 ZNF622Q969S3 477 aaKnown RBP eCLIP22.29■■□□□ 1.164e-12■□□□□ 11.3
MDC1-206ENST00000489540 SLC4A2P04920 1241 aa22.28■■□□□ 1.16
MDC1-206ENST00000489540 SRGNP10124 158 aa22.28■■□□□ 1.16
MDC1-206ENST00000489540 STYK1Q6J9G0 422 aa22.28■■□□□ 1.16
MDC1-206ENST00000489540 NLRP10Q86W26 655 aa22.28■■□□□ 1.16
MDC1-206ENST00000489540 NUTM1Q86Y26 1132 aa22.28■■□□□ 1.16
MDC1-206ENST00000489540 MASTLQ96GX5 879 aa22.28■■□□□ 1.16
MDC1-206ENST00000489540 NTSR2O95665 410 aa22.27■■□□□ 1.16
MDC1-206ENST00000489540 ERFEQ4G0M1 354 aa22.27■■□□□ 1.16
MDC1-206ENST00000489540 CNKSR1Q969H4 720 aa22.27■■□□□ 1.16
MDC1-206ENST00000489540 KIAA1551Q9HCM1 1747 aa22.27■■□□□ 1.16
MDC1-206ENST00000489540 RNF123Q5XPI4 1314 aa22.26■■□□□ 1.15
MDC1-206ENST00000489540 TCERG1O14776 1098 aaKnown RBP22.26■■□□□ 1.15
MDC1-206ENST00000489540 TRIM28Q13263 835 aaKnown RBP22.26■■□□□ 1.15
MDC1-206ENST00000489540 ARHGAP27Q6ZUM4 889 aa22.26■■□□□ 1.15
MDC1-206ENST00000489540 N4BP2Q86UW6 1770 aaPredicted RBP22.26■■□□□ 1.15
MDC1-206ENST00000489540 NPR1P16066 1061 aa22.25■■□□□ 1.15
MDC1-206ENST00000489540 SLFN5Q08AF3 891 aa22.25■■□□□ 1.15
MDC1-206ENST00000489540 ISCA1Q9BUE6 129 aa22.25■■□□□ 1.15
MDC1-206ENST00000489540 SLC10A5Q5PT55 438 aa22.24■■□□□ 1.15
MDC1-206ENST00000489540 TRMT112Q9UI30 125 aaKnown RBP22.24■■□□□ 1.15
MDC1-206ENST00000489540 UTRNP46939 3433 aa22.24■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms